NO03G04610.1, NO03G04610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04610.1
Unique NameNO03G04610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length306
Alignment locationchr3:1324981..1325661 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1324981..1325661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04610.1 vs.
Match: XP_009034990.1 (hypothetical protein AURANDRAFT_22926 [Aureococcus anophagefferens]; EGB10166.1 hypothetical protein AURANDRAFT_22926 [Aureococcus anophagefferens])

HSP 1 Score: 123.2 bits (308), Expect = 4.500e-25
Identity = 57/100 (57.00%), Postives = 80/100 (80.00%), Query Frame = 0 
Query:    1 MSQVEETIERIKIKQGIEGYVITNKKGQVLRRFHTMSEERADAMAATVRQLALKAQNVARDLDPSNEFQYLRIKTKKHEVIAAIDNEFLVTVLQRWTPSS 101
            MS+VEET+ER+KI+ G+EGYVI +K+GQVLRR  +M++ +A+  A  + QL+ KA+ V RDL+P NE +YLR++ K+HEV+ A D EFLV V+QRWTP+S
Sbjct:    1 MSEVEETLERVKIQAGVEGYVICSKQGQVLRRLPSMTQAQAEIYADFMSQLSRKARGVVRDLNPKNELRYLRLRAKRHEVLVAFDQEFLVIVIQRWTPAS 100
The following BLAST results are available for this feature:
BLAST of NO03G04610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009034990.14.500e-2557.00hypothetical protein AURANDRAFT_22926 [Aureococcus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04610NO03G04610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04610.1NO03G04610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04610.1.cds1NO03G04610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04610.1.cds2NO03G04610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04610.1.cds3NO03G04610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04610.1.cds4NO03G04610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04610.1.cds5NO03G04610.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04610.1 ID=NO03G04610.1|Name=NO03G04610.1|organism=Nannochloropsis oceanica|type=mRNA|length=306bp
ATGTCGCAGGTCGAAGAGACCATTGAGCGAATCAAGATTAAGCAAGGTAT
CGAAGGGTACGTCATAACTAACAAGAAAGGCCAAGTCCTCCGCCGCTTCC
ATACTATGAGCGAGGAAAGGGCAGACGCTATGGCAGCCACCGTGCGGCAG
CTAGCCCTCAAAGCCCAAAATGTTGCTCGGGACCTGGACCCTTCGAATGA
ATTTCAATATCTGCGCATAAAGACGAAGAAGCATGAGGTGATCGCCGCCA
TCGATAACGAGTTCCTGGTGACGGTCCTCCAGCGATGGACGCCTTCCAGC
GCCTGA
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protein sequence of NO03G04610.1

>NO03G04610.1-protein ID=NO03G04610.1-protein|Name=NO03G04610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSQVEETIERIKIKQGIEGYVITNKKGQVLRRFHTMSEERADAMAATVRQ
LALKAQNVARDLDPSNEFQYLRIKTKKHEVIAAIDNEFLVTVLQRWTPSS
A*
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mRNA from alignment at chr3:1324981..1325661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04610.1 ID=NO03G04610.1|Name=NO03G04610.1|organism=Nannochloropsis oceanica|type=mRNA|length=681bp|location=Sequence derived from alignment at chr3:1324981..1325661- (Nannochloropsis oceanica)
ATGGTGAGTCCTTTCTTTTTTGCCGCCACGCCCCCCGCCGCAAAACTTAT
ACGCCATTTTCACGCTCCCACAAAAATAGTCGCAGGTCGAAGAGACCATT
GAGCGAATCAAGATTAAGCAAGGTATCGAAGGGTACGTGGATGTGTCAGC
TCAATTCTGGCAGTACCTGTGTTTAATTTATTCTATGCTTACCATCCTCT
CAGGTACGTCATAACTAACAAGAAAGGCCAAGTCCTCCGCCGCTTCCATA
CTATGAGCGAGGAAAGGGCAGACGCTATGGCAGCCACCGTGCGGCAGCTA
GCCCTCAAAGCCCAAAATGTTGCTCGGGACCTGGACCCTTCGGTGAGTCT
TTGTGTGCGTATACATATATATACATGTAGATATGAGTGTGGCCACTGGA
TTGCCTGTCAGGGGTACTTGGCGCCTAGCAAATTATCCCACTTTCTTCTG
TCACACAACTGCCCTCTCTCTTATTTTGGTCCACAGAATGAATTTCAATA
TCTGCGCATAAAGACGAAGAAGCATGAGGTGATCGCCGCCATCGGTAGGT
AAACGTTTTTGACCTCATCAAAGACGTGCCACCCGACACATTATCTCACA
TGTTCCTCCGACCGCCACCCTCCTATAGATAACGAGTTCCTGGTGACGGT
CCTCCAGCGATGGACGCCTTCCAGCGCCTGA
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Coding sequence (CDS) from alignment at chr3:1324981..1325661-

>NO03G04610.1 ID=NO03G04610.1|Name=NO03G04610.1|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at chr3:1324981..1325661- (Nannochloropsis oceanica)
ATGTCGCAGGTCGAAGAGACCATTGAGCGAATCAAGATTAAGCAAGGTAT
CGAAGGGTACGTCATAACTAACAAGAAAGGCCAAGTCCTCCGCCGCTTCC
ATACTATGAGCGAGGAAAGGGCAGACGCTATGGCAGCCACCGTGCGGCAG
CTAGCCCTCAAAGCCCAAAATGTTGCTCGGGACCTGGACCCTTCGAATGA
ATTTCAATATCTGCGCATAAAGACGAAGAAGCATGAGGTGATCGCCGCCA
TCGATAACGAGTTCCTGGTGACGGTCCTCCAGCGATGGACGCCTTCCAGC
GCCTGA
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Synonyms
Publications