NO03G04180, NO03G04180 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G04180 vs. NCBI_GenBank
Match: OQR98120.1 (U6 snRNA-associated Sm-like protein LSm1-like isoform X1 [Achlya hypogyna]) HSP 1 Score: 119.4 bits (298), Expect = 2.100e-23 Identity = 58/114 (50.88%), Postives = 85/114 (74.56%), Query Frame = 0 Query: 216 PGAASLFEQLDKQIMVVLRDGRNLVGILRSFDQYSNMVLEDTYERHVVDDKYGDLPLGLYLVRGDSMVMLGEVDPARESEA--LVKVTADEIIELLQESVEAG---AKLEWDFE 325 PG S+ E LDKQ++VVLRDGR+LVG+ RSFDQYSN+VL+DT ERHVV + Y D+PLGLY++RG+++V++GE+D +E+ LVK T +E++ + +AG + W+F+ Sbjct: 5 PGVTSMTELLDKQMLVVLRDGRHLVGMFRSFDQYSNIVLQDTCERHVVGNTYCDIPLGLYIIRGENIVIMGELDQEKEASQVNLVKKTPEEVLAAEADQNDAGVATVRGTWNFD 118
BLAST of NO03G04180 vs. NCBI_GenBank
Match: XP_008614514.1 (hypothetical protein SDRG_10308 [Saprolegnia diclina VS20] >EQC32112.1 hypothetical protein SDRG_10308 [Saprolegnia diclina VS20]) HSP 1 Score: 119.0 bits (297), Expect = 2.700e-23 Identity = 57/114 (50.00%), Postives = 85/114 (74.56%), Query Frame = 0 Query: 216 PGAASLFEQLDKQIMVVLRDGRNLVGILRSFDQYSNMVLEDTYERHVVDDKYGDLPLGLYLVRGDSMVMLGEVDPARESEA--LVKVTADEIIELLQESVEAGA---KLEWDFE 325 PG S+ E LDKQ++VVLRDGR+LVG+ RSFDQYSN+VL+DT ERHVV + Y D+PLGLY++RG+++V++GE+D +E+ L+K T +E++ + + GA + W+F+ Sbjct: 5 PGVTSMTELLDKQMLVVLRDGRHLVGVFRSFDQYSNIVLQDTCERHVVGNTYCDIPLGLYIIRGENIVIMGELDQEKEASQVNLIKKTPEEVLAAEADLHDTGAVTVRGTWNFD 118
BLAST of NO03G04180 vs. NCBI_GenBank
Match: XP_001894349.1 (U6 snRNA-associated Sm-like protein LSm [Brugia malayi] >EJW85479.1 LSM1 protein [Wuchereria bancrofti] >CRZ24112.1 BMA-LSM-1 [Brugia malayi]) HSP 1 Score: 118.2 bits (295), Expect = 4.600e-23 Identity = 57/112 (50.89%), Postives = 83/112 (74.11%), Query Frame = 0 Query: 211 LPD-YLPGAASLFEQLDKQIMVVLRDGRNLVGILRSFDQYSNMVLEDTYERHVVDDKYGDLPLGLYLVRGDSMVMLGEVDPARES-EALVKVTADEIIELLQESVEAGAKLE 321 LPD YLPGA SL EQLDK+++VVLRDGR L+G LR+ DQ++N+VL +T ER VD+ YGD+ G++L+RG+++V+ GE+D +E L+ ++A EI+ L QE +E + E Sbjct: 3 LPDPYLPGALSLLEQLDKKLLVVLRDGRTLIGYLRTIDQFANLVLHETLERIHVDNYYGDIERGVFLIRGENVVLAGEIDETKEQLSGLIPLSAKEILSLQQEKIEEKERFE 114
BLAST of NO03G04180 vs. NCBI_GenBank
Match: KHN77802.1 (U6 snRNA-associated Sm-like protein LSm1 [Toxocara canis]) HSP 1 Score: 117.9 bits (294), Expect = 6.000e-23 Identity = 56/112 (50.00%), Postives = 82/112 (73.21%), Query Frame = 0 Query: 211 LPD-YLPGAASLFEQLDKQIMVVLRDGRNLVGILRSFDQYSNMVLEDTYERHVVDDKYGDLPLGLYLVRGDSMVMLGEVDPARESE-ALVKVTADEIIELLQESVEAGAKLE 321 LPD YLPGA SL +QLDK+++V+LRDGR L+G LR+ DQ++N+VL +T ER VD YGD+P G++L+RG+++V+ GE+D +E L V+ DEI+ + +E EA + E Sbjct: 3 LPDPYLPGAISLLDQLDKKLLVILRDGRTLIGYLRTIDQFANLVLHETLERIHVDKYYGDIPRGIFLIRGENVVLAGEIDEQKEKHTGLTCVSVDEILSMQREKTEAKERFE 114
BLAST of NO03G04180 vs. NCBI_GenBank
Match: OQR92259.1 (hypothetical protein THRCLA_22395 [Thraustotheca clavata]) HSP 1 Score: 117.9 bits (294), Expect = 6.000e-23 Identity = 57/114 (50.00%), Postives = 84/114 (73.68%), Query Frame = 0 Query: 216 PGAASLFEQLDKQIMVVLRDGRNLVGILRSFDQYSNMVLEDTYERHVVDDKYGDLPLGLYLVRGDSMVMLGEVDPARESEA--LVKVTADEIIELLQESVEAG---AKLEWDFE 325 PG S+ E LDKQ++VVLRDGR+LVGI RSFDQYSN+VL++T ERHVV + Y D+PLGLY++RGD++V++GE+D +E+ L+K + +E++ + E G + W+F+ Sbjct: 5 PGVTSMTELLDKQMLVVLRDGRHLVGIFRSFDQYSNIVLQETCERHVVGNTYCDIPLGLYIIRGDNIVIMGELDQEKEASQVNLIKKSPEEVLAAEADQHEEGVVTVRGTWNFD 118
BLAST of NO03G04180 vs. NCBI_GenBank
Match: GAX94700.1 (Hypothetical protein PINS_002592 [Pythium insidiosum]) HSP 1 Score: 117.9 bits (294), Expect = 6.000e-23 Identity = 54/114 (47.37%), Postives = 83/114 (72.81%), Query Frame = 0 Query: 214 YLPGAASLFEQLDKQIMVVLRDGRNLVGILRSFDQYSNMVLEDTYERHVVDDKYGDLPLGLYLVRGDSMVMLGEVDPARESEALVKVTADEIIELLQESVEAGA---KLEWDFE 325 +LPG SL +QLDK+I+VVLRDGR+LVG++RSFDQYSN++L+DTYERHV + D+ LGL ++RG+++V+LG+ + R+ + + T DE+ E + GA + +W+F+ Sbjct: 4 FLPGNISLIDQLDKRILVVLRDGRHLVGVVRSFDQYSNIILQDTYERHVAGGLFCDIELGLNIIRGENIVLLGDEEKERDXXHMKRATMDEVCEAEERLNAEGATSVRTQWEFD 117
BLAST of NO03G04180 vs. NCBI_GenBank
Match: XP_003144370.1 (U6 snRNA-associated Sm-family protein LSm [Loa loa] >EFO19702.1 U6 snRNA-associated Sm-family protein LSm [Loa loa]) HSP 1 Score: 117.5 bits (293), Expect = 7.900e-23 Identity = 57/112 (50.89%), Postives = 83/112 (74.11%), Query Frame = 0 Query: 211 LPD-YLPGAASLFEQLDKQIMVVLRDGRNLVGILRSFDQYSNMVLEDTYERHVVDDKYGDLPLGLYLVRGDSMVMLGEVDPARE-SEALVKVTADEIIELLQESVEAGAKLE 321 LPD YLPGA SL EQLDK+++VVLRDGR L+G LR+ DQ++N+VL +T ER VD YGD+ G++L+RG+++V+ GE+D +E S L+ ++A EI+ L +E +E + E Sbjct: 3 LPDPYLPGALSLLEQLDKKLLVVLRDGRTLIGYLRTIDQFANLVLHETLERIHVDKYYGDIQRGVFLIRGENVVLAGEIDETKEQSSGLIPLSAKEILSLQREKIEEKERFE 114
BLAST of NO03G04180 vs. NCBI_GenBank
Match: XP_009024599.1 (hypothetical protein HELRODRAFT_102128 [Helobdella robusta] >ESN97443.1 hypothetical protein HELRODRAFT_102128 [Helobdella robusta]) HSP 1 Score: 115.5 bits (288), Expect = 3.000e-22 Identity = 55/99 (55.56%), Postives = 78/99 (78.79%), Query Frame = 0 Query: 214 YLPGAASLFEQLDKQIMVVLRDGRNLVGILRSFDQYSNMVLEDTYERHVVDDKYGDLPLGLYLVRGDSMVMLGEVDPARES-EALVKVTADEIIELLQE 312 +LPG ASL E++DK+++VVLRD R L+G LRS DQ++N+VL+ T ER V DK+GD+P G+++VRG+++V+LGE+DP ES L KV DEI+ +LQE Sbjct: 3 FLPGTASLIEEIDKKLLVVLRDSRTLIGYLRSIDQFANLVLQQTIERIYVGDKFGDIPRGIFIVRGENVVLLGEIDPELESMTKLTKVNIDEIL-MLQE 100
BLAST of NO03G04180 vs. NCBI_GenBank
Match: XP_015752092.1 (PREDICTED: U6 snRNA-associated Sm-like protein LSm1 isoform X2 [Acropora digitifera]) HSP 1 Score: 115.5 bits (288), Expect = 3.000e-22 Identity = 52/99 (52.53%), Postives = 80/99 (80.81%), Query Frame = 0 Query: 214 YLPGAASLFEQLDKQIMVVLRDGRNLVGILRSFDQYSNMVLEDTYERHVVDDKYGDLPLGLYLVRGDSMVMLGEVDPARESEALVK-VTADEIIELLQE 312 +LPG ASL +++DK++MVVLRDGR L+G LRS DQ++N++L+DT ER V +KYGD+P G++LVRG++MV++GE+D +E+ + +K V+ EI+E +E Sbjct: 3 FLPGTASLIKEIDKKLMVVLRDGRTLIGYLRSIDQFANLLLQDTIERIHVGEKYGDIPRGIFLVRGENMVLMGEIDEEKEANSKLKEVSVQEILEAQRE 101
BLAST of NO03G04180 vs. NCBI_GenBank
Match: ADD38614.1 (U6 snRNA-associated Sm-like protein LSm1 [Lepeophtheirus salmonis]) HSP 1 Score: 115.2 bits (287), Expect = 3.900e-22 Identity = 56/101 (55.45%), Postives = 78/101 (77.23%), Query Frame = 0 Query: 210 MLPDYLPGAASLFEQLDKQIMVVLRDGRNLVGILRSFDQYSNMVLEDTYERHVVDDKYGDLPLGLYLVRGDSMVMLGEVDPARESEA---LVKVTADEIIE 308 M YLPG AS+ E+LDK++MV+LRDGR L+GILRS DQY+N+VL ER V + YGD+P G+++VRG+++V+LGE+D RESEA L +V+ +EI+E Sbjct: 1 MSDHYLPGTASIMEELDKKLMVLLRDGRTLIGILRSVDQYANLVLHRAIERIHVGNDYGDIPRGIFVVRGENVVLLGEIDEVRESEANSKLREVSLEEILE 101 The following BLAST results are available for this feature:
BLAST of NO03G04180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G04180 ID=NO03G04180|Name=NO03G04180|organism=Nannochloropsis oceanica|type=gene|length=975bpback to top protein sequence of NO03G04180.1 >NO03G04180.1-protein ID=NO03G04180.1-protein|Name=NO03G04180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bpback to top Synonyms
Publications
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