NO03G04340.1, NO03G04340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04340.1
Unique NameNO03G04340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length564
Alignment locationchr3:1251885..1252611 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1251885..1252611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04340.1 vs.
Match: XP_005852737.1 (translation elongation factor p [Nannochloropsis gaditana CCMP526]; EKU23092.1 translation elongation factor p [Nannochloropsis gaditana CCMP526]; EWM29800.1 translation elongation factor p [Nannochloropsis gaditana])

HSP 1 Score: 315.8 bits (808), Expect = 8.700e-83
Identity = 157/186 (84.41%), Postives = 179/186 (96.24%), Query Frame = 0 
Query:    2 INGNQVRVGNVLEYKGKLVVVRRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRSSESVEKVRLDEEQPFDYLYDEGDKLILMNKEDFTQVEVLKDMLSETEQKFLEEGLTLRVQLYEGSPLLVRLPKTMVMEVVSTEQFSKGNQASPTFKPATLRNGEVIKVPPFVEVGEKVVIDTEEMEYQSRV 188
            INGNQVRVGNVLEYKGKLV+V+RAQAVKPGKGGAFNQVELRDIRTGLKYHERLR+SESVEKVRLD+E+ +DYLY+EGDKL+LMNK+DFTQ+EV +++LSETEQKFL+EGLTLRVQ +EGSPLLVRLP+T+V+EV STE FSKG+QASPTFKPATL NGEV+KVPPFV VGEKV+I+TEEMEYQSRV
Sbjct:   48 INGNQVRVGNVLEYKGKLVMVKRAQAVKPGKGGAFNQVELRDIRTGLKYHERLRASESVEKVRLDDEELYDYLYEEGDKLVLMNKQDFTQIEVSRNVLSETEQKFLQEGLTLRVQFHEGSPLLVRLPRTLVVEVASTEPFSKGSQASPTFKPATLSNGEVLKVPPFVGVGEKVIINTEEMEYQSRV 233
The following BLAST results are available for this feature:
BLAST of NO03G04340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852737.18.700e-8384.41translation elongation factor p [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04340NO03G04340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04340.1NO03G04340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04340.1.cds1NO03G04340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04340.1.cds2NO03G04340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04340.1 ID=NO03G04340.1|Name=NO03G04340.1|organism=Nannochloropsis oceanica|type=mRNA|length=564bp
ATGATCAATGGAAACCAAGTCCGGGTGGGCAATGTGCTTGAATACAAGGG
GAAGCTTGTGGTTGTCAGAAGAGCTCAAGCGGTCAAGCCAGGGAAAGGTG
GCGCGTTTAATCAGGTGGAGTTGCGTGACATCCGGACAGGCCTCAAATAT
CACGAGCGGCTGCGCTCCTCAGAAAGTGTGGAAAAAGTCCGGCTAGACGA
AGAGCAGCCATTTGACTACCTATACGATGAAGGAGACAAATTGATCTTAA
TGAACAAAGAGGACTTCACTCAAGTCGAAGTCCTGAAAGACATGCTTTCA
GAAACGGAGCAGAAATTCTTGGAGGAGGGTCTAACGTTGCGCGTGCAGCT
TTATGAAGGGAGTCCGTTGTTGGTGCGCTTGCCAAAGACAATGGTAATGG
AGGTGGTGAGCACGGAGCAGTTTAGCAAGGGAAATCAGGCCAGTCCTACA
TTTAAGCCGGCAACATTGAGGAACGGGGAGGTAATTAAAGTGCCACCTTT
CGTGGAGGTGGGGGAAAAGGTGGTGATTGATACGGAGGAGATGGAGTACC
AATCACGGGTGTAA
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protein sequence of NO03G04340.1

>NO03G04340.1-protein ID=NO03G04340.1-protein|Name=NO03G04340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MINGNQVRVGNVLEYKGKLVVVRRAQAVKPGKGGAFNQVELRDIRTGLKY
HERLRSSESVEKVRLDEEQPFDYLYDEGDKLILMNKEDFTQVEVLKDMLS
ETEQKFLEEGLTLRVQLYEGSPLLVRLPKTMVMEVVSTEQFSKGNQASPT
FKPATLRNGEVIKVPPFVEVGEKVVIDTEEMEYQSRV*
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mRNA from alignment at chr3:1251885..1252611+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04340.1 ID=NO03G04340.1|Name=NO03G04340.1|organism=Nannochloropsis oceanica|type=mRNA|length=727bp|location=Sequence derived from alignment at chr3:1251885..1252611+ (Nannochloropsis oceanica)
ATGATCAATGGAAACCAAGTCCGGGTGGGCAATGTGCTTGAATACAAGGG
GAAGCTTGTGGTTGTCAGAAGAGCTCAAGCGGTCAAGCCAGGGAAAGGTG
GCGCGTTTAATCAGGTGGAGTTGCGTGACATCCGGACAGGTGTGTGCTAG
TGTTGGCTCATGGAGAAGGGGGAGGGGATATAGTGAGAGACTAGGTGTGA
AAGGCTAGCCGTGCCTAGGACGCGACGATGGGAAAGTGTCGCCCCAGCAA
GGAGGCTCGCATGCATCATCATTTTCTACCCCTACTCTTATCCCCACGAC
AGGCCTCAAATATCACGAGCGGCTGCGCTCCTCAGAAAGTGTGGAAAAAG
TCCGGCTAGACGAAGAGCAGCCATTTGACTACCTATACGATGAAGGAGAC
AAATTGATCTTAATGAACAAAGAGGACTTCACTCAAGTCGAAGTCCTGAA
AGACATGCTTTCAGAAACGGAGCAGAAATTCTTGGAGGAGGGTCTAACGT
TGCGCGTGCAGCTTTATGAAGGGAGTCCGTTGTTGGTGCGCTTGCCAAAG
ACAATGGTAATGGAGGTGGTGAGCACGGAGCAGTTTAGCAAGGGAAATCA
GGCCAGTCCTACATTTAAGCCGGCAACATTGAGGAACGGGGAGGTAATTA
AAGTGCCACCTTTCGTGGAGGTGGGGGAAAAGGTGGTGATTGATACGGAG
GAGATGGAGTACCAATCACGGGTGTAA
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Coding sequence (CDS) from alignment at chr3:1251885..1252611+

>NO03G04340.1 ID=NO03G04340.1|Name=NO03G04340.1|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at chr3:1251885..1252611+ (Nannochloropsis oceanica)
ATGATCAATGGAAACCAAGTCCGGGTGGGCAATGTGCTTGAATACAAGGG
GAAGCTTGTGGTTGTCAGAAGAGCTCAAGCGGTCAAGCCAGGGAAAGGTG
GCGCGTTTAATCAGGTGGAGTTGCGTGACATCCGGACAGGCCTCAAATAT
CACGAGCGGCTGCGCTCCTCAGAAAGTGTGGAAAAAGTCCGGCTAGACGA
AGAGCAGCCATTTGACTACCTATACGATGAAGGAGACAAATTGATCTTAA
TGAACAAAGAGGACTTCACTCAAGTCGAAGTCCTGAAAGACATGCTTTCA
GAAACGGAGCAGAAATTCTTGGAGGAGGGTCTAACGTTGCGCGTGCAGCT
TTATGAAGGGAGTCCGTTGTTGGTGCGCTTGCCAAAGACAATGGTAATGG
AGGTGGTGAGCACGGAGCAGTTTAGCAAGGGAAATCAGGCCAGTCCTACA
TTTAAGCCGGCAACATTGAGGAACGGGGAGGTAATTAAAGTGCCACCTTT
CGTGGAGGTGGGGGAAAAGGTGGTGATTGATACGGAGGAGATGGAGTACC
AATCACGGGTGTAA
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Synonyms
Publications