NO03G04340, NO03G04340 (gene) Nannochloropsis oceanica

Overview
NameNO03G04340
Unique NameNO03G04340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length727
Alignment locationchr3:1251885..1252611 +

Link to JBrowse

Properties
Property NameValue
DescriptionTranslation elongation factor p
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1251885..1252611 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0043043peptide biosynthetic process
GO:0006414translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003746translation elongation factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR008991Translation_prot_SH3-like
IPR020599Transl_elong_fac_P/YeiP
IPR013185Transl_elong_KOW-like
IPR015365Elong-fact-P_C
IPR001059Transl_elong_P/YeiP_cen
Homology
[Close]
BLAST of NO03G04340 vs. NCBI_GenBank
Match: XP_005852737.1 (translation elongation factor p [Nannochloropsis gaditana CCMP526] >EKU23092.1 translation elongation factor p [Nannochloropsis gaditana CCMP526] >EWM29800.1 translation elongation factor p [Nannochloropsis gaditana])

HSP 1 Score: 315.8 bits (808), Expect = 8.700e-83
Identity = 157/186 (84.41%), Postives = 179/186 (96.24%), Query Frame = 0 
Query:    2 INGNQVRVGNVLEYKGKLVVVRRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRSSESVEKVRLDEEQPFDYLYDEGDKLILMNKEDFTQVEVLKDMLSETEQKFLEEGLTLRVQLYEGSPLLVRLPKTMVMEVVSTEQFSKGNQASPTFKPATLRNGEVIKVPPFVEVGEKVVIDTEEMEYQSRV 188
            INGNQVRVGNVLEYKGKLV+V+RAQAVKPGKGGAFNQVELRDIRTGLKYHERLR+SESVEKVRLD+E+ +DYLY+EGDKL+LMNK+DFTQ+EV +++LSETEQKFL+EGLTLRVQ +EGSPLLVRLP+T+V+EV STE FSKG+QASPTFKPATL NGEV+KVPPFV VGEKV+I+TEEMEYQSRV
Sbjct:   48 INGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSRV 233
[Close]
BLAST of NO03G04340 vs. NCBI_GenBank
Match: WP_075997283.1 (elongation factor P [Nitratireductor basaltis])

HSP 1 Score: 177.9 bits (450), Expect = 2.800e-41
Identity = 89/185 (48.11%), Postives = 129/185 (69.73%), Query Frame = 0 
Query:    2 INGNQVRVGNVLEYKGKLVVVRRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRSSESVEKVRLDEEQPFDYLYDEGDKLILMNKEDFTQVEVLKDMLSETEQKFLEEGLTLRVQLYEGSPLLVRLPKTMVMEVVSTEQFSKGNQASPTFKPATLRNGEVIKVPPFVEVGEKVVIDTEEMEYQSR 187
            INGNQ++ GNVLE+ G+L  V +   VKPGKGGAF QVE++++  G K +ER R++ESVEKVRL E++ F YLY++GD L+ M+ E + Q+E+ KD + +    FL++G+ + V++YE  P+ + LP  +V+EV+ TE   KG   S ++KP+TL NG    VPPFV  GEK+V+DT E+ Y  R
Sbjct:    3 INGNQIKPGNVLEHNGQLWAVVKTDHVKPGKGGAFAQVEMKNLLNGSKLNERFRATESVEKVRL-EQKDFQYLYEQGDMLVFMDNESYEQLELAKDFVGD-RAAFLQDGMMVTVEMYEEKPIGISLPDQVVLEVIETEPVVKGQTVSSSYKPSTLENGVRCMVPPFVSAGEKIVVDTSEIAYLRR 185
[Close]
BLAST of NO03G04340 vs. NCBI_GenBank
Match: WP_099307430.1 (elongation factor P [Phyllobacteriaceae bacterium X9-2-2] >PHP66166.1 elongation factor P [Phyllobacteriaceae bacterium X9-2-2])

HSP 1 Score: 177.9 bits (450), Expect = 2.800e-41
Identity = 87/185 (47.03%), Postives = 130/185 (70.27%), Query Frame = 0 
Query:    2 INGNQVRVGNVLEYKGKLVVVRRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRSSESVEKVRLDEEQPFDYLYDEGDKLILMNKEDFTQVEVLKDMLSETEQKFLEEGLTLRVQLYEGSPLLVRLPKTMVMEVVSTEQFSKGNQASPTFKPATLRNGEVIKVPPFVEVGEKVVIDTEEMEYQSR 187
            INGN++R GNV+E+ G L V  +  AVKPGKGGAFNQVEL+++  G K +ER R+SE+VEKVRL E++ F YLY+EG+ L+ M++E F Q+E+ KD + +    FL+EG+ + V+LYE  P+ + LP  + + +   +   KG  A+ ++KPA L NG  + VPPF+E GE++++DT+E+ Y  R
Sbjct:    3 INGNEIRPGNVIEHNGGLWVAVKTNAVKPGKGGAFNQVELKNLIDGTKLNERFRASETVEKVRL-EQKDFSYLYEEGEMLVFMDQESFEQLELQKDFVGD-RSAFLQEGMIVTVELYEEKPIGISLPTQVTLAIAEADPVVKGQTAASSYKPAVLENGVRVMVPPFIESGERIIVDTDELTYVRR 185
[Close]
BLAST of NO03G04340 vs. NCBI_GenBank
Match: WP_023433030.1 (elongation factor P [Lutibaculum baratangense] >ESR23677.1 Translation elongation factor P [Lutibaculum baratangense AMV1])

HSP 1 Score: 177.2 bits (448), Expect = 4.800e-41
Identity = 89/185 (48.11%), Postives = 131/185 (70.81%), Query Frame = 0 
Query:    2 INGNQVRVGNVLEYKGKLVVVRRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRSSESVEKVRLDEEQPFDYLYDEGDKLILMNKEDFTQVEVLKDMLSETEQKFLEEGLTLRVQLYEGSPLLVRLPKTMVMEVVSTEQFSKGNQASPTFKPATLRNGEVIKVPPFVEVGEKVVIDTEEMEYQSR 187
            INGN++R GNV+E+ G L V  + QAVKPGKGGAFNQVEL+++  G K +ER R+SE+VE+VRLD++  F +LY EG+ L+ M+ + + Q+E+ +D + E    FL++G+ + V++YEG P+ + LP+ + + V   +   KG  A+ ++KPA L NG  I VPPFVE GE+VV+DTEE+ Y  R
Sbjct:    3 INGNEIRPGNVIEHDGGLWVAVKTQAVKPGKGGAFNQVELKNLINGTKLNERFRASETVERVRLDQKD-FQFLYAEGENLVFMDSDTYEQLELARDWVGE-RAAFLQDGMVVTVEMYEGRPIGISLPQQVTLGVAEADPVVKGQTAASSYKPAVLENGVRILVPPFVESGERVVVDTEELTYVRR 185
[Close]
BLAST of NO03G04340 vs. NCBI_GenBank
Match: WP_007876600.1 (MULTISPECIES: elongation factor P [Ochrobactrum] >EMG53796.1 elongation factor P [Ochrobactrum sp. CDB2] >ANG98440.1 elongation factor P [Ochrobactrum pseudogrignonense] >OYR28915.1 translation elongation factor P [Ochrobactrum pseudogrignonense] >PQZ44680.1 elongation factor P [Ochrobactrum pseudogrignonense] >PRA38346.1 elongation factor P [Ochrobactrum pseudogrignonense] >PRA64189.1 elongation factor P [Ochrobactrum pseudogrignonense])

HSP 1 Score: 176.0 bits (445), Expect = 1.100e-40
Identity = 86/185 (46.49%), Postives = 133/185 (71.89%), Query Frame = 0 
Query:    2 INGNQVRVGNVLEYKGKLVVVRRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRSSESVEKVRLDEEQPFDYLYDEGDKLILMNKEDFTQVEVLKDMLSETEQKFLEEGLTLRVQLYEGSPLLVRLPKTMVMEVVSTEQFSKGNQASPTFKPATLRNGEVIKVPPFVEVGEKVVIDTEEMEYQSR 187
            INGN++R GNV+E+ G L    +  AVKPGKGGA+NQVEL+++ TG K +ER R++E+VE+VRL E++ F +LY++G+ L+ M+ E + Q+E+LKD + +    FL++G+ + V+LYE  P+ +RLP+ + + +V  +   KG  A+ ++KPA L NG  I VPPF+E GE+V++DT E+ Y SR
Sbjct:    3 INGNEIRPGNVIEHDGGLWAAVKTNAVKPGKGGAYNQVELKNLITGTKLNERFRAAETVERVRL-EQKDFSFLYEQGEALVFMDTESYEQLELLKDFVGD-RAAFLQDGMMVTVELYEEKPIGIRLPEQVTLAIVEADPVVKGQTAASSYKPAILENGIRILVPPFIESGERVIVDTSELTYISR 185
[Close]
BLAST of NO03G04340 vs. NCBI_GenBank
Match: KYB46001.1 (elongation factor P, partial [Ochrobactrum anthropi])

HSP 1 Score: 176.0 bits (445), Expect = 1.100e-40
Identity = 86/185 (46.49%), Postives = 133/185 (71.89%), Query Frame = 0 
Query:    2 INGNQVRVGNVLEYKGKLVVVRRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRSSESVEKVRLDEEQPFDYLYDEGDKLILMNKEDFTQVEVLKDMLSETEQKFLEEGLTLRVQLYEGSPLLVRLPKTMVMEVVSTEQFSKGNQASPTFKPATLRNGEVIKVPPFVEVGEKVVIDTEEMEYQSR 187
            INGN++R GNV+E+ G L    +  AVKPGKGGA+NQVEL+++ TG K +ER R++E+VE+VRL E++ F +LY++G+ L+ M+ E + Q+E+LKD + +    FL++G+ + V+LYE  P+ +RLP+ + + +V  +   KG  A+ ++KPA L NG  I VPPF+E GE+V++DT E+ Y SR
Sbjct:   10 INGNEIRPGNVIEHDGGLWAAVKTNAVKPGKGGAYNQVELKNLITGTKLNERFRAAETVERVRL-EQKDFSFLYEQGEALVFMDTESYEQLELLKDFVGD-RAAFLQDGMMVTVELYEEKPIGIRLPEQVTLAIVEADPVVKGQTAASSYKPAILENGIRILVPPFIESGERVIVDTSELTYISR 192
[Close]
BLAST of NO03G04340 vs. NCBI_GenBank
Match: AQS40910.1 (Elongation factor P [Candidatus Tokpelaia hoelldoblerii])

HSP 1 Score: 175.3 bits (443), Expect = 1.800e-40
Identity = 85/185 (45.95%), Postives = 130/185 (70.27%), Query Frame = 0 
Query:    2 INGNQVRVGNVLEYKGKLVVVRRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRSSESVEKVRLDEEQPFDYLYDEGDKLILMNKEDFTQVEVLKDMLSETEQKFLEEGLTLRVQLYEGSPLLVRLPKTMVMEVVSTEQFSKGNQASPTFKPATLRNGEVIKVPPFVEVGEKVVIDTEEMEYQSR 187
            INGN++R GNV+E+ G L V  +  AVKPGKGGAFNQVEL+++  G K +ER R++E+VEKVRL E++ F +LY++GD L+ M+ E + Q+E+ KD + +    FL++G+T+ V+LYE  P+ + LP  +V+ +   +   KG  A+ ++KPA + NG  + VPPF+E GE++V+DT E+ Y  R
Sbjct:    3 INGNEIRPGNVIEHNGSLWVAVKCNAVKPGKGGAFNQVELKNLLDGTKLNERFRAAETVEKVRL-EQKDFTFLYEQGDALVFMDSESYEQLELQKDFVGD-RAAFLQDGMTVTVELYEEKPIGISLPDQVVLTIAEADPVVKGQTAASSYKPAVMENGIRVMVPPFIETGERIVVDTNEIIYLRR 185
[Close]
BLAST of NO03G04340 vs. NCBI_GenBank
Match: WP_024895723.1 (MULTISPECIES: elongation factor P [Ochrobactrum] >PJO46268.1 elongation factor P [Ochrobactrum pituitosum] >PQZ47432.1 elongation factor P [Ochrobactrum sp. MYb19] >PRA53431.1 elongation factor P [Ochrobactrum sp. MYb68] >PRA62121.1 elongation factor P [Ochrobactrum sp. MYb18] >PRA77475.1 elongation factor P [Ochrobactrum thiophenivorans] >PRA85263.1 elongation factor P [Ochrobactrum sp. MYb29] >PRA87484.1 elongation factor P [Ochrobactrum sp. MYb14] >PRA99485.1 elongation factor P [Ochrobactrum sp. MYb15])

HSP 1 Score: 174.5 bits (441), Expect = 3.100e-40
Identity = 86/185 (46.49%), Postives = 132/185 (71.35%), Query Frame = 0 
Query:    2 INGNQVRVGNVLEYKGKLVVVRRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRSSESVEKVRLDEEQPFDYLYDEGDKLILMNKEDFTQVEVLKDMLSETEQKFLEEGLTLRVQLYEGSPLLVRLPKTMVMEVVSTEQFSKGNQASPTFKPATLRNGEVIKVPPFVEVGEKVVIDTEEMEYQSR 187
            INGN++R GNV+E+ G L    +  AVKPGKGGA+NQVEL+++ TG K +ER R++E+VE+VRL E++ F +LY++G+ LI M+ E + Q+E+LKD + +    FL++G+ + V+LYE  P+ +RLP+ + + +V  +   KG  A+ ++KPA L NG  I VPPF+  GE+V++DT E+ Y SR
Sbjct:    3 INGNEIRPGNVIEHDGGLWAAVKTNAVKPGKGGAYNQVELKNLITGTKLNERFRAAETVERVRL-EQKDFSFLYEQGEALIFMDTESYEQLELLKDFVGD-RAAFLQDGMMVTVELYEEKPIGIRLPEQVTLAIVEADPVVKGQTAASSYKPAVLENGIRILVPPFIASGERVIVDTSELTYISR 185
[Close]
BLAST of NO03G04340 vs. NCBI_GenBank
Match: OJU00513.1 (elongation factor P [Rhizobiales bacterium 65-79])

HSP 1 Score: 174.5 bits (441), Expect = 3.100e-40
Identity = 85/185 (45.95%), Postives = 129/185 (69.73%), Query Frame = 0 
Query:    2 INGNQVRVGNVLEYKGKLVVVRRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRSSESVEKVRLDEEQPFDYLYDEGDKLILMNKEDFTQVEVLKDMLSETEQKFLEEGLTLRVQLYEGSPLLVRLPKTMVMEVVSTEQFSKGNQASPTFKPATLRNGEVIKVPPFVEVGEKVVIDTEEMEYQSR 187
            INGN++R GNV+E+ G L V  +  AVKPGKGGA+NQVEL+++  G K +ER RS+E+VEKVRL E++ F +LY++GD L+ M+ E + Q+E+ KD + +    FL++G+T+ V+LYE  P+ + LP  + +E+   +   KG  A+ ++KPA L NG  + VPPF+  GE++V+DT E+ Y  R
Sbjct:    4 INGNEIRPGNVIEHNGGLWVAVKTNAVKPGKGGAYNQVELKNLIDGTKLNERFRSAETVEKVRL-EQKDFTFLYEQGDALVFMDSESYEQLELQKDFVGD-RAAFLQDGMTVTVELYEEKPIGISLPDQVTLEITEADPVVKGQTAASSYKPAVLENGVRVLVPPFISAGERIVVDTNEITYLRR 186
[Close]
BLAST of NO03G04340 vs. NCBI_GenBank
Match: OUT75415.1 (elongation factor P [Rhizobiales bacterium TMED25])

HSP 1 Score: 174.1 bits (440), Expect = 4.100e-40
Identity = 89/185 (48.11%), Postives = 125/185 (67.57%), Query Frame = 0 
Query:    2 INGNQVRVGNVLEYKGKLVVVRRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRSSESVEKVRLDEEQPFDYLYDEGDKLILMNKEDFTQVEVLKDMLSETEQKFLEEGLTLRVQLYEGSPLLVRLPKTMVMEVVSTEQFSKGNQASPTFKPATLRNGEVIKVPPFVEVGEKVVIDTEEMEYQSR 187
            INGNQ+R+GN+LE+KG L VV +AQAVKPGKGGAFNQVEL+ +    K +ER R+ E VEK R+D E  F YLY    +LI MN + F Q+  L+  L E ++  L+EG+ ++++LYEG P+ V  P+T+ + V+ TE   KG  A+ + KPA L N   + VPPF+  GE++++DT E+ Y  R
Sbjct:    3 INGNQIRIGNILEHKGSLWVVTKAQAVKPGKGGAFNQVELKSVIDTTKLNERFRADEIVEKARIDTED-FQYLYSNDSELIFMNNQTFEQIS-LEQKLIEEKRLLLKEGMVVQIELYEGKPVGVIFPETVTLRVIDTEPAIKGQTAASSSKPAILENDMRVMVPPFINNGEEIIVDTNELSYIKR 185
The following BLAST results are available for this feature:
BLAST of NO03G04340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852737.18.700e-8384.41translation elongation factor p [Nannochloropsis g... [more]
WP_075997283.12.800e-4148.11elongation factor P [Nitratireductor basaltis][more]
WP_099307430.12.800e-4147.03elongation factor P [Phyllobacteriaceae bacterium ... [more]
WP_023433030.14.800e-4148.11elongation factor P [Lutibaculum baratangense] >ES... [more]
WP_007876600.11.100e-4046.49MULTISPECIES: elongation factor P [Ochrobactrum] >... [more]
KYB46001.11.100e-4046.49elongation factor P, partial [Ochrobactrum anthrop... [more]
AQS40910.11.800e-4045.95Elongation factor P [Candidatus Tokpelaia hoelldob... [more]
WP_024895723.13.100e-4046.49MULTISPECIES: elongation factor P [Ochrobactrum] >... [more]
OJU00513.13.100e-4045.95elongation factor P [Rhizobiales bacterium 65-79][more]
OUT75415.14.100e-4048.11elongation factor P [Rhizobiales bacterium TMED25][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005483NSK005483Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04340.1NO03G04340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572935gene_1633Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100017g15gene790Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04340.1NO03G04340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04340 ID=NO03G04340|Name=NO03G04340|organism=Nannochloropsis oceanica|type=gene|length=727bp
ATGATCAATGGAAACCAAGTCCGGGTGGGCAATGTGCTTGAATACAAGGG
GAAGCTTGTGGTTGTCAGAAGAGCTCAAGCGGTCAAGCCAGGGAAAGGTG
GCGCGTTTAATCAGGTGGAGTTGCGTGACATCCGGACAGgtgtgtgctag
tgttggctcatggagaagggggaggggatatagtgagagactaggtgtga
aaggctagccgtgcctaggacgcgacgatgggaaagtgtcgccccagcaa
ggaggctcgcatgcatcatcattttctacccctactcttatccccacgac
agGCCTCAAATATCACGAGCGGCTGCGCTCCTCAGAAAGTGTGGAAAAAG
TCCGGCTAGACGAAGAGCAGCCATTTGACTACCTATACGATGAAGGAGAC
AAATTGATCTTAATGAACAAAGAGGACTTCACTCAAGTCGAAGTCCTGAA
AGACATGCTTTCAGAAACGGAGCAGAAATTCTTGGAGGAGGGTCTAACGT
TGCGCGTGCAGCTTTATGAAGGGAGTCCGTTGTTGGTGCGCTTGCCAAAG
ACAATGGTAATGGAGGTGGTGAGCACGGAGCAGTTTAGCAAGGGAAATCA
GGCCAGTCCTACATTTAAGCCGGCAACATTGAGGAACGGGGAGGTAATTA
AAGTGCCACCTTTCGTGGAGGTGGGGGAAAAGGTGGTGATTGATACGGAG
GAGATGGAGTACCAATCACGGGTGTAA
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protein sequence of NO03G04340.1

>NO03G04340.1-protein ID=NO03G04340.1-protein|Name=NO03G04340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MINGNQVRVGNVLEYKGKLVVVRRAQAVKPGKGGAFNQVELRDIRTGLKY
HERLRSSESVEKVRLDEEQPFDYLYDEGDKLILMNKEDFTQVEVLKDMLS
ETEQKFLEEGLTLRVQLYEGSPLLVRLPKTMVMEVVSTEQFSKGNQASPT
FKPATLRNGEVIKVPPFVEVGEKVVIDTEEMEYQSRV*
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Synonyms
Publications