NO03G02350, NO03G02350 (gene) Nannochloropsis oceanica

Overview
NameNO03G02350
Unique NameNO03G02350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1114
Alignment locationchr3:679661..680774 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:679661..680774 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021434DUF3082
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO03G02350 vs. NCBI_GenBank
Match: EWM29659.1 (hypothetical protein Naga_100112g10 [Nannochloropsis gaditana])

HSP 1 Score: 322.8 bits (826), Expect = 1.300e-84
Identity = 176/268 (65.67%), Postives = 201/268 (75.00%), Query Frame = 0
Query:   69 PMSLLGLLLMLAGAGCCIQAFILPLPRRPKVGLLQLHRQHPCRQRGALFASTTQEPGSDAPADSISPTPSTLASNAVTPSGKGFGTAPPPVARAKTGTVNKRLMNVIDAELKVVRDNQPEEATPLSEDDTDLNGINPIQPLGAAVFAAFISFLFWRITFGLANTLNNVHLDTDFYPAKRVFGIASTAFVGITALGAGVIGVTAIGLLGLTVRVMYGIITGELDMNKKKYVPPVNTSSVPLDSNGLPKITGAWYDIKAPVKAPAEETKE 337
            P  L+ L +      CC+  F+LP+  RP  G     ++   RQR     STTQEPGS+AP DS+      +A N+    GKGFG    P  RAK GTVNKRLMNVIDAEL  VRD QPEEATPLSE+DTDLNGINP+QPLGAA+FAAFISFLFWRITFGLA  LNNVHLDTDFYPA+RVFGIASTAFVGITALGAGVIGVTAIGLLGL  RV +G+++GELDMNKKK  PP ++S VPLD+ GLPK+TGAWYD+  P  A AEE K+
Sbjct:   24 PSFLVALYVTATLTLCCVHGFVLPM--RPSQGGDVRFQRPSWRQRDVSVLSTTQEPGSEAPGDSMPLGARPVAPNSA--GGKGFGPTSTP-TRAKIGTVNKRLMNVIDAELDGVRDRQPEEATPLSEEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELDMNKKKIAPPADSSPVPLDAQGLPKVTGAWYDVSPPAPA-AEEPKD 285          
BLAST of NO03G02350 vs. NCBI_GenBank
Match: XP_002286892.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96533.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 77.8 bits (190), Expect = 7.200e-11
Identity = 53/148 (35.81%), Postives = 78/148 (52.70%), Query Frame = 0
Query:  160 ARAKTGTVNKRLMNVIDAEL---------------KVVRDNQPEEATPLS-EDDTDLNGINPIQPLGAAVFAAFISFLFWRITFGLANTLNNVHLDTDFYPAKRVFGIASTAFVGITALGAGVIGVTAIGLLGLTVRVMYGIITGELD 292
            A+A T TVN+RLM+ I A +               +  R  + EE    S E+  DLNG+NP+  +G A FA   +   W  T  L     +  L+TD Y  +R+ G+   A +G+++L +G  GV  IG+  L +RV YG++TGELD
Sbjct:  100 AKAATSTVNERLMSEIQASVDDQKYGTNKKNREYFREFRSQKTEEERRRSIEEAKDLNGVNPLVCIGGAAFAWACAGGLWFFTTYLGVLFASHPLETDIYFIQRLTGVFRNAVMGLSSLASGFFGVVGIGIFLLGIRVAYGVMTGELD 247          
BLAST of NO03G02350 vs. NCBI_GenBank
Match: OLP81921.1 (Solute carrier family 2, facilitated glucose transporter member 3 [Symbiodinium microadriaticum])

HSP 1 Score: 74.3 bits (181), Expect = 7.900e-10
Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 0
Query:  188 EEATPLSEDDTDLNGINPIQPLGAAVFAAFISFLFWRITFGLANTLNNVHLDTDFYPAKRVFGIASTAFVGITALGAGVIGVTAIGLLGLTVRVMYGIITGELD-MNKKKYVPPVNTSSVPLD 310
            E+   + + + DLNGI+P      A   A +S+ FW  T   A    N  +++DFYP +R+  +   A VG+++L +G+ G TA+G+  L VRV  G+++GELD  +K K V   +T+   LD
Sbjct: 1473 EDQKRIVQQEVDLNGIDPTACFVGAAPVAALSYGFWTFTSRSAEWFYNHPVESDFYPVQRLGFVFQAAVVGLSSLASGIFGFTALGIFLLGVRVSIGVLSGELDPADKSKGVGKRSTAETVLD 1595          
BLAST of NO03G02350 vs. NCBI_GenBank
Match: EJK62087.1 (hypothetical protein THAOC_17315 [Thalassiosira oceanica])

HSP 1 Score: 73.9 bits (180), Expect = 1.000e-9
Identity = 54/156 (34.62%), Postives = 77/156 (49.36%), Query Frame = 0
Query:  151 GFGTAPPPVARAKTGTVNKRLMNVIDAELKVV--------------RDNQPEEATPLS-EDDTDLNGINPIQPLGAAVFAAFISFLFWRITFGLANTLNNVHLDTDFYPAKRVFGIASTAFVGITALGAGVIGVTAIGLLGLTVRVMYGIITGELD 292
            G  T   PV +A T TVN+RLM+ I A +                 R  + EE    S E+  DLNG+NP+  +G A F+   +   W  T  LA       LDTD Y  +R+  +   A +G+++L +G  GV  +G+  L +RV YG+  GELD
Sbjct:  111 GSTTTAEPV-KAATSTVNERLMSEIQASVDTTKYGDSKKREYFNEFRSQKTEEERQRSIEEAKDLNGVNPLVCMGGATFSWACAGALWIFTQFLAQLFATHPLDTDIYFVQRLAQVFRNAVLGLSSLASGFFGVIGVGIFLLGLRVAYGVARGELD 265          
BLAST of NO03G02350 vs. NCBI_GenBank
Match: CBJ29167.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 66.2 bits (160), Expect = 2.200e-7
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 0
Query:  161 RAKTGTVNKRLMNVIDAELKVVRDNQPEEATPLSEDDTDLNGINPIQPLGAAVFAAFISFLFWRITFGLANT-LNNVHLDTDFYPAKRVFGIASTAFVGITALGAGVIGVTAIGLLGLTVRVMYGIITGELD 292
            +AK  TVN RL+  I+ + K +     EE+  +   + DLNG+NP   +  A  AA +SF  W+ T  LA    +    ++D     R+      A VG+ ALGAG+ GVTA+G+  +   V  G+  GELD
Sbjct:   89 KAKLQTVNARLLAQIEEQGKGI-VIPTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELD 219          
BLAST of NO03G02350 vs. NCBI_GenBank
Match: GAX22069.1 (hypothetical protein FisN_6Hh316 [Fistulifera solaris])

HSP 1 Score: 64.7 bits (156), Expect = 6.300e-7
Identity = 47/146 (32.19%), Postives = 68/146 (46.58%), Query Frame = 0
Query:  162 AKTGTVNKRLMNVID---------AELKVVRD-------NQPEEATPLSEDDTDLNGINPIQPLGAAVFAAFISFLFWRITFGLANTLNNVHLDTDFYPAKRVFGIASTAFVGITALGAGVIGVTAIGLLGLTVRVMYGIITGELD 292
            A+TGTVN+RLM  +          A  K  ++          EE         +LNG+NP+      V A   +F  W +T   A    +  + +DFY  +R+  +     +GI +L  G  GVT +G+  L VRV YG+ TGELD
Sbjct:   46 AQTGTVNERLMQELQEAKQKEKFGARSKFSKNFDGFRSQKTDEEREAAIAAARNLNGVNPVVTTIGGVLALAAAFGLWTLTTTAAEFFASHPVVSDFYVVERLAAVFRNVVMGIISLATGFFGVTGLGIFLLGVRVAYGVATGELD 191          
BLAST of NO03G02350 vs. NCBI_GenBank
Match: GAX14538.1 (hypothetical protein FisN_6Lh316 [Fistulifera solaris])

HSP 1 Score: 64.7 bits (156), Expect = 6.300e-7
Identity = 46/145 (31.72%), Postives = 68/145 (46.90%), Query Frame = 0
Query:  163 KTGTVNKRLMNVID---------AELKVVRD-------NQPEEATPLSEDDTDLNGINPIQPLGAAVFAAFISFLFWRITFGLANTLNNVHLDTDFYPAKRVFGIASTAFVGITALGAGVIGVTAIGLLGLTVRVMYGIITGELD 292
            +TGTVN+RLM  +          A  K  ++          EE         +LNG+NP+      V A   +F  W +T   A    +  +++DFY  +R+  +     +GI +L  G  GVT +G+  L VRV YG+ TGELD
Sbjct:   68 QTGTVNERLMQELQEAKQKEKFGARSKFSKNFDGFRSQKTDEEREAAIAAARNLNGVNPVVTTIGGVLALAAAFGLWTLTTTAAEFFASHPVNSDFYVVERLAAVFRNVVMGIISLATGFFGVTGLGIFLLGVRVAYGVATGELD 212          
The following BLAST results are available for this feature:
BLAST of NO03G02350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM29659.11.300e-8465.67hypothetical protein Naga_100112g10 [Nannochlorops... [more]
XP_002286892.17.200e-1135.81predicted protein [Thalassiosira pseudonana CCMP13... [more]
OLP81921.17.900e-1035.77Solute carrier family 2, facilitated glucose trans... [more]
EJK62087.11.000e-934.62hypothetical protein THAOC_17315 [Thalassiosira oc... [more]
CBJ29167.12.200e-735.61conserved unknown protein [Ectocarpus siliculosus][more]
GAX22069.16.300e-732.19hypothetical protein FisN_6Hh316 [Fistulifera sola... [more]
GAX14538.16.300e-731.72hypothetical protein FisN_6Lh316 [Fistulifera sola... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL067nonsL067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR049ngnoR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005679NSK005679Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02350.1NO03G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572037gene_1421Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100112g10gene972Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02350.1NO03G02350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02350 ID=NO03G02350|Name=NO03G02350|organism=Nannochloropsis oceanica|type=gene|length=1114bp
ATGGGACGTTGGATTTCTTACGCTGCGGGCTTCGACTTAGATCAGCACTC
CCAGCCTCCCGCACTAACCATGTTCACCCCACCCACCCCAGCAGTTAACG
TACTACCCTGGCACTTCAGGACGCTTCATACATCCTCCTCCACAATGCTA
TCGAGCCAAAGAAGGAGTGGAGGCGCACTTTATCCGCGCACTATCCGCCG
CTGGCCAATGAGCCTCCTCGGGTTGCTGTTGATGTTGGCCGGCGCTGGCT
GCTGCATTCAAGCATTCATCCTGCCCTTACCGCGACGGCCAAAAGTGGGA
CTTCTGCAACTACATCGTCAACATCCCTGCCGACAACGCGGCGCACTCTT
TGCCTCGACTACTCAAGAACCGGGAAGCGACGCACCAGCAGACTCAATCA
GCCCAACCCCCAGCACCCTGGCCTCAAACGCTGTTACTCCAAGCGGCAAG
GGCTTTGGCACCGCGCCGCCACCAGTCGCGCGAGCTAAAACTGGCACGGT
TAACAAACGATTAATGAACGTGATTGATGCTGAGCTAAAGGTGGTACGCG
ACAACCAACCAGAAGAAGCCACGCCCCTTTCGGAAGACGACACGGATCTC
AATGGCATTAATCCCATCCAACCCTTGGGTGCTGCTGTCTTTGCCGCCTT
TATTTCCTTCTTGTTCTGGCGTATTACTTTCGGTCTTGCCAATACCTTAA
ATAATGTGCATCTGGACACGGACTTCTATCCGGCCAAGCGGGTGTTCGGA
ATTGCGTCGACTGCCTTTGTGGGCATCACGGCATTGGGGGCTGGTGTTAT
TGGCGTGACTGCGATTGGTCTATTAGGCTTGACTGTACGCGTTATGTATG
GAATTATCACGGGGGAATTGGACATGAATAAGAAGAAGTACGTGCCACCG
GTGAATACTAGCTCGGTGCCTCTGGACTCGAATGGATTGCCCAAGATTAC
CGGGGCGTGGTATGATATCAAGGCGCCAGTCAAGGCGCCAGCGGAGGAGA
CGAAAGAGTAAAGGGATAGAGGTTTTTGTGTGTGGATATGTTTTGAGTGA
TTAAGGTGATGGTGCTGCTGGGTAGGAGAATGGGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAG
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protein sequence of NO03G02350.1

>NO03G02350.1-protein ID=NO03G02350.1-protein|Name=NO03G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MGRWISYAAGFDLDQHSQPPALTMFTPPTPAVNVLPWHFRTLHTSSSTML
SSQRRSGGALYPRTIRRWPMSLLGLLLMLAGAGCCIQAFILPLPRRPKVG
LLQLHRQHPCRQRGALFASTTQEPGSDAPADSISPTPSTLASNAVTPSGK
GFGTAPPPVARAKTGTVNKRLMNVIDAELKVVRDNQPEEATPLSEDDTDL
NGINPIQPLGAAVFAAFISFLFWRITFGLANTLNNVHLDTDFYPAKRVFG
IASTAFVGITALGAGVIGVTAIGLLGLTVRVMYGIITGELDMNKKKYVPP
VNTSSVPLDSNGLPKITGAWYDIKAPVKAPAEETKE*
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Synonyms
Publications