NO03G03050, NO03G03050 (gene) Nannochloropsis oceanica

Overview
NameNO03G03050
Unique NameNO03G03050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1134
Alignment locationchr3:914300..915433 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:914300..915433 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO03G03050 vs. NCBI_GenBank
Match: EWM29748.1 (hypothetical protein Naga_100022g42 [Nannochloropsis gaditana])

HSP 1 Score: 209.9 bits (533), Expect = 6.600e-51
Identity = 94/142 (66.20%), Postives = 116/142 (81.69%), Query Frame = 0 
Query:   41 KDYTQYWYTPVYTSLLGASIGTAAGAWRGHSTLLLALHLGIGYGVFGATFSSTLYGLHQLRGEEGTMNWVGAGAAAGAVTSLITAGPKQVVRGAIFFGGVGSVAESVCDIIGNSITEYKDKRARQRFGQPTTPPAWGGNKGL 183
            KDY  YWY PVYT L G+++G A GAWRG S LL +LHLGIGY +FGA+FSS+LYGL  +R EEG +NWVGAGA AGAVTSLITAGP+Q  RGA+FFGG+G +AES+ D++ +SI+ YKD+RA+QRFG PT P AWGG+K +
Sbjct:    9 KDYKHYWYAPVYTGLAGSAVGAAVGAWRGQSALLFSLHLGIGYTIFGASFSSSLYGLEYVRQEEGILNWVGAGAVAGAVTSLITAGPRQAGRGAVFFGGMGMIAESISDLVESSISNYKDRRAKQRFGHPTAPSAWGGDKAI 150
The following BLAST results are available for this feature:
BLAST of NO03G03050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29748.16.600e-5166.20hypothetical protein Naga_100022g42 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005591NSK005591Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03050.1NO03G03050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G03050.2NO03G03050.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100022g42gene891Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03050.1NO03G03050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G03050.2NO03G03050.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03050 ID=NO03G03050|Name=NO03G03050|organism=Nannochloropsis oceanica|type=gene|length=1134bp
CAGAGCCTTGCCCCAACCCACAAGACAAGCCACAATGACGGCCACCGTCA
ACGACTGTAGTCCGTCCTTGCAACGAAAACAACAACAACAGGCAGATGTC
CCATCTGGTTCGCCCTCGCTCCCGCCATTGTCGCCCACCACCCGCAGCGC
AGACAAGGACTACACACAGTATTGGTACACGCCCGTCTACACAAgtaagg
gtgtttggtgtttggctgcagcacttatccgcttgagtcttcgagaaaca
tccgatgcgaaagctctgtgactatttcatttgagggggcgcgcggattt
ttttatgacgcctcatcgcattcccactcgcatccattcttaccaaagGT
CTCCTCGGCGCGAGCATAGGGACGGCAGCGGGAGCGTGGCGCGGGCACTC
GACCTTACTGTTGGCGCTGCACTTGGGCATCGGGTATGGGGTCTTTGGGG
CCACTTTCAGTTgtaagttttctgctgagcgcggactgcgaatacctata
ggggcaggagtggcagattgcctcttctttctctctctctcatgattttt
ttcccctcgccattttcaacaaaacatagCGACCCTGTACGGCCTGCACC
AGCTGCGTGGTGAAGAAGGGACCATGAATTGGGTGGGGGCTGGGGCTGCG
GCTGGGGCTGTGACGTCCCTCATTACAGgtagaatgtctgggtgagaaag
gaggaagcgcatgaggacgcagcctgcagtccattctctgcgtttgtcgt
ttcaggcttgtgcttcatctgatggccgtccgtggttttgcgattttcaa
acgatgtgacgactttatttatcagattgtggattcataaaactcctgtc
tgttattcgcaatttgcttccatatcctcccgcacaaattgcacagCTGG
CCCGAAGCAAGTAGTCAGGGGCGCAATTTTTTTTGGCGGCGTGGGTTCGG
TGGCTGAGAGCGTGTGCGACATAATCGGAAACTCCATCACGGAATACAAG
GATAAACGAGCGAGGCAACGCTTTGGGCAGCCGACGACGCCACCTGCTTG
GGGAGGGAATAAGGGACTGGAATGAGTCGAAAAGATTAAAAGGAAAGGGA
AACTATGAACGAAAAGAATGTGGAAAAACTGCAG
back to top

protein sequence of NO03G03050.1

>NO03G03050.1-protein ID=NO03G03050.1-protein|Name=NO03G03050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MTATVNDCSPSLQRKQQQQADVPSGSPSLPPLSPTTRSADKDYTQYWYTP
VYTSLLGASIGTAAGAWRGHSTLLLALHLGIGYGVFGATFSSTLYGLHQL
RGEEGTMNWVGAGAAAGAVTSLITAGPKQVVRGAIFFGGVGSVAESVCDI
IGNSITEYKDKRARQRFGQPTTPPAWGGNKGLE*
back to top

protein sequence of NO03G03050.2

>NO03G03050.2-protein ID=NO03G03050.2-protein|Name=NO03G03050.2|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MTATVNDCSPSLQRKQQQQADVPSGSPSLPPLSPTTRSADKDYTQYWYTP
VYTSLLGASIGTAAGAWRGHSTLLLALHLGIGYGVFGATFSSTLYGLHQL
RGEEGTMNWVGAGAAAGAVTSLITGRMSG*
back to top
Synonyms
Publications