NO03G03080, NO03G03080 (gene) Nannochloropsis oceanica

Overview
NameNO03G03080
Unique NameNO03G03080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1121
Alignment locationchr3:922719..923839 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:922719..923839 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO03G03080 vs. NCBI_GenBank
Match: EWM29776.1 (hypothetical protein Naga_100022g38 [Nannochloropsis gaditana])

HSP 1 Score: 133.3 bits (334), Expect = 4.500e-28
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 0 
Query:   35 LGISGAALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDFDFKSGEWHGKRNNPNSR 105
            LGI+ AALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPD+DF+SGEWHG+RN+P  +
Sbjct:   35 LGITMAALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRRNDPTKK 104
The following BLAST results are available for this feature:
BLAST of NO03G03080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29776.14.500e-2887.14hypothetical protein Naga_100022g38 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005586NSK005586Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03080.1NO03G03080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100022g38gene888Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03080.1NO03G03080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03080 ID=NO03G03080|Name=NO03G03080|organism=Nannochloropsis oceanica|type=gene|length=1121bp
CCACAGGCTACCACTTTGCCACCGCTCTGTCGGGGAGGGCAAGTCCAAGC
CCGCCACGTACGAGCGACAGCCTGCTCCCATCGATCATTTGCATGGGCAA
GGGCAAAGGCAAGAAGACATTCGCCGCCACCACTGCTACCCCAAGCATAT
CCAAGCCAAAGACCAAGGGATTCTCGACGGCAGAAAGGCTGCAAGGCGTC
TTAAGTGGTTCAGTGAGCAGCCGCGGGTCTCTGACAGGCAAAGGCACAGG
CTCCTTTGGCGCCTCGCTCTCCAAGTCCAAGCAACGCTGAGCTGTCAAAC
GGCACGCAACCAACGTGGTGACGGGAGTGATGATGATGATGATGATGATG
ATGGCTGCCGCCGCTTCTGGCAAAGAAGCAGCGTCAGCGTCTATTCGTAA
TCGGAAGCGCCTCACGTTGATGGTGATGATGCTGGGCATCTCCGGAGgtg
gggagggagggaggaaaaggagggatggattgctgaggcattcgtaggta
aaatcgacatatatcaagacgctcatctctaaacttctgaattcatagag
actcacttgcctttgctttaatgcccatccccaaaatctctcacagCGGC
TCTCTTGCCCTACGGCATCCGCAAGCTCCGCGACGGCCGCTCGTTGTACC
AGAGCGACAAGCCCTTGACTGGAAGTCAGATCATGCGCGGCGCGTACATG
AACTCGTCCAGCCAGGATATCGGCCCAGATCCTGACTTTGACTTTAAAAG
TGGCGAGTGGCATGGTAAGCGGAATAACCCGAATAGCAGGGCGTAAATGG
GAGGGTGTGCGTGTGGTCCTTAAGGTACGGGGGAGACCAGTCAAGTTAGG
CAGAGGGCATGACGTTGTTTTTTGCATGACATCGGTGTTTGTCACATGAC
GATTCAATGATGTACCGGTAAAAGAAATCCGGGTTGGGTATGCAGGAGGG
GCTTCCCCCGTAAGAGGGGAGGGTGTGGATGAAGGTTGAAGGCATTCTAT
CGCCTCAATCGCAACGCCACAATGTTTAAAATGAAAGGAGACGTGTTAAA
ATAGAAAGTTAAGCCCAAAAGAGATACATGAGAAGAAAAAAAGCAAAAAT
GCATATCTGGCAGTGTCTGAC
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protein sequence of NO03G03080.1

>NO03G03080.1-protein ID=NO03G03080.1-protein|Name=NO03G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MMMMMMMMAAAASGKEAASASIRNRKRLTLMVMMLGISGAALLPYGIRKL
RDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDFDFKSGEWHGKRNN
PNSRA*
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Synonyms
Publications