NO03G02350.1, NO03G02350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02350.1
Unique NameNO03G02350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1114
Alignment locationchr3:679661..680774 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:679661..680774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G02350.1 vs.
Match: EWM29659.1 (hypothetical protein Naga_100112g10 [Nannochloropsis gaditana])

HSP 1 Score: 322.8 bits (826), Expect = 1.300e-84
Identity = 176/268 (65.67%), Postives = 201/268 (75.00%), Query Frame = 0 
Query:   69 PMSLLGLLLMLAGAGCCIQAFILPLPRRPKVGLLQLHRQHPCRQRGALFASTTQEPGSDAPADSISPTPSTLASNAVTPSGKGFGTAPPPVARAKTGTVNKRLMNVIDAELKVVRDNQPEEATPLSEDDTDLNGINPIQPLGAAVFAAFISFLFWRITFGLANTLNNVHLDTDFYPAKRVFGIASTAFVGITALGAGVIGVTAIGLLGLTVRVMYGIITGELDMNKKKYVPPVNTSSVPLDSNGLPKITGAWYDIKAPVKAPAEETKE 337
            P  L+ L +      CC+  F+LP+  RP  G     ++   RQR     STTQEPGS+AP DS+      +A N+    GKGFG    P  RAK GTVNKRLMNVIDAEL  VRD QPEEATPLSE+DTDLNGINP+QPLGAA+FAAFISFLFWRITFGLA  LNNVHLDTDFYPA+RVFGIASTAFVGITALGAGVIGVTAIGLLGL  RV +G+++GELDMNKKK  PP ++S VPLD+ GLPK+TGAWYD+  P  A AEE K+
Sbjct:   24 PSFLVALYVTATLTLCCVHGFVLPM--RPSQGGDVRFQRPSWRQRDVSVLSTTQEPGSEAPGDSMPLGARPVAPNSA--GGKGFGPTSTPT-RAKIGTVNKRLMNVIDAELDGVRDRQPEEATPLSEEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELDMNKKKIAPPADSSPVPLDAQGLPKVTGAWYDVSPPAPA-AEEPKD 285
The following BLAST results are available for this feature:
BLAST of NO03G02350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29659.11.300e-8465.67hypothetical protein Naga_100112g10 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02350NO03G02350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02350.1NO03G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02350.1.cds1NO03G02350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02350.1 ID=NO03G02350.1|Name=NO03G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp
ATGGGACGTTGGATTTCTTACGCTGCGGGCTTCGACTTAGATCAGCACTC
CCAGCCTCCCGCACTAACCATGTTCACCCCACCCACCCCAGCAGTTAACG
TACTACCCTGGCACTTCAGGACGCTTCATACATCCTCCTCCACAATGCTA
TCGAGCCAAAGAAGGAGTGGAGGCGCACTTTATCCGCGCACTATCCGCCG
CTGGCCAATGAGCCTCCTCGGGTTGCTGTTGATGTTGGCCGGCGCTGGCT
GCTGCATTCAAGCATTCATCCTGCCCTTACCGCGACGGCCAAAAGTGGGA
CTTCTGCAACTACATCGTCAACATCCCTGCCGACAACGCGGCGCACTCTT
TGCCTCGACTACTCAAGAACCGGGAAGCGACGCACCAGCAGACTCAATCA
GCCCAACCCCCAGCACCCTGGCCTCAAACGCTGTTACTCCAAGCGGCAAG
GGCTTTGGCACCGCGCCGCCACCAGTCGCGCGAGCTAAAACTGGCACGGT
TAACAAACGATTAATGAACGTGATTGATGCTGAGCTAAAGGTGGTACGCG
ACAACCAACCAGAAGAAGCCACGCCCCTTTCGGAAGACGACACGGATCTC
AATGGCATTAATCCCATCCAACCCTTGGGTGCTGCTGTCTTTGCCGCCTT
TATTTCCTTCTTGTTCTGGCGTATTACTTTCGGTCTTGCCAATACCTTAA
ATAATGTGCATCTGGACACGGACTTCTATCCGGCCAAGCGGGTGTTCGGA
ATTGCGTCGACTGCCTTTGTGGGCATCACGGCATTGGGGGCTGGTGTTAT
TGGCGTGACTGCGATTGGTCTATTAGGCTTGACTGTACGCGTTATGTATG
GAATTATCACGGGGGAATTGGACATGAATAAGAAGAAGTACGTGCCACCG
GTGAATACTAGCTCGGTGCCTCTGGACTCGAATGGATTGCCCAAGATTAC
CGGGGCGTGGTATGATATCAAGGCGCCAGTCAAGGCGCCAGCGGAGGAGA
CGAAAGAGTAAAGGGATAGAGGTTTTTGTGTGTGGATATGTTTTGAGTGA
TTAAGGTGATGGTGCTGCTGGGTAGGAGAATGGGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAG
back to top

protein sequence of NO03G02350.1

>NO03G02350.1-protein ID=NO03G02350.1-protein|Name=NO03G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MGRWISYAAGFDLDQHSQPPALTMFTPPTPAVNVLPWHFRTLHTSSSTML
SSQRRSGGALYPRTIRRWPMSLLGLLLMLAGAGCCIQAFILPLPRRPKVG
LLQLHRQHPCRQRGALFASTTQEPGSDAPADSISPTPSTLASNAVTPSGK
GFGTAPPPVARAKTGTVNKRLMNVIDAELKVVRDNQPEEATPLSEDDTDL
NGINPIQPLGAAVFAAFISFLFWRITFGLANTLNNVHLDTDFYPAKRVFG
IASTAFVGITALGAGVIGVTAIGLLGLTVRVMYGIITGELDMNKKKYVPP
VNTSSVPLDSNGLPKITGAWYDIKAPVKAPAEETKE*
back to top

mRNA from alignment at chr3:679661..680774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02350.1 ID=NO03G02350.1|Name=NO03G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp|location=Sequence derived from alignment at chr3:679661..680774- (Nannochloropsis oceanica)
ATGGGACGTTGGATTTCTTACGCTGCGGGCTTCGACTTAGATCAGCACTC
CCAGCCTCCCGCACTAACCATGTTCACCCCACCCACCCCAGCAGTTAACG
TACTACCCTGGCACTTCAGGACGCTTCATACATCCTCCTCCACAATGCTA
TCGAGCCAAAGAAGGAGTGGAGGCGCACTTTATCCGCGCACTATCCGCCG
CTGGCCAATGAGCCTCCTCGGGTTGCTGTTGATGTTGGCCGGCGCTGGCT
GCTGCATTCAAGCATTCATCCTGCCCTTACCGCGACGGCCAAAAGTGGGA
CTTCTGCAACTACATCGTCAACATCCCTGCCGACAACGCGGCGCACTCTT
TGCCTCGACTACTCAAGAACCGGGAAGCGACGCACCAGCAGACTCAATCA
GCCCAACCCCCAGCACCCTGGCCTCAAACGCTGTTACTCCAAGCGGCAAG
GGCTTTGGCACCGCGCCGCCACCAGTCGCGCGAGCTAAAACTGGCACGGT
TAACAAACGATTAATGAACGTGATTGATGCTGAGCTAAAGGTGGTACGCG
ACAACCAACCAGAAGAAGCCACGCCCCTTTCGGAAGACGACACGGATCTC
AATGGCATTAATCCCATCCAACCCTTGGGTGCTGCTGTCTTTGCCGCCTT
TATTTCCTTCTTGTTCTGGCGTATTACTTTCGGTCTTGCCAATACCTTAA
ATAATGTGCATCTGGACACGGACTTCTATCCGGCCAAGCGGGTGTTCGGA
ATTGCGTCGACTGCCTTTGTGGGCATCACGGCATTGGGGGCTGGTGTTAT
TGGCGTGACTGCGATTGGTCTATTAGGCTTGACTGTACGCGTTATGTATG
GAATTATCACGGGGGAATTGGACATGAATAAGAAGAAGTACGTGCCACCG
GTGAATACTAGCTCGGTGCCTCTGGACTCGAATGGATTGCCCAAGATTAC
CGGGGCGTGGTATGATATCAAGGCGCCAGTCAAGGCGCCAGCGGAGGAGA
CGAAAGAGTAAAGGGATAGAGGTTTTTGTGTGTGGATATGTTTTGAGTGA
TTAAGGTGATGGTGCTGCTGGGTAGGAGAATGGGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAG
back to top

Coding sequence (CDS) from alignment at chr3:679661..680774-

>NO03G02350.1 ID=NO03G02350.1|Name=NO03G02350.1|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at chr3:679661..680774- (Nannochloropsis oceanica)
ATGGGACGTTGGATTTCTTACGCTGCGGGCTTCGACTTAGATCAGCACTC
CCAGCCTCCCGCACTAACCATGTTCACCCCACCCACCCCAGCAGTTAACG
TACTACCCTGGCACTTCAGGACGCTTCATACATCCTCCTCCACAATGCTA
TCGAGCCAAAGAAGGAGTGGAGGCGCACTTTATCCGCGCACTATCCGCCG
CTGGCCAATGAGCCTCCTCGGGTTGCTGTTGATGTTGGCCGGCGCTGGCT
GCTGCATTCAAGCATTCATCCTGCCCTTACCGCGACGGCCAAAAGTGGGA
CTTCTGCAACTACATCGTCAACATCCCTGCCGACAACGCGGCGCACTCTT
TGCCTCGACTACTCAAGAACCGGGAAGCGACGCACCAGCAGACTCAATCA
GCCCAACCCCCAGCACCCTGGCCTCAAACGCTGTTACTCCAAGCGGCAAG
GGCTTTGGCACCGCGCCGCCACCAGTCGCGCGAGCTAAAACTGGCACGGT
TAACAAACGATTAATGAACGTGATTGATGCTGAGCTAAAGGTGGTACGCG
ACAACCAACCAGAAGAAGCCACGCCCCTTTCGGAAGACGACACGGATCTC
AATGGCATTAATCCCATCCAACCCTTGGGTGCTGCTGTCTTTGCCGCCTT
TATTTCCTTCTTGTTCTGGCGTATTACTTTCGGTCTTGCCAATACCTTAA
ATAATGTGCATCTGGACACGGACTTCTATCCGGCCAAGCGGGTGTTCGGA
ATTGCGTCGACTGCCTTTGTGGGCATCACGGCATTGGGGGCTGGTGTTAT
TGGCGTGACTGCGATTGGTCTATTAGGCTTGACTGTACGCGTTATGTATG
GAATTATCACGGGGGAATTGGACATGAATAAGAAGAAGTACGTGCCACCG
GTGAATACTAGCTCGGTGCCTCTGGACTCGAATGGATTGCCCAAGATTAC
CGGGGCGTGGTATGATATCAAGGCGCCAGTCAAGGCGCCAGCGGAGGAGA
CGAAAGAGTAA
back to top
Synonyms
Publications