NO03G03050.1, NO03G03050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03050.1
Unique NameNO03G03050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length645
Alignment locationchr3:914300..915433 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:914300..915433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03050.1 vs.
Match: EWM29748.1 (hypothetical protein Naga_100022g42 [Nannochloropsis gaditana])

HSP 1 Score: 209.9 bits (533), Expect = 6.600e-51
Identity = 94/142 (66.20%), Postives = 116/142 (81.69%), Query Frame = 0 
Query:   41 KDYTQYWYTPVYTSLLGASIGTAAGAWRGHSTLLLALHLGIGYGVFGATFSSTLYGLHQLRGEEGTMNWVGAGAAAGAVTSLITAGPKQVVRGAIFFGGVGSVAESVCDIIGNSITEYKDKRARQRFGQPTTPPAWGGNKGL 183
            KDY  YWY PVYT L G+++G A GAWRG S LL +LHLGIGY +FGA+FSS+LYGL  +R EEG +NWVGAGA AGAVTSLITAGP+Q  RGA+FFGG+G +AES+ D++ +SI+ YKD+RA+QRFG PT P AWGG+K +
Sbjct:    9 KDYKHYWYAPVYTGLAGSAVGAAVGAWRGQSALLFSLHLGIGYTIFGASFSSSLYGLEYVRQEEGILNWVGAGAVAGAVTSLITAGPRQAGRGAVFFGGMGMIAESISDLVESSISNYKDRRAKQRFGHPTAPSAWGGDKAI 150
The following BLAST results are available for this feature:
BLAST of NO03G03050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29748.16.600e-5166.20hypothetical protein Naga_100022g42 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03050NO03G03050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03050.1NO03G03050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03050.1.cds1NO03G03050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03050.1.cds2NO03G03050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03050.1.cds3NO03G03050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03050.1.cds4NO03G03050.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03050.1 ID=NO03G03050.1|Name=NO03G03050.1|organism=Nannochloropsis oceanica|type=mRNA|length=645bp
CAGAGCCTTGCCCCAACCCACAAGACAAGCCACAATGACGGCCACCGTCA
ACGACTGTAGTCCGTCCTTGCAACGAAAACAACAACAACAGGCAGATGTC
CCATCTGGTTCGCCCTCGCTCCCGCCATTGTCGCCCACCACCCGCAGCGC
AGACAAGGACTACACACAGTATTGGTACACGCCCGTCTACACAAGTCTCC
TCGGCGCGAGCATAGGGACGGCAGCGGGAGCGTGGCGCGGGCACTCGACC
TTACTGTTGGCGCTGCACTTGGGCATCGGGTATGGGGTCTTTGGGGCCAC
TTTCAGTTCGACCCTGTACGGCCTGCACCAGCTGCGTGGTGAAGAAGGGA
CCATGAATTGGGTGGGGGCTGGGGCTGCGGCTGGGGCTGTGACGTCCCTC
ATTACAGCTGGCCCGAAGCAAGTAGTCAGGGGCGCAATTTTTTTTGGCGG
CGTGGGTTCGGTGGCTGAGAGCGTGTGCGACATAATCGGAAACTCCATCA
CGGAATACAAGGATAAACGAGCGAGGCAACGCTTTGGGCAGCCGACGACG
CCACCTGCTTGGGGAGGGAATAAGGGACTGGAATGAGTCGAAAAGATTAA
AAGGAAAGGGAAACTATGAACGAAAAGAATGTGGAAAAACTGCAG
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protein sequence of NO03G03050.1

>NO03G03050.1-protein ID=NO03G03050.1-protein|Name=NO03G03050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MTATVNDCSPSLQRKQQQQADVPSGSPSLPPLSPTTRSADKDYTQYWYTP
VYTSLLGASIGTAAGAWRGHSTLLLALHLGIGYGVFGATFSSTLYGLHQL
RGEEGTMNWVGAGAAAGAVTSLITAGPKQVVRGAIFFGGVGSVAESVCDI
IGNSITEYKDKRARQRFGQPTTPPAWGGNKGLE*
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mRNA from alignment at chr3:914300..915433+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03050.1 ID=NO03G03050.1|Name=NO03G03050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp|location=Sequence derived from alignment at chr3:914300..915433+ (Nannochloropsis oceanica)
CAGAGCCTTGCCCCAACCCACAAGACAAGCCACAATGACGGCCACCGTCA
ACGACTGTAGTCCGTCCTTGCAACGAAAACAACAACAACAGGCAGATGTC
CCATCTGGTTCGCCCTCGCTCCCGCCATTGTCGCCCACCACCCGCAGCGC
AGACAAGGACTACACACAGTATTGGTACACGCCCGTCTACACAAGTAAGG
GTGTTTGGTGTTTGGCTGCAGCACTTATCCGCTTGAGTCTTCGAGAAACA
TCCGATGCGAAAGCTCTGTGACTATTTCATTTGAGGGGGCGCGCGGATTT
TTTTATGACGCCTCATCGCATTCCCACTCGCATCCATTCTTACCAAAGGT
CTCCTCGGCGCGAGCATAGGGACGGCAGCGGGAGCGTGGCGCGGGCACTC
GACCTTACTGTTGGCGCTGCACTTGGGCATCGGGTATGGGGTCTTTGGGG
CCACTTTCAGTTGTAAGTTTTCTGCTGAGCGCGGACTGCGAATACCTATA
GGGGCAGGAGTGGCAGATTGCCTCTTCTTTCTCTCTCTCTCATGATTTTT
TTCCCCTCGCCATTTTCAACAAAACATAGCGACCCTGTACGGCCTGCACC
AGCTGCGTGGTGAAGAAGGGACCATGAATTGGGTGGGGGCTGGGGCTGCG
GCTGGGGCTGTGACGTCCCTCATTACAGGTAGAATGTCTGGGTGAGAAAG
GAGGAAGCGCATGAGGACGCAGCCTGCAGTCCATTCTCTGCGTTTGTCGT
TTCAGGCTTGTGCTTCATCTGATGGCCGTCCGTGGTTTTGCGATTTTCAA
ACGATGTGACGACTTTATTTATCAGATTGTGGATTCATAAAACTCCTGTC
TGTTATTCGCAATTTGCTTCCATATCCTCCCGCACAAATTGCACAGCTGG
CCCGAAGCAAGTAGTCAGGGGCGCAATTTTTTTTGGCGGCGTGGGTTCGG
TGGCTGAGAGCGTGTGCGACATAATCGGAAACTCCATCACGGAATACAAG
GATAAACGAGCGAGGCAACGCTTTGGGCAGCCGACGACGCCACCTGCTTG
GGGAGGGAATAAGGGACTGGAATGAGTCGAAAAGATTAAAAGGAAAGGGA
AACTATGAACGAAAAGAATGTGGAAAAACTGCAG
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Coding sequence (CDS) from alignment at chr3:914300..915433+

>NO03G03050.1 ID=NO03G03050.1|Name=NO03G03050.1|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at chr3:914300..915433+ (Nannochloropsis oceanica)
ATGACGGCCACCGTCAACGACTGTAGTCCGTCCTTGCAACGAAAACAACA
ACAACAGGCAGATGTCCCATCTGGTTCGCCCTCGCTCCCGCCATTGTCGC
CCACCACCCGCAGCGCAGACAAGGACTACACACAGTATTGGTACACGCCC
GTCTACACAAGTCTCCTCGGCGCGAGCATAGGGACGGCAGCGGGAGCGTG
GCGCGGGCACTCGACCTTACTGTTGGCGCTGCACTTGGGCATCGGGTATG
GGGTCTTTGGGGCCACTTTCAGTTCGACCCTGTACGGCCTGCACCAGCTG
CGTGGTGAAGAAGGGACCATGAATTGGGTGGGGGCTGGGGCTGCGGCTGG
GGCTGTGACGTCCCTCATTACAGCTGGCCCGAAGCAAGTAGTCAGGGGCG
CAATTTTTTTTGGCGGCGTGGGTTCGGTGGCTGAGAGCGTGTGCGACATA
ATCGGAAACTCCATCACGGAATACAAGGATAAACGAGCGAGGCAACGCTT
TGGGCAGCCGACGACGCCACCTGCTTGGGGAGGGAATAAGGGACTGGAAT
GA
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Synonyms
Publications