NO03G04080.1, NO03G04080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04080.1
Unique NameNO03G04080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length586
Alignment locationchr3:1185862..1186550 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1185862..1186550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04080.1 vs.
Match: XP_005853434.1 (hypothetical protein NGA_0002802, partial [Nannochloropsis gaditana CCMP526]; EKU22925.1 hypothetical protein NGA_0002802, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 95.1 bits (235), Expect = 1.900e-16
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 0 
Query:   46 RRQKELHGH-RQVSELQEYAAQSGHIDPHIANGHVADNGGMVAPMYNSLGPSHVAAMGGSFDALANPEGYGGVGPGS 122
            R  +E +GH R + E+ EYA + G +DPH+A GH  DNG +V P+Y SLGPS VA MGG+FD LANPEGY GVGPG+
Sbjct:    5 RVPQEQNGHIRNLQEVFEYAVERGRLDPHVAQGHAFDNGNLVLPVYQSLGPSQVAVMGGAFDLLANPEGYAGVGPGA 81
The following BLAST results are available for this feature:
BLAST of NO03G04080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853434.11.900e-1659.74hypothetical protein NGA_0002802, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04080NO03G04080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04080.1NO03G04080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04080.1.cds1NO03G04080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04080.1.cds2NO03G04080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04080.1 ID=NO03G04080.1|Name=NO03G04080.1|organism=Nannochloropsis oceanica|type=mRNA|length=586bp
TGAACTTCCTTCCCCTTCATTTATCCATGTATTTCCCAAGCGGTCAGTTC
AAGTGAACTGTCCTCGCGACGACAAAAGTACCGCAAGCCGAGAACTGACT
GCTGATACTATCACTGCTACTGCTCTCCTTCATGTCGTCGAATAAGCTCT
TCTGCTTTGCCAGCTTGGTGCCTTTCGTAGCTGTGGTCCTGCTGCTTCTG
AGCCTAACCAAAGCCACAACCGCCAAAAGCTTCCGAGGGCCATCTGATGA
AGTGCAACAGCCACCGCGACGGCAAAAGGAACTTCACGGCCACCGACAGG
TGTCAGAGCTACAAGAATATGCCGCGCAAAGCGGTCATATAGACCCGCAC
ATCGCAAATGGACACGTAGCCGACAATGGAGGCATGGTTGCGCCCATGTA
CAACTCGCTGGGGCCCTCGCATGTCGCCGCCATGGGTGGGTCTTTTGATG
CCTTGGCGAATCCTGAAGGGTATGGTGGCGTAGGCCCTGGCTCTCTTACC
ATGGGCATCGTAGTCAAAAATAAAGTGGTGGAGAGAGTGCCTGGTGGCGA
TCAAGATGGAAACCGCGGAAAGTAATAGCAAGAAAT
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protein sequence of NO03G04080.1

>NO03G04080.1-protein ID=NO03G04080.1-protein|Name=NO03G04080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MSSNKLFCFASLVPFVAVVLLLLSLTKATTAKSFRGPSDEVQQPPRRQKE
LHGHRQVSELQEYAAQSGHIDPHIANGHVADNGGMVAPMYNSLGPSHVAA
MGGSFDALANPEGYGGVGPGSLTMGIVVKNKVVERVPGGDQDGNRGK*
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mRNA from alignment at chr3:1185862..1186550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04080.1 ID=NO03G04080.1|Name=NO03G04080.1|organism=Nannochloropsis oceanica|type=mRNA|length=689bp|location=Sequence derived from alignment at chr3:1185862..1186550- (Nannochloropsis oceanica)
TGAACTTCCTTCCCCTTCATTTATCCATGTATTTCCCAAGCGGTCAGTTC
AAGTGAACTGTCCTCGCGACGACAAAAGTACCGCAAGCCGAGAACTGACT
GCTGATACTATCACTGCTACTGCTCTCCTTCATGTCGTCGAATAAGCTCT
TCTGCTTTGCCAGCTTGGTGCCTTTCGTAGCTGTGGTCCTGCTGCTTCTG
AGCCTAACCAAAGCCACAACCGCCAAAAGCTTCCGAGGGCCATCTGATGA
AGTGCAACAGCCACCGCGACGGCAAAAGGAACTTCACGGCCACCGACAGG
TGTCAGAGCTACAAGAATATGCCGCGCAAAGCGGTCATATAGACCCGCAC
ATCGCAAATGGACACGTAGCCGACAATGGAGGCATGGTTGCGCCCATGTA
CAACTCGCTGGGGCCCTCGCATGTCGGTACGTGTGAGTATTTGTTGACAT
ATAAAAGTACCTGACAGAGACACGACTAGAAAAGGTAAGAAGGATTCTCA
CCTGGTTTCCTTCTCCTTCACAATACAAGCCGCCATGGGTGGGTCTTTTG
ATGCCTTGGCGAATCCTGAAGGGTATGGTGGCGTAGGCCCTGGCTCTCTT
ACCATGGGCATCGTAGTCAAAAATAAAGTGGTGGAGAGAGTGCCTGGTGG
CGATCAAGATGGAAACCGCGGAAAGTAATAGCAAGAAAT
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Coding sequence (CDS) from alignment at chr3:1185862..1186550-

>NO03G04080.1 ID=NO03G04080.1|Name=NO03G04080.1|organism=Nannochloropsis oceanica|type=CDS|length=444bp|location=Sequence derived from alignment at chr3:1185862..1186550- (Nannochloropsis oceanica)
ATGTCGTCGAATAAGCTCTTCTGCTTTGCCAGCTTGGTGCCTTTCGTAGC
TGTGGTCCTGCTGCTTCTGAGCCTAACCAAAGCCACAACCGCCAAAAGCT
TCCGAGGGCCATCTGATGAAGTGCAACAGCCACCGCGACGGCAAAAGGAA
CTTCACGGCCACCGACAGGTGTCAGAGCTACAAGAATATGCCGCGCAAAG
CGGTCATATAGACCCGCACATCGCAAATGGACACGTAGCCGACAATGGAG
GCATGGTTGCGCCCATGTACAACTCGCTGGGGCCCTCGCATGTCGCCGCC
ATGGGTGGGTCTTTTGATGCCTTGGCGAATCCTGAAGGGTATGGTGGCGT
AGGCCCTGGCTCTCTTACCATGGGCATCGTAGTCAAAAATAAAGTGGTGG
AGAGAGTGCCTGGTGGCGATCAAGATGGAAACCGCGGAAAGTAA
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Synonyms
Publications