NO03G04150, NO03G04150 (gene) Nannochloropsis oceanica

Overview
NameNO03G04150
Unique NameNO03G04150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1772
Alignment locationchr3:1202341..1204112 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1202341..1204112 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
GO:0016491oxidoreductase activity
Homology
[Close]
BLAST of NO03G04150 vs. NCBI_GenBank
Match: XP_005853669.1 (hypothetical protein NGA_0482400 [Nannochloropsis gaditana CCMP526] >EKU22693.1 hypothetical protein NGA_0482400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 73.9 bits (180), Expect = 7.400e-10
Identity = 57/203 (28.08%), Postives = 92/203 (45.32%), Query Frame = 0 
Query:   38 MASSASAFVPRVPLRWELQSTTD--------GQQ-----TEAAATTAGTDGKEEEDKDSLVGWQLAWEDVKTLPVEENSQTPLILRSTWDQSYLKDRFFILIRHK-GDVKLVDSSCGRCSFPLLNGPIVQEPRME-QEDNTSITCKVCGMRHSILTGKAVKPKSGGLDLGQSMGNFFFKKGEMKDIEVHPTKIMPDGKLYAKI 226
            + +S +AFVP  P      ST+         G++     T+A        G +    +SL G+    +    L   E SQ  +            D+F +LIR K G V  +D++CGRC FPLL G + ++P +E  ED   ITC +C +R S+ +G     ++   ++ Q +   FF K     ++ +      DG +YAK+
Sbjct:   15 VVASINAFVPSTPAPVPFPSTSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGESLRGFTKVLDVGSELADAEGSQKAV-------GPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKVSEDPSVEDDEDKGIITCPLCAVRFSLASGLVTGAQAD--NVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKL 208
[Close]
BLAST of NO03G04150 vs. NCBI_GenBank
Match: EWM24115.1 (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 73.9 bits (180), Expect = 7.400e-10
Identity = 57/203 (28.08%), Postives = 92/203 (45.32%), Query Frame = 0 
Query:   38 MASSASAFVPRVPLRWELQSTTD--------GQQ-----TEAAATTAGTDGKEEEDKDSLVGWQLAWEDVKTLPVEENSQTPLILRSTWDQSYLKDRFFILIRHK-GDVKLVDSSCGRCSFPLLNGPIVQEPRME-QEDNTSITCKVCGMRHSILTGKAVKPKSGGLDLGQSMGNFFFKKGEMKDIEVHPTKIMPDGKLYAKI 226
            + +S +AFVP  P      ST+         G++     T+A        G +    +SL G+    +    L   E SQ  +            D+F +LIR K G V  +D++CGRC FPLL G + ++P +E  ED   ITC +C +R S+ +G     ++   ++ Q +   FF K     ++ +      DG +YAK+
Sbjct:   42 VVASINAFVPSTPAPVPFPSTSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGESLRGFTKVLDVGSELADAEGSQKAV-------GPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKVSEDPSVEDDEDKGIITCPLCAVRFSLASGLVTGAQAD--NVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKL 235
The following BLAST results are available for this feature:
BLAST of NO03G04150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853669.17.400e-1028.08hypothetical protein NGA_0482400 [Nannochloropsis ... [more]
EWM24115.17.400e-1028.08expressed unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005465NSK005465Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04150.1NO03G04150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572874gene_1611Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04150.1NO03G04150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04150 ID=NO03G04150|Name=NO03G04150|organism=Nannochloropsis oceanica|type=gene|length=1772bp
CCCCGCTTCATATGGCTTTGTCAGCAAAGATCAGACGACAGCACACATCC
CTGCGCAGGCACCCACCCTTCTTTCCACCTCTTGTCCCCGAACTTTTTGT
TTTCCAGGTCTGTATTGCGTAGGCCTGATTATAAACTTGTGACTGCCTTC
CTGCCTCGATGATGAGGCTTGCCCACTCCCTGATCCAAAACACAGGCACC
CACCACATCCCATTATGCAGAACACTCCCCAGGCGCTGACTGGATCGTTT
ATGTTGTTCTTAATCGTCCGCAATGTGCCCGCTAGCTGGTATTGGCACCG
ACGCTACGCTCTACAACCTTTCCTGAAGATCGATGGCTGGGCGTAAAATC
TCCATGGCCCCCGGTTCGACCAATTTTTCGTGTGCTGCGCTGCCTTCTAA
CTTAACTCACGACGACGTCACACCCTATACTCCGACAGATCGATCATCCA
ATAATCATGTCTCGTATCCTTGTACTCGCCAGCGCGCTGTGCGCTACAGC
CTCTGCATTTATGCTCCCAACAGCGCCCTCCGCTGGCTTAGCGCCGGCAT
CCGCCATCACCAGCAGCATGGCCAGCAGTGCCTCTGCATTCGTACCGCGC
GTACCTCTGCGATGGGAGCTCCAGAGCACTACCGACGGCCAACAAACGGA
GGCCGCCGCGACGACGGCTGGCACAGACGGGAAGGAAGAGGAGGACAAAG
ACTCCTTGGTCGGGTGGCAGCTTGCGTGGGAGGACGTCAAAACCCTGCCT
GTGGAGGAAAACAGCCAGACACCCCTCATCCTGCGCTCGACTTGGGACCA
GTCTTACTTGAAGGACCGTTTCTTCATCCTCATCCGTCACAAGGGCGATG
TCAAGTTGGTTGACTCGTCTTGCGGTCGTTGTTCATTTCCCTTGTTGAAC
GGGCCGATTGTCCAGGAGCCGCGTATGGAGCAGGAGGATAACACGTCGAT
TACTTGCAAGGTGTGTGGGATGAGGCACTCCATCTTGACGGGTAAGGCCG
TGAAGCCTAAGAGCGGGGGGTTGGACCTGGGGCAGAGCATGGGGAATTTT
TTCTTCAAGAAGGGAGAGATGAAAGACATTGAAGTGCATCCGACTAAGAT
TATGCCGGATGGGAAGTTGTACGCGAAGATCTCACCGTTGAAGGTCAAGA
GGCCTTCCACTGATATGATTGTGCTTTAAATTTCTTGTGACACGGAAGGC
AGCAAGGAAGGCACAAATGACAAAAGGGCGATATAGAGAGGGATGCTGTG
TGTGTAAGGAGCAGTGCCGCTTGCGGTTTGACTGATTGATATGTGTGTGA
GCGTGTGTGTGTGTCCTTGTGTTTGGGGGGAAGGGGGGGAGGGGAGGAAT
GAGCCTTTGTTCGGTGCGTAAGTGGGGAATAAGCATGCATGCATTTGCGT
GTGCGTTTTCGAGCGGTGGCTGCAGCGGATGTTCACGTGTTTGTACATTA
CATTTCCTTTAATCATTGACCAGTTGTGTGGTAAGTAGGAAGCATGGGTA
GGTGGGGTAAAGGAGTTGAGCCTTAATCTGCTTTTAGAATAGAGCTCATG
GAAGGGTGAAAGTCAAACGAAAGGCAATAAAACATAGGCAGGGTTGATAG
CGGGGACAGAAGGGTCACCACCTTCGACTAGCTCGCGGCAAGCAATGTGG
AAGGCTTCTGGGAGACGACGACGAGGTGACGACCACCACCTGAAACCGCG
AGTGGAAGACGTTTTAAAAAGGCATAACCCACCACAACGAAAGAAGAATT
AATACATACACACACCTCACAT
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protein sequence of NO03G04150.1

>NO03G04150.1-protein ID=NO03G04150.1-protein|Name=NO03G04150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MSRILVLASALCATASAFMLPTAPSAGLAPASAITSSMASSASAFVPRVP
LRWELQSTTDGQQTEAAATTAGTDGKEEEDKDSLVGWQLAWEDVKTLPVE
ENSQTPLILRSTWDQSYLKDRFFILIRHKGDVKLVDSSCGRCSFPLLNGP
IVQEPRMEQEDNTSITCKVCGMRHSILTGKAVKPKSGGLDLGQSMGNFFF
KKGEMKDIEVHPTKIMPDGKLYAKISPLKVKRPSTDMIVL*
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Synonyms
Publications