NO03G03080.1, NO03G03080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03080.1
Unique NameNO03G03080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length972
Alignment locationchr3:922719..923839 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:922719..923839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03080.1 vs.
Match: EWM29776.1 (hypothetical protein Naga_100022g38 [Nannochloropsis gaditana])

HSP 1 Score: 163.7 bits (413), Expect = 3.100e-37
Identity = 80/104 (76.92%), Postives = 94/104 (90.38%), Query Frame = 0 
Query:    1 MMMMMMMMAAAASGKEAASASIRNRKRLTLMVMMLGISGAALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDFDFKSGEWHGKRNNPNSR 105
            MMMMMMM+AA  +GK AA+ S RNR R+T++++ LGI+ AALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPD+DF+SGEWHG+RN+P  +
Sbjct:    1 MMMMMMMVAAPGAGKNAATLSTRNRNRITVVLVTLGITMAALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRRNDPTKK 104
The following BLAST results are available for this feature:
BLAST of NO03G03080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29776.13.100e-3776.92hypothetical protein Naga_100022g38 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03080NO03G03080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03080.1NO03G03080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03080.1.cds1NO03G03080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03080.1.cds2NO03G03080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03080.1 ID=NO03G03080.1|Name=NO03G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=972bp
CCACAGGCTACCACTTTGCCACCGCTCTGTCGGGGAGGGCAAGTCCAAGC
CCGCCACGTACGAGCGACAGCCTGCTCCCATCGATCATTTGCATGGGCAA
GGGCAAAGGCAAGAAGACATTCGCCGCCACCACTGCTACCCCAAGCATAT
CCAAGCCAAAGACCAAGGGATTCTCGACGGCAGAAAGGCTGCAAGGCGTC
TTAAGTGGTTCAGTGAGCAGCCGCGGGTCTCTGACAGGCAAAGGCACAGG
CTCCTTTGGCGCCTCGCTCTCCAAGTCCAAGCAACGCTGAGCTGTCAAAC
GGCACGCAACCAACGTGGTGACGGGAGTGATGATGATGATGATGATGATG
ATGGCTGCCGCCGCTTCTGGCAAAGAAGCAGCGTCAGCGTCTATTCGTAA
TCGGAAGCGCCTCACGTTGATGGTGATGATGCTGGGCATCTCCGGAGCGG
CTCTCTTGCCCTACGGCATCCGCAAGCTCCGCGACGGCCGCTCGTTGTAC
CAGAGCGACAAGCCCTTGACTGGAAGTCAGATCATGCGCGGCGCGTACAT
GAACTCGTCCAGCCAGGATATCGGCCCAGATCCTGACTTTGACTTTAAAA
GTGGCGAGTGGCATGGTAAGCGGAATAACCCGAATAGCAGGGCGTAAATG
GGAGGGTGTGCGTGTGGTCCTTAAGGTACGGGGGAGACCAGTCAAGTTAG
GCAGAGGGCATGACGTTGTTTTTTGCATGACATCGGTGTTTGTCACATGA
CGATTCAATGATGTACCGGTAAAAGAAATCCGGGTTGGGTATGCAGGAGG
GGCTTCCCCCGTAAGAGGGGAGGGTGTGGATGAAGGTTGAAGGCATTCTA
TCGCCTCAATCGCAACGCCACAATGTTTAAAATGAAAGGAGACGTGTTAA
AATAGAAAGTTAAGCCCAAAAGAGATACATGAGAAGAAAAAAAGCAAAAA
TGCATATCTGGCAGTGTCTGAC
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protein sequence of NO03G03080.1

>NO03G03080.1-protein ID=NO03G03080.1-protein|Name=NO03G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MMMMMMMMAAAASGKEAASASIRNRKRLTLMVMMLGISGAALLPYGIRKL
RDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDFDFKSGEWHGKRNN
PNSRA*
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mRNA from alignment at chr3:922719..923839+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03080.1 ID=NO03G03080.1|Name=NO03G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1121bp|location=Sequence derived from alignment at chr3:922719..923839+ (Nannochloropsis oceanica)
CCACAGGCTACCACTTTGCCACCGCTCTGTCGGGGAGGGCAAGTCCAAGC
CCGCCACGTACGAGCGACAGCCTGCTCCCATCGATCATTTGCATGGGCAA
GGGCAAAGGCAAGAAGACATTCGCCGCCACCACTGCTACCCCAAGCATAT
CCAAGCCAAAGACCAAGGGATTCTCGACGGCAGAAAGGCTGCAAGGCGTC
TTAAGTGGTTCAGTGAGCAGCCGCGGGTCTCTGACAGGCAAAGGCACAGG
CTCCTTTGGCGCCTCGCTCTCCAAGTCCAAGCAACGCTGAGCTGTCAAAC
GGCACGCAACCAACGTGGTGACGGGAGTGATGATGATGATGATGATGATG
ATGGCTGCCGCCGCTTCTGGCAAAGAAGCAGCGTCAGCGTCTATTCGTAA
TCGGAAGCGCCTCACGTTGATGGTGATGATGCTGGGCATCTCCGGAGGTG
GGGAGGGAGGGAGGAAAAGGAGGGATGGATTGCTGAGGCATTCGTAGGTA
AAATCGACATATATCAAGACGCTCATCTCTAAACTTCTGAATTCATAGAG
ACTCACTTGCCTTTGCTTTAATGCCCATCCCCAAAATCTCTCACAGCGGC
TCTCTTGCCCTACGGCATCCGCAAGCTCCGCGACGGCCGCTCGTTGTACC
AGAGCGACAAGCCCTTGACTGGAAGTCAGATCATGCGCGGCGCGTACATG
AACTCGTCCAGCCAGGATATCGGCCCAGATCCTGACTTTGACTTTAAAAG
TGGCGAGTGGCATGGTAAGCGGAATAACCCGAATAGCAGGGCGTAAATGG
GAGGGTGTGCGTGTGGTCCTTAAGGTACGGGGGAGACCAGTCAAGTTAGG
CAGAGGGCATGACGTTGTTTTTTGCATGACATCGGTGTTTGTCACATGAC
GATTCAATGATGTACCGGTAAAAGAAATCCGGGTTGGGTATGCAGGAGGG
GCTTCCCCCGTAAGAGGGGAGGGTGTGGATGAAGGTTGAAGGCATTCTAT
CGCCTCAATCGCAACGCCACAATGTTTAAAATGAAAGGAGACGTGTTAAA
ATAGAAAGTTAAGCCCAAAAGAGATACATGAGAAGAAAAAAAGCAAAAAT
GCATATCTGGCAGTGTCTGAC
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Coding sequence (CDS) from alignment at chr3:922719..923839+

>NO03G03080.1 ID=NO03G03080.1|Name=NO03G03080.1|organism=Nannochloropsis oceanica|type=CDS|length=318bp|location=Sequence derived from alignment at chr3:922719..923839+ (Nannochloropsis oceanica)
ATGATGATGATGATGATGATGATGGCTGCCGCCGCTTCTGGCAAAGAAGC
AGCGTCAGCGTCTATTCGTAATCGGAAGCGCCTCACGTTGATGGTGATGA
TGCTGGGCATCTCCGGAGCGGCTCTCTTGCCCTACGGCATCCGCAAGCTC
CGCGACGGCCGCTCGTTGTACCAGAGCGACAAGCCCTTGACTGGAAGTCA
GATCATGCGCGGCGCGTACATGAACTCGTCCAGCCAGGATATCGGCCCAG
ATCCTGACTTTGACTTTAAAAGTGGCGAGTGGCATGGTAAGCGGAATAAC
CCGAATAGCAGGGCGTAA
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Synonyms
Publications