NO03G04610, NO03G04610 (gene) Nannochloropsis oceanica

Overview
NameNO03G04610
Unique NameNO03G04610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length681
Alignment locationchr3:1324981..1325661 -

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Properties
Property NameValue
DescriptionDynein light chain roadblock-type 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1324981..1325661 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004942Dynein_light-rel
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003774motor activity
Homology
[Close]
BLAST of NO03G04610 vs. NCBI_GenBank
Match: XP_009034990.1 (hypothetical protein AURANDRAFT_22926 [Aureococcus anophagefferens] >EGB10166.1 hypothetical protein AURANDRAFT_22926 [Aureococcus anophagefferens])

HSP 1 Score: 123.2 bits (308), Expect = 4.500e-25
Identity = 57/100 (57.00%), Postives = 80/100 (80.00%), Query Frame = 0 
Query:    1 MSQVEETIERIKIKQGIEGYVITNKKGQVLRRFHTMSEERADAMAATVRQLALKAQNVARDLDPSNEFQYLRIKTKKHEVIAAIDNEFLVTVLQRWTPSS 101
            MS+VEET+ER+KI+ G+EGYVI +K+GQVLRR  +M++ +A+  A  + QL+ KA+ V RDL+P NE +YLR++ K+HEV+ A D EFLV V+QRWTP+S
Sbjct:    1 MSEVEETLERVKIQAGVEGYVICSKQGQVLRRLPSMTQAQAEIYADFMSQLSRKARGVVRDLNPKNELRYLRLRAKRHEVLVAFDQEFLVIVIQRWTPAS 100
[Close]
BLAST of NO03G04610 vs. NCBI_GenBank
Match: XP_008869120.1 (hypothetical protein H310_06011 [Aphanomyces invadans] >ETW02515.1 hypothetical protein H310_06011 [Aphanomyces invadans])

HSP 1 Score: 109.4 bits (272), Expect = 6.700e-21
Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 0 
Query:    1 MSQVEETIERIKIKQGIEGYVITNKKGQVLRRFHTMSEERADAMAATVRQLALKAQNVARDLDPSNEFQYLRIKTKKHEVIAAIDNEFLVTVLQRWTPSSA 102
            MS+VEET+ERIK  +G+EGYVI +K G VLRR   M    A+  +  +++L  KA+ V RDL+P N+ QYLRI+ KK E++ A + EFLV V+Q+W+P+SA
Sbjct:    1 MSEVEETLERIKNHKGVEGYVIADKNGSVLRRHPHMDPANAERYSTYMKELTTKARGVVRDLNPKNDLQYLRIRLKKFEILVAHEREFLVIVIQKWSPASA 101
[Close]
BLAST of NO03G04610 vs. NCBI_GenBank
Match: XP_009826798.1 (hypothetical protein H257_04112 [Aphanomyces astaci] >ETV83368.1 hypothetical protein H257_04112 [Aphanomyces astaci])

HSP 1 Score: 107.8 bits (268), Expect = 2.000e-20
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 0 
Query:    1 MSQVEETIERIKIKQGIEGYVITNKKGQVLRRFHTMSEERADAMAATVRQLALKAQNVARDLDPSNEFQYLRIKTKKHEVIAAIDNEFLVTVLQRWTPSS 101
            MS+VEET+ERIK  +G+EGYVI +K G VLRR   M    A+  +  +++L  KA+ V RDL+P N+ QYLRI+ KK E++ A + EFLV V+Q+W+P+S
Sbjct:    1 MSEVEETLERIKNHKGVEGYVIADKNGSVLRRHPHMDPANAERYSTYMKELTTKARGVVRDLNPKNDLQYLRIRLKKFEILVAHEREFLVIVIQKWSPAS 100
[Close]
BLAST of NO03G04610 vs. NCBI_GenBank
Match: POM62086.1 (Dynein light chain 2B [Phytophthora palmivora var. palmivora])

HSP 1 Score: 107.1 bits (266), Expect = 3.300e-20
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 0 
Query:    1 MSQVEETIERIKIKQGIEGYVITNKKGQVLRRFHTMSEERADAMAATVRQLALKAQNVARDLDPSNEFQYLRIKTKKHEVIAAIDNEFLVTVLQRWTPSS 101
            MS+VEET+ERIK  +G+EGYVI ++ G VLRR   M    A+  A  +++L  KA+ V RDL+P N+ QY+RI+ KK E++ A + EFLV V+QRWTP++
Sbjct:    1 MSEVEETLERIKNHKGVEGYVIADRNGNVLRRHPQMQVAEAEKYALYMKELTTKARGVVRDLNPKNDLQYMRIRVKKLELLIAHEKEFLVVVIQRWTPTN 100
[Close]
BLAST of NO03G04610 vs. NCBI_GenBank
Match: XP_008912773.1 (hypothetical protein PPTG_16947 [Phytophthora parasitica INRA-310] >ETN01872.1 hypothetical protein PPTG_16947 [Phytophthora parasitica INRA-310])

HSP 1 Score: 106.7 bits (265), Expect = 4.400e-20
Identity = 50/101 (49.50%), Postives = 73/101 (72.28%), Query Frame = 0 
Query:    1 MSQVEETIERIKIKQGIEGYVITNKKGQVLRRFHTMSEERADAMAATVRQLALKAQNVARDLDPSNEFQYLRIKTKKHEVIAAIDNEFLVTVLQRWTPSSA 102
            MS+VEET+ERIK  +G+EGYVI ++ G VLRR   M    A+  A  +++L  KA+ V RDL+P N+ QY+RI+ KK E++ A + +FLV V+QRWTP+++
Sbjct:    1 MSEVEETLERIKNHKGVEGYVIADRNGNVLRRHPQMQVSEAEKYALYMKELTTKARGVVRDLNPKNDLQYMRIRVKKLELLIAHEKDFLVVVIQRWTPTNS 101
[Close]
BLAST of NO03G04610 vs. NCBI_GenBank
Match: XP_008609372.1 (dynein light chain roadblock-type [Saprolegnia diclina VS20] >XP_012199850.1 hypothetical protein SPRG_05883 [Saprolegnia parasitica CBS 223.65] >XP_012213079.1 hypothetical protein SPRG_18251 [Saprolegnia parasitica CBS 223.65] >EQC37210.1 dynein light chain roadblock-type [Saprolegnia diclina VS20] >KDO16213.1 hypothetical protein SPRG_18251 [Saprolegnia parasitica CBS 223.65] >KDO29347.1 hypothetical protein SPRG_05883 [Saprolegnia parasitica CBS 223.65] >OQR97890.1 hypothetical protein ACHHYP_09879 [Achlya hypogyna])

HSP 1 Score: 106.3 bits (264), Expect = 5.700e-20
Identity = 50/100 (50.00%), Postives = 73/100 (73.00%), Query Frame = 0 
Query:    1 MSQVEETIERIKIKQGIEGYVITNKKGQVLRRFHTMSEERADAMAATVRQLALKAQNVARDLDPSNEFQYLRIKTKKHEVIAAIDNEFLVTVLQRWTPSS 101
            MS+VEET+ERIK  +G+EGYVI +K G VLRR   M    A+  ++ +++L  KA+ V RDL+P N+ QYLRI+ KK E++ A + EFLV V+Q+W+P++
Sbjct:    1 MSEVEETLERIKNHKGVEGYVIADKNGAVLRRHPHMDTASAERYSSFMKELTTKARGVVRDLNPKNDLQYLRIRLKKFEILVAHEKEFLVIVIQKWSPNA 100
[Close]
BLAST of NO03G04610 vs. NCBI_GenBank
Match: ETI35532.1 (hypothetical protein F443_18137 [Phytophthora parasitica P1569] >ETK75773.1 hypothetical protein L915_17663 [Phytophthora parasitica] >ETL29211.1 hypothetical protein L916_17556 [Phytophthora parasitica] >ETL82436.1 hypothetical protein L917_17396 [Phytophthora parasitica] >ETM35679.1 hypothetical protein L914_17449 [Phytophthora parasitica] >ETO64268.1 hypothetical protein F444_18159 [Phytophthora parasitica P1976] >ETP05352.1 hypothetical protein F441_18013 [Phytophthora parasitica CJ01A1] >ETP33490.1 hypothetical protein F442_17983 [Phytophthora parasitica P10297] >KUF77957.1 Dynein light chain roadblock-type 2 [Phytophthora nicotianae])

HSP 1 Score: 106.3 bits (264), Expect = 5.700e-20
Identity = 50/100 (50.00%), Postives = 72/100 (72.00%), Query Frame = 0 
Query:    1 MSQVEETIERIKIKQGIEGYVITNKKGQVLRRFHTMSEERADAMAATVRQLALKAQNVARDLDPSNEFQYLRIKTKKHEVIAAIDNEFLVTVLQRWTPSS 101
            MS+VEET+ERIK  +G+EGYVI ++ G VLRR   M    A+  A  +++L  KA+ V RDL+P N+ QY+RI+ KK E++ A + +FLV V+QRWTP++
Sbjct:    1 MSEVEETLERIKNHKGVEGYVIADRNGNVLRRHPQMQVSEAEKYALYMKELTTKARGVVRDLNPKNDLQYMRIRVKKLELLIAHEKDFLVVVIQRWTPTN 100
[Close]
BLAST of NO03G04610 vs. NCBI_GenBank
Match: OWZ10243.1 (hypothetical protein PHMEG_00016937 [Phytophthora megakarya])

HSP 1 Score: 105.9 bits (263), Expect = 7.400e-20
Identity = 50/100 (50.00%), Postives = 72/100 (72.00%), Query Frame = 0 
Query:    1 MSQVEETIERIKIKQGIEGYVITNKKGQVLRRFHTMSEERADAMAATVRQLALKAQNVARDLDPSNEFQYLRIKTKKHEVIAAIDNEFLVTVLQRWTPSS 101
            MS+VEET+ERIK  +G+EGYVI ++ G VLRR   M    A+  A  +++L  K++ V RDL+P N+ QY+RI+ KK E++ A + EFLV V+QRWTP++
Sbjct:    1 MSEVEETLERIKNHKGVEGYVIADRNGNVLRRHPQMQVAEAEKYALYMKELTTKSRGVVRDLNPKNDLQYMRIRVKKLELLIAHEKEFLVVVIQRWTPTN 100
[Close]
BLAST of NO03G04610 vs. NCBI_GenBank
Match: XP_009525512.1 (hypothetical protein PHYSODRAFT_262605 [Phytophthora sojae] >EGZ16454.1 hypothetical protein PHYSODRAFT_262605 [Phytophthora sojae])

HSP 1 Score: 105.1 bits (261), Expect = 1.300e-19
Identity = 50/100 (50.00%), Postives = 72/100 (72.00%), Query Frame = 0 
Query:    1 MSQVEETIERIKIKQGIEGYVITNKKGQVLRRFHTMSEERADAMAATVRQLALKAQNVARDLDPSNEFQYLRIKTKKHEVIAAIDNEFLVTVLQRWTPSS 101
            MS+VEET+ERIK  +G+EGYVI ++ G VLRR   M    A+  A  +++L  KA+ V RDL+P N+ QY+RI+ KK E++ A + +FLV V+QRWTP++
Sbjct:    1 MSEVEETLERIKNHKGVEGYVIADRNGNVLRRHPQMQVAEAEKYALYMKELTTKARGVVRDLNPKNDLQYMRIRVKKLELLIAHEMDFLVVVIQRWTPTN 100
[Close]
BLAST of NO03G04610 vs. NCBI_GenBank
Match: OQR93377.1 (hypothetical protein THRCLA_08457 [Thraustotheca clavata])

HSP 1 Score: 105.1 bits (261), Expect = 1.300e-19
Identity = 50/99 (50.51%), Postives = 72/99 (72.73%), Query Frame = 0 
Query:    1 MSQVEETIERIKIKQGIEGYVITNKKGQVLRRFHTMSEERADAMAATVRQLALKAQNVARDLDPSNEFQYLRIKTKKHEVIAAIDNEFLVTVLQRWTPS 100
            MS+VEET+ERIK  +G+EGYVI +K G VLRR   M    A+  ++ +++L  KA+ V RDL+P N+ QYLRI+ KK E++ A + EFLV V+Q+W+P+
Sbjct:  363 MSEVEETLERIKNHKGVEGYVIADKNGAVLRRHPHMDIASAERYSSFMKELTTKARGVVRDLNPKNDLQYLRIRLKKFEILVAHEKEFLVIVIQKWSPN 461
The following BLAST results are available for this feature:
BLAST of NO03G04610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009034990.14.500e-2557.00hypothetical protein AURANDRAFT_22926 [Aureococcus... [more]
XP_008869120.16.700e-2151.49hypothetical protein H310_06011 [Aphanomyces invad... [more]
XP_009826798.12.000e-2051.00hypothetical protein H257_04112 [Aphanomyces astac... [more]
POM62086.13.300e-2051.00Dynein light chain 2B [Phytophthora palmivora var.... [more]
XP_008912773.14.400e-2049.50hypothetical protein PPTG_16947 [Phytophthora para... [more]
XP_008609372.15.700e-2050.00dynein light chain roadblock-type [Saprolegnia dic... [more]
ETI35532.15.700e-2050.00hypothetical protein F443_18137 [Phytophthora para... [more]
OWZ10243.17.400e-2050.00hypothetical protein PHMEG_00016937 [Phytophthora ... [more]
XP_009525512.11.300e-1950.00hypothetical protein PHYSODRAFT_262605 [Phytophtho... [more]
OQR93377.11.300e-1950.51hypothetical protein THRCLA_08457 [Thraustotheca c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005425NSK005425Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04610.1NO03G04610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521987gene_1666Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04610.1NO03G04610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04610 ID=NO03G04610|Name=NO03G04610|organism=Nannochloropsis oceanica|type=gene|length=681bp
ATGgtgagtcctttcttttttgccgccacgccccccgccgcaaaacttat
acgccattttcacgctcccacaaaaatagTCGCAGGTCGAAGAGACCATT
GAGCGAATCAAGATTAAGCAAGGTATCGAAGGgtacgtggatgtgtcagc
tcaattctggcagtacctgtgtttaatttattctatgcttaccatcctct
cagGTACGTCATAACTAACAAGAAAGGCCAAGTCCTCCGCCGCTTCCATA
CTATGAGCGAGGAAAGGGCAGACGCTATGGCAGCCACCGTGCGGCAGCTA
GCCCTCAAAGCCCAAAATGTTGCTCGGGACCTGGACCCTTCGgtgagtct
ttgtgtgcgtatacatatatatacatgtagatatgagtgtggccactgga
ttgcctgtcaggggtacttggcgcctagcaaattatcccactttcttctg
tcacacaactgccctctctcttattttggtccacagAATGAATTTCAATA
TCTGCGCATAAAGACGAAGAAGCATGAGGTGATCGCCGCCATCGgtaggt
aaacgtttttgacctcatcaaagacgtgccacccgacacattatctcaca
tgttcctccgaccgccaccctcctatagATAACGAGTTCCTGGTGACGGT
CCTCCAGCGATGGACGCCTTCCAGCGCCTGA
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protein sequence of NO03G04610.1

>NO03G04610.1-protein ID=NO03G04610.1-protein|Name=NO03G04610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSQVEETIERIKIKQGIEGYVITNKKGQVLRRFHTMSEERADAMAATVRQ
LALKAQNVARDLDPSNEFQYLRIKTKKHEVIAAIDNEFLVTVLQRWTPSS
A*
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Synonyms
Publications