NO03G05200.1, NO03G05200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05200.1
Unique NameNO03G05200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1029
Alignment locationchr3:1485775..1486803 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1485775..1486803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05200.1 vs.
Match: XP_005854402.1 (ubiquitin carboxyl-terminal hydrolase 7, partial [Nannochloropsis gaditana CCMP526]; EKU21958.1 ubiquitin carboxyl-terminal hydrolase 7, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 85.1 bits (209), Expect = 4.600e-13
Identity = 60/157 (38.22%), Postives = 79/157 (50.32%), Query Frame = 0 
Query:   57 EGGTGSSLPLHPSSSASTRR------------YLYELKGVVAHVGTSDSGHYYSFIKEEDEDAGEDGGEGGRWFEYNDQVVSPFDPSLIPKECFGGTEPPPPLLSVVHATGGRGGALPGREGGRVRNNNAYLLFYQHKLVDVPHQQPEQHPPLHKLQ 202
            +GGTG +   +   SA  R             YLY L GVV H+GT++SGHYYS+I+E        GGE   WFE+ND VV+ F+P+ +  ECFGG E           TGG GG   GR   R R  NA+LL Y     D+  +   ++   H+ Q
Sbjct:  578 KGGTGIAAAGNAEDSAELRERTQSAAGHPPEYYLYRLAGVVIHMGTANSGHYYSYIRER-------GGERSGWFEFNDTVVTDFNPADLEVECFGGQE-------TRGGTGG-GGYHGGRNWARERIRNAFLLVYDR--CDIRPEDDARNTVAHRPQ 717
The following BLAST results are available for this feature:
BLAST of NO03G05200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854402.14.600e-1338.22ubiquitin carboxyl-terminal hydrolase 7, partial [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05200NO03G05200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05200.1NO03G05200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05200.1.cds1NO03G05200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05200.1 ID=NO03G05200.1|Name=NO03G05200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp
ATGAGGGTAGGGGGGGAGGAAGGGGGGGAGGGAGGGGAGGAGGGAAGAAA
GGCACCGATGCTGGGGGCATTGGGGTCGTCGTTTTTCTCTTCATCGAGGG
GCCTGCTGCTGGCGTCCTCCCTCTCGTCCTCCTCTGGTTTGTTCTCTTCG
ATGGGAGGGGAAGGAGGGGAGGGGGGAACAGGGAGCTCGCTTCCCCTCCA
TCCATCGTCCTCGGCCTCGACCCGGAGGTATCTTTACGAGTTGAAGGGGG
TGGTGGCCCATGTGGGCACAAGCGACAGTGGACATTATTACTCCTTCATC
AAGGAGGAGGATGAGGACGCGGGGGAGGACGGGGGGGAAGGAGGGCGGTG
GTTTGAGTATAATGACCAGGTGGTGTCGCCCTTTGATCCGTCTCTGATTC
CAAAAGAGTGTTTTGGGGGGACAGAGCCTCCTCCTCCTTTGCTATCCGTA
GTGCACGCAACGGGAGGGAGGGGGGGGGCTTTGCCAGGAAGAGAGGGCGG
GAGGGTGAGGAATAATAATGCCTACTTGTTGTTCTATCAGCATAAATTGG
TGGATGTGCCGCATCAGCAGCCGGAGCAGCACCCGCCGCTTCACAAGCTC
CAGCACCAGCACCAAAACCAGCACCGGCAGCAAAAGCAGTCATCACGGAA
GAGAGAGATGACGGAGATGGGAATGGAGGGGGAAGAGGAGGAGGAAGGGG
GGGAGGGAGAGGGGGAGCAGACACCCCTACCTTCCCCTGTGACAGCGAGC
AAACAAGAGCAGCGAGAGCGAGGCGTGCTCTGGGGAATGAGGAAAGAGAG
TGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGGGG
AGAAGGAAGGGGTGTTGTCCGCGTTGGTGCTGGCGAGGCGGCGAAGGGAG
AGACTGGCGTCTGAGAGGGCGAATAGCTTTGGCACGTATTTGGAAGCATA
TGACAGTAGCAGCAAAGTCAAGGGCCACAGTGCTGGAAGAGAAGGACGAG
GGGGGGGAGGGGAGGAGGACGAGGAATAG
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protein sequence of NO03G05200.1

>NO03G05200.1-protein ID=NO03G05200.1-protein|Name=NO03G05200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MRVGGEEGGEGGEEGRKAPMLGALGSSFFSSSRGLLLASSLSSSSGLFSS
MGGEGGEGGTGSSLPLHPSSSASTRRYLYELKGVVAHVGTSDSGHYYSFI
KEEDEDAGEDGGEGGRWFEYNDQVVSPFDPSLIPKECFGGTEPPPPLLSV
VHATGGRGGALPGREGGRVRNNNAYLLFYQHKLVDVPHQQPEQHPPLHKL
QHQHQNQHRQQKQSSRKREMTEMGMEGEEEEEGGEGEGEQTPLPSPVTAS
KQEQRERGVLWGMRKESEEEEEEEEEEEEEDEGEKEGVLSALVLARRRRE
RLASERANSFGTYLEAYDSSSKVKGHSAGREGRGGGGEEDEE*
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mRNA from alignment at chr3:1485775..1486803+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05200.1 ID=NO03G05200.1|Name=NO03G05200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp|location=Sequence derived from alignment at chr3:1485775..1486803+ (Nannochloropsis oceanica)
ATGAGGGTAGGGGGGGAGGAAGGGGGGGAGGGAGGGGAGGAGGGAAGAAA
GGCACCGATGCTGGGGGCATTGGGGTCGTCGTTTTTCTCTTCATCGAGGG
GCCTGCTGCTGGCGTCCTCCCTCTCGTCCTCCTCTGGTTTGTTCTCTTCG
ATGGGAGGGGAAGGAGGGGAGGGGGGAACAGGGAGCTCGCTTCCCCTCCA
TCCATCGTCCTCGGCCTCGACCCGGAGGTATCTTTACGAGTTGAAGGGGG
TGGTGGCCCATGTGGGCACAAGCGACAGTGGACATTATTACTCCTTCATC
AAGGAGGAGGATGAGGACGCGGGGGAGGACGGGGGGGAAGGAGGGCGGTG
GTTTGAGTATAATGACCAGGTGGTGTCGCCCTTTGATCCGTCTCTGATTC
CAAAAGAGTGTTTTGGGGGGACAGAGCCTCCTCCTCCTTTGCTATCCGTA
GTGCACGCAACGGGAGGGAGGGGGGGGGCTTTGCCAGGAAGAGAGGGCGG
GAGGGTGAGGAATAATAATGCCTACTTGTTGTTCTATCAGCATAAATTGG
TGGATGTGCCGCATCAGCAGCCGGAGCAGCACCCGCCGCTTCACAAGCTC
CAGCACCAGCACCAAAACCAGCACCGGCAGCAAAAGCAGTCATCACGGAA
GAGAGAGATGACGGAGATGGGAATGGAGGGGGAAGAGGAGGAGGAAGGGG
GGGAGGGAGAGGGGGAGCAGACACCCCTACCTTCCCCTGTGACAGCGAGC
AAACAAGAGCAGCGAGAGCGAGGCGTGCTCTGGGGAATGAGGAAAGAGAG
TGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGGGG
AGAAGGAAGGGGTGTTGTCCGCGTTGGTGCTGGCGAGGCGGCGAAGGGAG
AGACTGGCGTCTGAGAGGGCGAATAGCTTTGGCACGTATTTGGAAGCATA
TGACAGTAGCAGCAAAGTCAAGGGCCACAGTGCTGGAAGAGAAGGACGAG
GGGGGGGAGGGGAGGAGGACGAGGAATAG
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Coding sequence (CDS) from alignment at chr3:1485775..1486803+

>NO03G05200.1 ID=NO03G05200.1|Name=NO03G05200.1|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at chr3:1485775..1486803+ (Nannochloropsis oceanica)
ATGAGGGTAGGGGGGGAGGAAGGGGGGGAGGGAGGGGAGGAGGGAAGAAA
GGCACCGATGCTGGGGGCATTGGGGTCGTCGTTTTTCTCTTCATCGAGGG
GCCTGCTGCTGGCGTCCTCCCTCTCGTCCTCCTCTGGTTTGTTCTCTTCG
ATGGGAGGGGAAGGAGGGGAGGGGGGAACAGGGAGCTCGCTTCCCCTCCA
TCCATCGTCCTCGGCCTCGACCCGGAGGTATCTTTACGAGTTGAAGGGGG
TGGTGGCCCATGTGGGCACAAGCGACAGTGGACATTATTACTCCTTCATC
AAGGAGGAGGATGAGGACGCGGGGGAGGACGGGGGGGAAGGAGGGCGGTG
GTTTGAGTATAATGACCAGGTGGTGTCGCCCTTTGATCCGTCTCTGATTC
CAAAAGAGTGTTTTGGGGGGACAGAGCCTCCTCCTCCTTTGCTATCCGTA
GTGCACGCAACGGGAGGGAGGGGGGGGGCTTTGCCAGGAAGAGAGGGCGG
GAGGGTGAGGAATAATAATGCCTACTTGTTGTTCTATCAGCATAAATTGG
TGGATGTGCCGCATCAGCAGCCGGAGCAGCACCCGCCGCTTCACAAGCTC
CAGCACCAGCACCAAAACCAGCACCGGCAGCAAAAGCAGTCATCACGGAA
GAGAGAGATGACGGAGATGGGAATGGAGGGGGAAGAGGAGGAGGAAGGGG
GGGAGGGAGAGGGGGAGCAGACACCCCTACCTTCCCCTGTGACAGCGAGC
AAACAAGAGCAGCGAGAGCGAGGCGTGCTCTGGGGAATGAGGAAAGAGAG
TGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGGGG
AGAAGGAAGGGGTGTTGTCCGCGTTGGTGCTGGCGAGGCGGCGAAGGGAG
AGACTGGCGTCTGAGAGGGCGAATAGCTTTGGCACGTATTTGGAAGCATA
TGACAGTAGCAGCAAAGTCAAGGGCCACAGTGCTGGAAGAGAAGGACGAG
GGGGGGGAGGGGAGGAGGACGAGGAATAG
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Synonyms
Publications