NO03G04080, NO03G04080 (gene) Nannochloropsis oceanica

Overview
NameNO03G04080
Unique NameNO03G04080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length689
Alignment locationchr3:1185862..1186550 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1185862..1186550 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G04080 vs. NCBI_GenBank
Match: XP_005853434.1 (hypothetical protein NGA_0002802, partial [Nannochloropsis gaditana CCMP526] >EKU22925.1 hypothetical protein NGA_0002802, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 95.1 bits (235), Expect = 1.900e-16
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 0 
Query:   46 RRQKELHGH-RQVSELQEYAAQSGHIDPHIANGHVADNGGMVAPMYNSLGPSHVAAMGGSFDALANPEGYGGVGPGS 122
            R  +E +GH R + E+ EYA + G +DPH+A GH  DNG +V P+Y SLGPS VA MGG+FD LANPEGY GVGPG+
Sbjct:    5 RVPQEQNGHIRNLQEVFEYAVERGRLDPHVAQGHAFDNGNLVLPVYQSLGPSQVAVMGGAFDLLANPEGYAGVGPGA 81
The following BLAST results are available for this feature:
BLAST of NO03G04080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853434.11.900e-1659.74hypothetical protein NGA_0002802, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04080.1NO03G04080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626921gene_1604Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04080.1NO03G04080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04080 ID=NO03G04080|Name=NO03G04080|organism=Nannochloropsis oceanica|type=gene|length=689bp
TGAACTTCCTTCCCCTTCATTTATCCATGTATTTCCCAAGCGGTCAGTTC
AAGTGAACTGTCCTCGCGACGACAAAAGTACCGCAAGCCGAGAACTGACT
GCTGATACTATCACTGCTACTGCTCTCCTTCATGTCGTCGAATAAGCTCT
TCTGCTTTGCCAGCTTGGTGCCTTTCGTAGCTGTGGTCCTGCTGCTTCTG
AGCCTAACCAAAGCCACAACCGCCAAAAGCTTCCGAGGGCCATCTGATGA
AGTGCAACAGCCACCGCGACGGCAAAAGGAACTTCACGGCCACCGACAGG
TGTCAGAGCTACAAGAATATGCCGCGCAAAGCGGTCATATAGACCCGCAC
ATCGCAAATGGACACGTAGCCGACAATGGAGGCATGGTTGCGCCCATGTA
CAACTCGCTGGGGCCCTCGCATGTCGgtacgtgtgagtatttgttgacat
ataaaagtacctgacagagacacgactagaaaaggtaagaaggattctca
cctggtttccttctccttcacaatacaagCCGCCATGGGTGGGTCTTTTG
ATGCCTTGGCGAATCCTGAAGGGTATGGTGGCGTAGGCCCTGGCTCTCTT
ACCATGGGCATCGTAGTCAAAAATAAAGTGGTGGAGAGAGTGCCTGGTGG
CGATCAAGATGGAAACCGCGGAAAGTAATAGCAAGAAAT
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protein sequence of NO03G04080.1

>NO03G04080.1-protein ID=NO03G04080.1-protein|Name=NO03G04080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MSSNKLFCFASLVPFVAVVLLLLSLTKATTAKSFRGPSDEVQQPPRRQKE
LHGHRQVSELQEYAAQSGHIDPHIANGHVADNGGMVAPMYNSLGPSHVAA
MGGSFDALANPEGYGGVGPGSLTMGIVVKNKVVERVPGGDQDGNRGK*
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Synonyms
Publications