NO03G04150.1, NO03G04150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04150.1
Unique NameNO03G04150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1772
Alignment locationchr3:1202341..1204112 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1202341..1204112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04150.1 vs.
Match: EWM24115.1 (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 73.9 bits (180), Expect = 7.400e-10
Identity = 57/203 (28.08%), Postives = 92/203 (45.32%), Query Frame = 0 
Query:   38 MASSASAFVPRVPLRWELQSTTD--------GQQ-----TEAAATTAGTDGKEEEDKDSLVGWQLAWEDVKTLPVEENSQTPLILRSTWDQSYLKDRFFILIRHK-GDVKLVDSSCGRCSFPLLNGPIVQEPRME-QEDNTSITCKVCGMRHSILTGKAVKPKSGGLDLGQSMGNFFFKKGEMKDIEVHPTKIMPDGKLYAKI 226
            + +S +AFVP  P      ST+         G++     T+A        G +    +SL G+    +    L   E SQ  +            D+F +LIR K G V  +D++CGRC FPLL G + ++P +E  ED   ITC +C +R S+ +G     ++   ++ Q +   FF K     ++ +      DG +YAK+
Sbjct:   42 VVASINAFVPSTPAPVPFPSTSSLTRNAQMLGRRHGRVLTQAKKRGGAASGPQSVTGESLRGFTKVLDVGSELADAEGSQKAV-------GPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKVSEDPSVEDDEDKGIITCPLCAVRFSLASGLVTGAQAD--NVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKL 235
The following BLAST results are available for this feature:
BLAST of NO03G04150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24115.17.400e-1028.08expressed unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04150NO03G04150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04150.1NO03G04150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04150.1.cds1NO03G04150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04150.1 ID=NO03G04150.1|Name=NO03G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp
CCCCGCTTCATATGGCTTTGTCAGCAAAGATCAGACGACAGCACACATCC
CTGCGCAGGCACCCACCCTTCTTTCCACCTCTTGTCCCCGAACTTTTTGT
TTTCCAGGTCTGTATTGCGTAGGCCTGATTATAAACTTGTGACTGCCTTC
CTGCCTCGATGATGAGGCTTGCCCACTCCCTGATCCAAAACACAGGCACC
CACCACATCCCATTATGCAGAACACTCCCCAGGCGCTGACTGGATCGTTT
ATGTTGTTCTTAATCGTCCGCAATGTGCCCGCTAGCTGGTATTGGCACCG
ACGCTACGCTCTACAACCTTTCCTGAAGATCGATGGCTGGGCGTAAAATC
TCCATGGCCCCCGGTTCGACCAATTTTTCGTGTGCTGCGCTGCCTTCTAA
CTTAACTCACGACGACGTCACACCCTATACTCCGACAGATCGATCATCCA
ATAATCATGTCTCGTATCCTTGTACTCGCCAGCGCGCTGTGCGCTACAGC
CTCTGCATTTATGCTCCCAACAGCGCCCTCCGCTGGCTTAGCGCCGGCAT
CCGCCATCACCAGCAGCATGGCCAGCAGTGCCTCTGCATTCGTACCGCGC
GTACCTCTGCGATGGGAGCTCCAGAGCACTACCGACGGCCAACAAACGGA
GGCCGCCGCGACGACGGCTGGCACAGACGGGAAGGAAGAGGAGGACAAAG
ACTCCTTGGTCGGGTGGCAGCTTGCGTGGGAGGACGTCAAAACCCTGCCT
GTGGAGGAAAACAGCCAGACACCCCTCATCCTGCGCTCGACTTGGGACCA
GTCTTACTTGAAGGACCGTTTCTTCATCCTCATCCGTCACAAGGGCGATG
TCAAGTTGGTTGACTCGTCTTGCGGTCGTTGTTCATTTCCCTTGTTGAAC
GGGCCGATTGTCCAGGAGCCGCGTATGGAGCAGGAGGATAACACGTCGAT
TACTTGCAAGGTGTGTGGGATGAGGCACTCCATCTTGACGGGTAAGGCCG
TGAAGCCTAAGAGCGGGGGGTTGGACCTGGGGCAGAGCATGGGGAATTTT
TTCTTCAAGAAGGGAGAGATGAAAGACATTGAAGTGCATCCGACTAAGAT
TATGCCGGATGGGAAGTTGTACGCGAAGATCTCACCGTTGAAGGTCAAGA
GGCCTTCCACTGATATGATTGTGCTTTAAATTTCTTGTGACACGGAAGGC
AGCAAGGAAGGCACAAATGACAAAAGGGCGATATAGAGAGGGATGCTGTG
TGTGTAAGGAGCAGTGCCGCTTGCGGTTTGACTGATTGATATGTGTGTGA
GCGTGTGTGTGTGTCCTTGTGTTTGGGGGGAAGGGGGGGAGGGGAGGAAT
GAGCCTTTGTTCGGTGCGTAAGTGGGGAATAAGCATGCATGCATTTGCGT
GTGCGTTTTCGAGCGGTGGCTGCAGCGGATGTTCACGTGTTTGTACATTA
CATTTCCTTTAATCATTGACCAGTTGTGTGGTAAGTAGGAAGCATGGGTA
GGTGGGGTAAAGGAGTTGAGCCTTAATCTGCTTTTAGAATAGAGCTCATG
GAAGGGTGAAAGTCAAACGAAAGGCAATAAAACATAGGCAGGGTTGATAG
CGGGGACAGAAGGGTCACCACCTTCGACTAGCTCGCGGCAAGCAATGTGG
AAGGCTTCTGGGAGACGACGACGAGGTGACGACCACCACCTGAAACCGCG
AGTGGAAGACGTTTTAAAAAGGCATAACCCACCACAACGAAAGAAGAATT
AATACATACACACACCTCACAT
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protein sequence of NO03G04150.1

>NO03G04150.1-protein ID=NO03G04150.1-protein|Name=NO03G04150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MSRILVLASALCATASAFMLPTAPSAGLAPASAITSSMASSASAFVPRVP
LRWELQSTTDGQQTEAAATTAGTDGKEEEDKDSLVGWQLAWEDVKTLPVE
ENSQTPLILRSTWDQSYLKDRFFILIRHKGDVKLVDSSCGRCSFPLLNGP
IVQEPRMEQEDNTSITCKVCGMRHSILTGKAVKPKSGGLDLGQSMGNFFF
KKGEMKDIEVHPTKIMPDGKLYAKISPLKVKRPSTDMIVL*
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mRNA from alignment at chr3:1202341..1204112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04150.1 ID=NO03G04150.1|Name=NO03G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp|location=Sequence derived from alignment at chr3:1202341..1204112- (Nannochloropsis oceanica)
CCCCGCTTCATATGGCTTTGTCAGCAAAGATCAGACGACAGCACACATCC
CTGCGCAGGCACCCACCCTTCTTTCCACCTCTTGTCCCCGAACTTTTTGT
TTTCCAGGTCTGTATTGCGTAGGCCTGATTATAAACTTGTGACTGCCTTC
CTGCCTCGATGATGAGGCTTGCCCACTCCCTGATCCAAAACACAGGCACC
CACCACATCCCATTATGCAGAACACTCCCCAGGCGCTGACTGGATCGTTT
ATGTTGTTCTTAATCGTCCGCAATGTGCCCGCTAGCTGGTATTGGCACCG
ACGCTACGCTCTACAACCTTTCCTGAAGATCGATGGCTGGGCGTAAAATC
TCCATGGCCCCCGGTTCGACCAATTTTTCGTGTGCTGCGCTGCCTTCTAA
CTTAACTCACGACGACGTCACACCCTATACTCCGACAGATCGATCATCCA
ATAATCATGTCTCGTATCCTTGTACTCGCCAGCGCGCTGTGCGCTACAGC
CTCTGCATTTATGCTCCCAACAGCGCCCTCCGCTGGCTTAGCGCCGGCAT
CCGCCATCACCAGCAGCATGGCCAGCAGTGCCTCTGCATTCGTACCGCGC
GTACCTCTGCGATGGGAGCTCCAGAGCACTACCGACGGCCAACAAACGGA
GGCCGCCGCGACGACGGCTGGCACAGACGGGAAGGAAGAGGAGGACAAAG
ACTCCTTGGTCGGGTGGCAGCTTGCGTGGGAGGACGTCAAAACCCTGCCT
GTGGAGGAAAACAGCCAGACACCCCTCATCCTGCGCTCGACTTGGGACCA
GTCTTACTTGAAGGACCGTTTCTTCATCCTCATCCGTCACAAGGGCGATG
TCAAGTTGGTTGACTCGTCTTGCGGTCGTTGTTCATTTCCCTTGTTGAAC
GGGCCGATTGTCCAGGAGCCGCGTATGGAGCAGGAGGATAACACGTCGAT
TACTTGCAAGGTGTGTGGGATGAGGCACTCCATCTTGACGGGTAAGGCCG
TGAAGCCTAAGAGCGGGGGGTTGGACCTGGGGCAGAGCATGGGGAATTTT
TTCTTCAAGAAGGGAGAGATGAAAGACATTGAAGTGCATCCGACTAAGAT
TATGCCGGATGGGAAGTTGTACGCGAAGATCTCACCGTTGAAGGTCAAGA
GGCCTTCCACTGATATGATTGTGCTTTAAATTTCTTGTGACACGGAAGGC
AGCAAGGAAGGCACAAATGACAAAAGGGCGATATAGAGAGGGATGCTGTG
TGTGTAAGGAGCAGTGCCGCTTGCGGTTTGACTGATTGATATGTGTGTGA
GCGTGTGTGTGTGTCCTTGTGTTTGGGGGGAAGGGGGGGAGGGGAGGAAT
GAGCCTTTGTTCGGTGCGTAAGTGGGGAATAAGCATGCATGCATTTGCGT
GTGCGTTTTCGAGCGGTGGCTGCAGCGGATGTTCACGTGTTTGTACATTA
CATTTCCTTTAATCATTGACCAGTTGTGTGGTAAGTAGGAAGCATGGGTA
GGTGGGGTAAAGGAGTTGAGCCTTAATCTGCTTTTAGAATAGAGCTCATG
GAAGGGTGAAAGTCAAACGAAAGGCAATAAAACATAGGCAGGGTTGATAG
CGGGGACAGAAGGGTCACCACCTTCGACTAGCTCGCGGCAAGCAATGTGG
AAGGCTTCTGGGAGACGACGACGAGGTGACGACCACCACCTGAAACCGCG
AGTGGAAGACGTTTTAAAAAGGCATAACCCACCACAACGAAAGAAGAATT
AATACATACACACACCTCACAT
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Coding sequence (CDS) from alignment at chr3:1202341..1204112-

>NO03G04150.1 ID=NO03G04150.1|Name=NO03G04150.1|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at chr3:1202341..1204112- (Nannochloropsis oceanica)
ATGTCTCGTATCCTTGTACTCGCCAGCGCGCTGTGCGCTACAGCCTCTGC
ATTTATGCTCCCAACAGCGCCCTCCGCTGGCTTAGCGCCGGCATCCGCCA
TCACCAGCAGCATGGCCAGCAGTGCCTCTGCATTCGTACCGCGCGTACCT
CTGCGATGGGAGCTCCAGAGCACTACCGACGGCCAACAAACGGAGGCCGC
CGCGACGACGGCTGGCACAGACGGGAAGGAAGAGGAGGACAAAGACTCCT
TGGTCGGGTGGCAGCTTGCGTGGGAGGACGTCAAAACCCTGCCTGTGGAG
GAAAACAGCCAGACACCCCTCATCCTGCGCTCGACTTGGGACCAGTCTTA
CTTGAAGGACCGTTTCTTCATCCTCATCCGTCACAAGGGCGATGTCAAGT
TGGTTGACTCGTCTTGCGGTCGTTGTTCATTTCCCTTGTTGAACGGGCCG
ATTGTCCAGGAGCCGCGTATGGAGCAGGAGGATAACACGTCGATTACTTG
CAAGGTGTGTGGGATGAGGCACTCCATCTTGACGGGTAAGGCCGTGAAGC
CTAAGAGCGGGGGGTTGGACCTGGGGCAGAGCATGGGGAATTTTTTCTTC
AAGAAGGGAGAGATGAAAGACATTGAAGTGCATCCGACTAAGATTATGCC
GGATGGGAAGTTGTACGCGAAGATCTCACCGTTGAAGGTCAAGAGGCCTT
CCACTGATATGATTGTGCTTTAA
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Synonyms
Publications