NO03G02880, NO03G02880 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G02880 vs. NCBI_GenBank
Match: EWM29779.1 (rab family gtpase [Nannochloropsis gaditana]) HSP 1 Score: 362.1 bits (928), Expect = 1.700e-96 Identity = 216/262 (82.44%), Postives = 229/262 (87.40%), Query Frame = 0 Query: 48 AGLSQKTLNIVNNLQPSSVHLKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA--EYTEFMSIRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADLADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQTXXXXXXXXXXXXXPLGNGSKKQCVI 308 AGLSQKTLNIVNNLQP+ + XXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ EYTEFMSIRILLLGDSGVGKTSLMMRYSE+EFAPCLLSTAGVDFKVRHL LEESK+KVKVQIWDTAGQERMHVITRTYYKGSHGIAL+YNL DPDSF+NVNYWMANIQQHAGDKVVK LIGNKADL DRAI YEQGAAMAKE+GF+HF+ETSAK+GANVH AFNALA+DIVRRIEEAQ LGN KKQCVI Sbjct: 41 AGLSQKTLNIVNNLQPAPATFSKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSVVEYTEFMSIRILLLGDSGVGKTSLMMRYSENEFAPCLLSTAGVDFKVRHLTLEESKRKVKVQIWDTAGQERMHVITRTYYKGSHGIALVYNLTDPDSFRNVNYWMANIQQHAGDKVVKTLIGNKADLTDRAISYEQGAAMAKEYGFMHFFETSAKSGANVHGAFNALALDIVRRIEEAQNESVVAAFGNGG---LGNNPKKQCVI 299
BLAST of NO03G02880 vs. NCBI_GenBank
Match: CBJ26357.1 (Rab8C, RAB family GTPase [Ectocarpus siliculosus]) HSP 1 Score: 215.7 bits (548), Expect = 2.000e-52 Identity = 109/167 (65.27%), Postives = 135/167 (80.84%), Query Frame = 0 Query: 110 SIRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHA--GDKVVKVLIGNKADLADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIV 275 +IRILLLGDSGVGKTSLM R+SED+FAP L+STAGVD+KV+ L+ + K+V+ QIWDTAGQER HVITRTYY+G+HGIAL Y++ D DSFKNVNYWMANIQ HA G ++ K+++GNK D+ DRAI + G +AKEFG V F+E SAK G V +AF +LA+DIV Sbjct: 137 TIRILLLGDSGVGKTSLMTRFSEDKFAPTLISTAGVDYKVQ--TLDINGKRVRCQIWDTAGQERFHVITRTYYRGAHGIALAYDVTDDDSFKNVNYWMANIQTHAEPGHRMQKMILGNKVDIEDRAISTKDGQDVAKEFG-VRFFEVSAKNGYGVSDAFYSLAVDIV 300
BLAST of NO03G02880 vs. NCBI_GenBank
Match: GBG34780.1 (Ras-related protein Rab-8A [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 213.0 bits (541), Expect = 1.300e-51 Identity = 105/173 (60.69%), Postives = 134/173 (77.46%), Query Frame = 0 Query: 111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHL--ALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADLADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQ 282 I+ILLLGDSGVGKTSLM+R+++++F P L+STAGVDFKVR+L ++ K++K QIWDTAGQER HVITRTYY+G+HGIAL+Y+ A+ SFK ++YWM NI+ HAG V VL GNK DL R I EQG A A+ FG FYETSAK+G NV EAF AL++D V R++ ++ Sbjct: 535 IKILLLGDSGVGKTSLMLRFADNQFQPNLMSTAGVDFKVRYLEDPVKTQNKRIKCQIWDTAGQERFHVITRTYYRGAHGIALVYDAANEQSFKQISYWMDNIRSHAGQDVCVVLFGNKVDLPSRVITPEQGRATAEAFG-AQFYETSAKSGVNVLEAFEALSIDAVGRMQASK 706
BLAST of NO03G02880 vs. NCBI_GenBank
Match: XP_013903992.1 (small rab-related GTPase [Monoraphidium neglectum] >KIZ04973.1 small rab-related GTPase [Monoraphidium neglectum]) HSP 1 Score: 194.1 bits (492), Expect = 6.300e-46 Identity = 89/173 (51.45%), Postives = 131/173 (75.72%), Query Frame = 0 Query: 111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADLAD--RAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQ 282 I++LL+GDSGVGK+ L++R+SE+ F P ++T G+DFK++ + L+ K VK+QIWDTAGQER IT YY+G+ GI L+Y++ D SF N+ WM NI+QHA D V K+L+GNK+D+AD RA+PY +G A+A E+G + F+ETSAK +NV EAF ++A D+++R+++ Q Sbjct: 13 IKLLLIGDSGVGKSCLLLRFSEESFTPSFITTIGIDFKIKKIFLD--NKWVKLQIWDTAGQERFRTITSAYYRGAMGILLVYDVTDEASFNNIRNWMRNIEQHASDTVNKILVGNKSDMADERRAVPYARGKALADEYG-IAFFETSAKDNSNVEEAFTSIARDVMQRLQQEQ 182
BLAST of NO03G02880 vs. NCBI_GenBank
Match: XP_006407626.1 (ras-related protein RABE1e isoform X2 [Eutrema salsugineum] >ESQ49079.1 hypothetical protein EUTSA_v10021492mg [Eutrema salsugineum]) HSP 1 Score: 188.7 bits (478), Expect = 2.600e-44 Identity = 89/174 (51.15%), Postives = 126/174 (72.41%), Query Frame = 0 Query: 111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADL--ADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQT 283 I++LL+GDSGVGK+ L++R+S+D F ++T G+DFK+R LE K++K+QIWDTAGQER IT YY+G+ GI L+Y++ D SF N+ WM NI+QHA D V K+L+GNKAD+ + RA+P +G A+A E+G + F+ETSAKT NV E F ++A DI +R+ E+ T Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIR--TLEIDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIEQHASDSVNKILVGNKADMDESKRAVPTSRGQALADEYG-IKFFETSAKTKLNVEEVFTSIAKDIKKRLTESDT 186
BLAST of NO03G02880 vs. NCBI_GenBank
Match: XP_005642967.1 (Rab8/RabE-family small GTPase [Coccomyxa subellipsoidea C-169] >EIE18423.1 Rab8/RabE-family small GTPase [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 188.0 bits (476), Expect = 4.500e-44 Identity = 86/174 (49.43%), Postives = 125/174 (71.84%), Query Frame = 0 Query: 111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADL--ADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQT 283 I++LL+GDSGVGK+ L++R+SED F ++T G+DFK++ + ++ K +K+QIWDTAGQER IT YY+G+ GI L+Y++ D SF N+ WM NI+QHA D V KVL+GNK D+ + R +PY QG A+A EFG + F+ETSAK+ V E F ++A D++ R+ ++QT Sbjct: 12 IKLLLIGDSGVGKSCLLLRFSEDSFTSSFITTIGIDFKIKKILID--NKWIKLQIWDTAGQERFRTITSAYYRGAMGILLVYDVTDESSFNNIRNWMRNIEQHASDNVNKVLVGNKCDMDESKRRVPYSQGQALADEFG-IQFFETSAKSNIKVDEVFQSIAKDVMLRLRDSQT 182
BLAST of NO03G02880 vs. NCBI_GenBank
Match: KFK38343.1 (hypothetical protein AALP_AA3G101800 [Arabis alpina]) HSP 1 Score: 187.6 bits (475), Expect = 5.900e-44 Identity = 88/174 (50.57%), Postives = 127/174 (72.99%), Query Frame = 0 Query: 111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADL--ADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQT 283 I++LL+GDSGVGK+ L++R+S+D F ++T G+DFK+R + L+ K++K+QIWDTAGQER IT YY+G+ GI L+Y++ D SF N+ WM NI+QHA D V K+L+GNKAD+ + RA+P +G A+A E+G + F+ETSAKT NV E F ++A DI +R+ E+ T Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNQNVEEVFLSIAKDIKQRLTESDT 186
BLAST of NO03G02880 vs. NCBI_GenBank
Match: XP_019187355.1 (PREDICTED: ras-related protein RABE1c-like [Ipomoea nil]) HSP 1 Score: 186.8 bits (473), Expect = 1.000e-43 Identity = 91/174 (52.30%), Postives = 127/174 (72.99%), Query Frame = 0 Query: 111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADL--ADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQT 283 I++LL+GDSGVGK+ L++R+SED F ++T G+DFKVR + L+ K++K+QIWDTAGQER IT YY+G+ GI L+Y++ D SF N+ WM NI+QHA D V K+LIGNKAD+ + + +P +G A+A E+G V F+ETSAKTG NV + F A+A DI +R+ EA + Sbjct: 11 IKLLLIGDSGVGKSCLLLRFSEDSFTQSYITTIGIDFKVRTIELD--GKRMKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFDNIRNWMKNIEQHASDTVNKILIGNKADMDESKKVVPTSRGQALADEYG-VKFFETSAKTGYNVEQGFFAIAGDIKQRLAEADS 181
BLAST of NO03G02880 vs. NCBI_GenBank
Match: NP_187601.1 (RAB GTPase homolog E1E [Arabidopsis thaliana] >Q9SF91.1 RecName: Full=Ras-related protein RABE1e; Short=AtRABE1e; AltName: Full=Ras-related protein Rab8E; Short=AtRab8E >AAF23246.1 putative Ras-like GTP-binding protein [Arabidopsis thaliana] >AAM60928.1 putative Ras-like GTP-binding protein [Arabidopsis thaliana] >ABD94081.1 At3g09900 [Arabidopsis thaliana] >BAF01157.1 putative Ras-like GTP-binding protein [Arabidopsis thaliana] >AEE74828.1 RAB GTPase homolog E1E [Arabidopsis thaliana] >OAP01624.1 RABE1e [Arabidopsis thaliana]) HSP 1 Score: 186.4 bits (472), Expect = 1.300e-43 Identity = 87/174 (50.00%), Postives = 127/174 (72.99%), Query Frame = 0 Query: 111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADL--ADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQT 283 I++LL+GDSGVGK+ L++R+S+D F ++T G+DFK+R + L+ K++K+QIWDTAGQER IT YY+G+ GI L+Y++ D SF N+ WM NI+QHA D V K+L+GNKAD+ + RA+P +G A+A E+G + F+ETSAKT NV + F ++A DI +R+ E+ T Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNQNVEQVFLSIAKDIKQRLTESDT 186
BLAST of NO03G02880 vs. NCBI_GenBank
Match: XP_002882643.1 (ras-related protein RABE1e isoform X1 [Arabidopsis lyrata subsp. lyrata] >EFH58902.1 hypothetical protein ARALYDRAFT_478314 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 186.4 bits (472), Expect = 1.300e-43 Identity = 87/174 (50.00%), Postives = 127/174 (72.99%), Query Frame = 0 Query: 111 IRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESKKKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMANIQQHAGDKVVKVLIGNKADL--ADRAIPYEQGAAMAKEFGFVHFYETSAKTGANVHEAFNALAMDIVRRIEEAQT 283 I++LL+GDSGVGK+ L++R+S+D F ++T G+DFK+R + L+ K++K+QIWDTAGQER IT YY+G+ GI L+Y++ D SF N+ WM NI+QHA D V K+L+GNKAD+ + RA+P +G A+A E+G + F+ETSAKT NV + F ++A DI +R+ E+ T Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNQNVEQVFLSIAKDIKQRLTESDT 186 The following BLAST results are available for this feature:
BLAST of NO03G02880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G02880 ID=NO03G02880|Name=NO03G02880|organism=Nannochloropsis oceanica|type=gene|length=1212bpback to top protein sequence of NO03G02880.1 >NO03G02880.1-protein ID=NO03G02880.1-protein|Name=NO03G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bpback to top Synonyms
Publications
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