NO03G01620, NO03G01620 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G01620
Unique Name	NO03G01620
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2509
Alignment location	chr3:512750..515258 -

Link to JBrowse

Properties


Property Name	Value
Description	Deoxyribodipyrimidine photo-lyase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:512750..515258 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036134	Crypto/Photolyase_FAD-like_sf
IPR036155	Crypto/Photolyase_N_sf
IPR006050	DNA_photolyase_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Homology

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BLAST of NO03G01620 vs. NCBI_GenBank
Match: EWM29541.1 (deoxyribodipyrimidine photo-lyase [Nannochloropsis gaditana])

HSP 1 Score: 567.0 bits (1460), Expect = 6.400e-158
Identity = 279/374 (74.60%), Postives = 310/374 (82.89%), Query Frame = 0

Query:    7 KKRSGSTEESAAAGSKKPKAG--SSLAFPDYFVPGRMRVLTT--TTPQASGKSVLYWMVRDQRADDNYALLLARHLASQQNVPVAVCFNLTPPTPEDPLATLRAYGWMLKGLKEVEAALKAKNVPFFLLQGGTPSEMVPALASELQASSVITDFSPLREALVHAQAVATSLDRAGRPLLQVDAHNIVPVWQASPKLEVGARTIRKKIHDLLPTYFKPFPVEGLLPNDPAAVAGMPGRKPRDGGVEWEKVLAGLTIDRSVKEIDWLQPGAAAGWANLDGFIEKRLKIFAEKRNDPTEAAISHMSPYFNFGQVSVQAAMLKVKGVKRYHDSVAAFVEEGVVRRELSDNFCFYQPKYDSLEGAAGWAQETLRVHAAD 377
            KKRSG+ +E     +KKPKAG  +S+  PD+F PGR+R LTT  T PQA+GK V+YWM RDQR +DN+A+LLARHLA+QQNVPV VCFNLTPP P DPLATLRAYGWML+GL+EVEAALK K++PF+LLQ G P +MVPAL SELQAS+VITDFSPLR  L  AQAVA +LD AGRPL QVDAHNIVPVWQASPKLEVGARTIRKKIHDLLP YF PFP EGL PND AAV  +PGR     G  +EKVL  L +D  VKEIDWLQPGA AGW NLD F+EK L+ FAEKRNDPTE AIS+MSPYFNFGQVSVQA MLKVK VKRYHDS+AAF+EEGVVRRELSDNFCFYQP+YDSL  AAGWAQE+LRVH  D
Sbjct:    5 KKRSGAIDEGTPGPTKKPKAGDSASIKLPDWFTPGRLRTLTTSCTKPQAAGKCVVYWMARDQRVEDNWAMLLARHLATQQNVPVVVCFNLTPPVPNDPLATLRAYGWMLRGLQEVEAALKRKHIPFYLLQEGPPEDMVPALVSELQASAVITDFSPLRGPLADAQAVAAALDAAGRPLFQVDAHNIVPVWQASPKLEVGARTIRKKIHDLLPKYFTPFPAEGLAPNDAAAVRALPGRSAPPEGFGYEKVLGRLHLDSGVKEIDWLQPGARAGWENLDTFLEKGLRFFAEKRNDPTEPAISNMSPYFNFGQVSVQAVMLKVKAVKRYHDSIAAFIEEGVVRRELSDNFCFYQPEYDSLAAAAGWAQESLRVHTND 378

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BLAST of NO03G01620 vs. NCBI_GenBank
Match: CBN78764.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 511.5 bits (1316), Expect = 3.200e-141
Identity = 258/488 (52.87%), Postives = 325/488 (66.60%), Query Frame = 0

Query:   30 LAFPDYFVPGRMRVLT-TTTPQASGKSVLYWMVRDQRADDNYALLLARHLASQQNVPVAVCFNLTPPTPEDPLATLRAYGWMLKGLKEVEAALKAKNVPFFLLQGGTPSEMVPALASELQASSVITDFSPLREALVHAQAVATSLDRA--GRPLLQVDAHNIVPVWQASPKLEVGARTIRKKIHDLLPTYFKPFPVEGLLPNDPAAVAGMPGRKPRDGGVEWEKVLAGLTIDRSVKEIDWLQPGAAAGWANLDGFIEKRLKIFAEKRNDPTEAAISHMSPYFNFGQVSVQAAMLKVKGVKRYHDSVAAFVEEGVVRRELSDNFCFYQPKYDSLEGAAGWAQETLRVHAADERQYCYTPAQLEEGQTHDQLWNASQLQLVQEGKMHGFLRMYWAKKILEWTASPTAALAVALQLNDRYSIDGRDPNGFVGVGWSVMGVHDMGWTERKLVGKIRYMNYAGCLRKFDVEEFCARYPAAIAAARKVQAALSP 515
            L  PD+F   R+R LT  + P+  G  V+YWM RDQRA+DN+A+L A++LA +  VP+ V F L      +P  TLR  G+MLKGL+E E  L+ K +PF LLQ   P ++VPA A EL A +++TD  PLR+    A+ VA  L+++  G PL QVDAHN+VPVW  S K E  ARTIR KIH   P +    P   L PN        P         +W+     L +DRSV EI WL+PGA     NL  FIE R+K FA+  N+P E   SHMSPYFN GQ+S QAA+++VK  +R+ D V AFVE+GVVRRELSDNFCFY   YD+L GAAGWA+E+L  HA D+R++ Y+  +LEE +TH+ LWNA+QLQLV++GKMH FLRMYWAKKILEW+ SP  AL   L  ND+Y +DGRDPNGF G  WSVMG+HDMGW ER++ GKIRYMNYAGC RKFDV+EF ++Y  A  AA      ++P
Sbjct:    4 LETPDWFKAERVRCLTDASVPRDQGNCVVYWMSRDQRAEDNWAMLYAKNLAQEGGVPLVVAFVLGAWQVTEPKTTLRYAGFMLKGLEETEGDLRKKKIPFHLLQAAEPRDVVPAFAKELGALAIVTDMCPLRDPTRRAREVAEELNKSGDGTPLFQVDAHNVVPVWATSDKQETMARTIRPKIH-ARPDFLGAIP--ELSPN--------PQGTKLPAATDWKAAQTSLDLDRSVPEISWLKPGAKGASDNLQSFIETRMKGFADLSNNPNEDVCSHMSPYFNLGQMSAQAAVMRVKASRRHPDGVKAFVEQGVVRRELSDNFCFYNDNYDNLSGAAGWARESLEAHANDQREWTYSVQELEEAKTHEDLWNAAQLQLVRDGKMHNFLRMYWAKKILEWSPSPHDALERCLFFNDKYELDGRDPNGFTGCAWSVMGIHDMGWKEREVFGKIRYMNYAGCKRKFDVQEFVSKYAGAGEAAVAAGGTVAP 480

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BLAST of NO03G01620 vs. NCBI_GenBank
Match: XP_021171347.1 (deoxyribodipyrimidine photo-lyase-like [Fundulus heteroclitus])

HSP 1 Score: 495.0 bits (1273), Expect = 3.100e-136
Identity = 253/461 (54.88%), Postives = 315/461 (68.33%), Query Frame = 0

Query:   40 RMRVLTTTTPQASGK-SVLYWMVRDQRADDNYALLLARHLASQQNVPVAVCFNLTPPTPEDPLATLRAYGWMLKGLKEVEAALKAKNVPFFLLQGGTPSEMVPALASELQASSVITDFSPLREALVHAQAVATSLDRAGRPLLQVDAHNIVPVWQASPKLEVGARTIRKKIHDLLPTYFKPFPVEGLLPNDPAAVAGMPGRKPRDGGVEWEKVLAGLTIDRSVKEIDWLQPGAAAGWANLDGFIEKRLKIFAEKRNDPTEAAISHMSPYFNFGQVSVQAAMLKVKGV-KRYHDSVAAFVEEGVVRRELSDNFCFYQPKYDSLEGAAGWAQETLRVHAADERQYCYTPAQLEEGQTHDQLWNASQLQLVQEGKMHGFLRMYWAKKILEWTASPTAALAVALQLNDRYSIDGRDPNGFVGVGWSVMGVHDMGWTERKLVGKIRYMNYAGCLRKFDVEEFCARY 499
            R RVL+       G   VLYWM+RDQR  DN+AL+ A+ LA+++ +P+ VCF L    P+ PL+TLR Y ++LKGL+EV    K  NV F LL  G P E++P   S+    +V+TDFSPLRE     + V   L +   PL+QVDAHNIVP W ASPKLE  ARTIR KI +LLP +   FPV    P+     A     KP    V+WEK LA L +DR+V E  W +PG+ AG A L+ FI+ RLK+FA +RNDP  AA+S +SP+  FGQ+S Q   L+V+   K   +SVA F+EE VVRREL+DNFCFY  KYD +EGA  WAQ+TLR HA D+R+Y YT  QLE+ QTHD+LWN +Q Q+V EGKMHGFLRMYWAKKILEWT SP  AL++ L LNDRY +DG+DPNGFVG  WS+ G+HD GW ER + GKIRYMNY GCLRKF+V +F  +Y
Sbjct:  132 RQRVLSDAAKIKQGSDGVLYWMLRDQRVQDNWALIRAQQLAAKEELPLHVCFCLL--VPKSPLSTLRHYAFLLKGLQEVAKECKRLNVQFHLLH-GAPGEVLPGFVSDQGFGAVVTDFSPLREPQQWLKDVKKKLSK-DTPLIQVDAHNIVPCWVASPKLEYSARTIRGKITNLLPEFLTDFPVIEPHPHTATRTA-----KP----VDWEKTLASLDVDRTVGEPQWAKPGSDAGMAMLESFIDVRLKLFATQRNDPNMAALSQLSPWIRFGQLSAQRVALQVRRCGKNASESVAPFIEELVVRRELTDNFCFYNEKYDKVEGAYEWAQKTLRDHAKDKREYLYTQEQLEKAQTHDKLWNGAQYQMVTEGKMHGFLRMYWAKKILEWTRSPEEALSIGLYLNDRYELDGQDPNGFVGCMWSICGIHDQGWAERPVFGKIRYMNYKGCLRKFNVAQFEKKY 579

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BLAST of NO03G01620 vs. NCBI_GenBank
Match: XP_015829836.1 (PREDICTED: deoxyribodipyrimidine photo-lyase-like [Nothobranchius furzeri])

HSP 1 Score: 493.0 bits (1268), Expect = 1.200e-135
Identity = 245/457 (53.61%), Postives = 318/457 (69.58%), Query Frame = 0

Query:   40 RMRVLTTTTPQASG-KSVLYWMVRDQRADDNYALLLARHLASQQNVPVAVCFNLTPPTPEDPLATLRAYGWMLKGLKEVEAALKAKNVPFFLLQGGTPSEMVPALASELQASSVITDFSPLREALVHAQAVATSLDRAGRPLLQVDAHNIVPVWQASPKLEVGARTIRKKIHDLLPTYFKPFPVEGLLPNDPAAVAGMPGRKPRDGGVEWEKVLAGLTIDRSVKEIDWLQPGAAAGWANLDGFIEKRLKIFAEKRNDPTEAAISHMSPYFNFGQVSVQAAMLKVKGV-KRYHDSVAAFVEEGVVRRELSDNFCFYQPKYDSLEGAAGWAQETLRVHAADERQYCYTPAQLEEGQTHDQLWNASQLQLVQEGKMHGFLRMYWAKKILEWTASPTAALAVALQLNDRYSIDGRDPNGFVGVGWSVMGVHDMGWTERKLVGKIRYMNYAGCLRKFDVEEF 495
            R+R ++ T     G + +LYWM+RDQR  DN+AL+ A+ LA+Q+N+P+ VCF L    P+ PL+TLR Y ++LKGL+EV    K  N+ F LL G    +++PA  S+    +V+TDFSPLRE L   + V   L +   PL+QVDAHN+VP W+ASPKLE  ARTIR KI   LP +   FP     P+     A     KP    V+W++ LA L +DRSV+E  W +PG AAG A L+ FI+ RLK+F   RNDP  AA+S +SP+  FG +S Q   L+V+   K   +SVA+F+EE VVRREL+DNFCFY   YDS++GA  WAQ+TL  HA D+R+Y YT  QLE+ QTHD+LWNA+Q Q+V++GKMHGF+RMYWAKKILEWT+SP  AL++AL LNDRY +DG+DPNGFVG  WS+ G+HD GW+ER + GKIRYMNY GCLRKFDV +F
Sbjct:   88 RLRFISETEKVTQGSEGILYWMLRDQRVQDNWALIHAQQLAAQENLPLHVCFCLV--VPKSPLSTLRHYSFLLKGLEEVAKECKQLNIQFHLLHGAA-GDLLPAFVSDRDFGAVVTDFSPLREHLQLLKDVQKKL-KKDVPLMQVDAHNVVPCWEASPKLEYAARTIRGKITSRLPEFLTDFPAVEKHPHTAVRTA-----KP----VDWDEALASLDVDRSVEEPQWAKPGTAAGMAMLESFIDVRLKLFNTHRNDPNAAALSQLSPWIRFGHLSAQRVALQVRRCGKNATESVASFIEELVVRRELTDNFCFYNENYDSVKGAYEWAQKTLNDHAKDKREYLYTREQLEQAQTHDKLWNAAQYQMVRDGKMHGFMRMYWAKKILEWTSSPEEALSIALYLNDRYELDGQDPNGFVGCMWSICGIHDQGWSERPVFGKIRYMNYKGCLRKFDVAQF 531

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BLAST of NO03G01620 vs. NCBI_GenBank
Match: XP_001746666.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ88562.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 491.9 bits (1265), Expect = 2.600e-135
Identity = 253/478 (52.93%), Postives = 323/478 (67.57%), Query Frame = 0

Query:   33 PDYFVPGRMRVLTTTTPQASGKSVLYWMVRDQRADDNYALLLARHLASQQNVPVAVCFNLTPPTPEDPLATLRAYGWMLKGLKEVEAALKAKNVPFFLLQGGTPSEMVPALASELQASSVITDFSPLREALVHAQAVATSLDRAGRPLLQVDAHNIVPVWQASPKLEVGARTIRKKIHDLLPTYFKPFPVEGLLPNDPAAVAGMPGRKPRDGGVEWEKVLAGLTIDRSVKEIDWLQPGAAAGWANLDGFIEKRLKIFAEKRNDPTEAAISHMSPYFNFGQVSVQAAMLKVKGVKR--YHDSVAAFVEEGVVRRELSDNFCFYQPKYDSLEGAAGWAQETLRVHAADERQYCYTPAQLEEGQTHDQLWNASQLQLVQEGKMHGFLRMYWAKKILEWTASPTAALAVALQLNDRYSIDGRDPNGFVGVGWSVMGVHDMGWTERKLVGKIRYMNYAGCLRKFDVEEFCARY-PAAIAAARK 508
            P  F+  R+R +T       G+ VLYWM RDQR  DN+ALL ARHLA +++VP+ V F L P   E   AT+R +G+ML GL+ VE  L+ K++PF LL  G   +++P  A E +A +V+ D SPLR  +   +   + L     PL QVDAHNIVPVW ASPK E  ARTIR KIH  L T  +PFP    L ++  +V  +P        V+W+K    L I+  VKE+DWL+PG   G   L+ FI +RL  +A+ RNDP   A+S++SPY++FGQ+SVQ  +L+++  +R  Y + V A++EE VVRRELSDNFCFY  +YDS+EGA+ WAQETL VH+ D+R++ YT  QLE  +T D LWNASQLQLVQEGKMHGFLRMYWAKKILEWT SP  AL  A+ LND+Y +DGRDPNG+VG  WS+ G+HD GW ER + GKIRYMNY GC RKFD+  F  RY PAA  AAR+
Sbjct:  385 PKDFLMERVRAVTPGVDPKEGQCVLYWMSRDQRPTDNWALLYARHLAQERDVPLRVVFCLVPKFLE---ATIRQFGFMLDGLQVVETHLRKKHIPFHLLT-GYAKDVLPKFAEEQEACAVVCDMSPLRVPMAWVKETGSKLKDMNVPLYQVDAHNIVPVWHASPKQEYAARTIRNKIHQKLDTCLQPFPE---LESNSNSVQ-LPDT------VDWKKARESLEINWDVKEVDWLKPGYEGGMKMLEEFINERLHRYADDRNDPNLDALSNLSPYYHFGQISVQRVVLELRSKQRGKYAEGVKAYIEEAVVRRELSDNFCFYNHRYDSVEGASAWAQETLDVHSKDKREHLYTRKQLENAETADDLWNASQLQLVQEGKMHGFLRMYWAKKILEWTESPEKALEDAIYLNDKYELDGRDPNGYVGCMWSICGIHDQGWGERPVFGKIRYMNYKGCKRKFDIAAFVKRYPPAAKNAARE 848

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BLAST of NO03G01620 vs. NCBI_GenBank
Match: XP_004570537.1 (deoxyribodipyrimidine photo-lyase [Maylandia zebra])

HSP 1 Score: 488.8 bits (1257), Expect = 2.200e-134
Identity = 247/461 (53.58%), Postives = 313/461 (67.90%), Query Frame = 0

Query:   40 RMRVLTTTTPQASG-KSVLYWMVRDQRADDNYALLLARHLASQQNVPVAVCFNLTPPTPEDPLATLRAYGWMLKGLKEVEAALKAKNVPFFLLQGGTPSEMVPALASELQASSVITDFSPLREALVHAQAVATSLDRAGRPLLQVDAHNIVPVWQASPKLEVGARTIRKKIHDLLPTYFKPFPVEGLLPNDPAAVAGMPGRKPRDGGVEWEKVLAGLTIDRSVKEIDWLQPGAAAGWANLDGFIEKRLKIFAEKRNDPTEAAISHMSPYFNFGQVSVQAAMLKV-KGVKRYHDSVAAFVEEGVVRRELSDNFCFYQPKYDSLEGAAGWAQETLRVHAADERQYCYTPAQLEEGQTHDQLWNASQLQLVQEGKMHGFLRMYWAKKILEWTASPTAALAVALQLNDRYSIDGRDPNGFVGVGWSVMGVHDMGWTERKLVGKIRYMNYAGCLRKFDVEEFCARY 499
            R+R L+ T     G + VLYWM+RDQR  DN+AL+ A+ LA ++N+P+ VCF L  P  E  L+TLR Y +MLKGL+EV    +  NV F LL  G P +++P   S+    +V+TDFSP+RE L   + V   L +   P +QVDAHNIVP W ASPK E  ARTIR KI +LLP +   FP+    P+     A          GV+W+K LA L +DR+VKE +W +PG  AG   L+ FI+ RLK+F  +RNDP   A+S +SP+  FGQ+S Q    +V +  K    SV AF+EE VVRREL+DNFCFY  KYDS+EGA  WAQ+TL+ HA DER Y YT  QLE+ +THD+LWNA+Q Q+V EGKMHGFLRMYWAKKILEWT+SP  AL++AL LNDRY +DG+DPNGFVG  WS+ G+HD GW ER + GKIRYMNY GCLRKF+V +F  +Y
Sbjct:  105 RLRFLSDTEKIKQGSEGVLYWMLRDQRVQDNWALIHAQRLAVKENLPLHVCFCLVVPKSE--LSTLRHYSFMLKGLEEVAKECEQLNVQFHLLH-GAPEKVLPGFVSDHSFGAVVTDFSPIREPLQWLEDVKKKLSK-DIPFIQVDAHNIVPCWVASPKQEYSARTIRGKITNLLPEFLTDFPLVDAHPHTATRTA---------KGVDWDKTLASLDVDRNVKEPEWAKPGTKAGMDMLESFIDVRLKLFGSQRNDPNAPALSQLSPWLRFGQISAQRVAWQVQRNGKNASQSVPAFIEELVVRRELTDNFCFYNKKYDSVEGAYEWAQKTLKDHAKDERPYLYTREQLEKAKTHDKLWNAAQYQMVTEGKMHGFLRMYWAKKILEWTSSPEEALSIALYLNDRYELDGQDPNGFVGCMWSICGIHDQGWAERAVFGKIRYMNYKGCLRKFNVAQFERKY 552

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BLAST of NO03G01620 vs. NCBI_GenBank
Match: XP_005752546.1 (PREDICTED: deoxyribodipyrimidine photo-lyase-like [Pundamilia nyererei])

HSP 1 Score: 488.4 bits (1256), Expect = 2.900e-134
Identity = 247/461 (53.58%), Postives = 313/461 (67.90%), Query Frame = 0

Query:   40 RMRVLTTTTPQASG-KSVLYWMVRDQRADDNYALLLARHLASQQNVPVAVCFNLTPPTPEDPLATLRAYGWMLKGLKEVEAALKAKNVPFFLLQGGTPSEMVPALASELQASSVITDFSPLREALVHAQAVATSLDRAGRPLLQVDAHNIVPVWQASPKLEVGARTIRKKIHDLLPTYFKPFPVEGLLPNDPAAVAGMPGRKPRDGGVEWEKVLAGLTIDRSVKEIDWLQPGAAAGWANLDGFIEKRLKIFAEKRNDPTEAAISHMSPYFNFGQVSVQAAMLKV-KGVKRYHDSVAAFVEEGVVRRELSDNFCFYQPKYDSLEGAAGWAQETLRVHAADERQYCYTPAQLEEGQTHDQLWNASQLQLVQEGKMHGFLRMYWAKKILEWTASPTAALAVALQLNDRYSIDGRDPNGFVGVGWSVMGVHDMGWTERKLVGKIRYMNYAGCLRKFDVEEFCARY 499
            R+R L+ T     G + VLYWM+RDQR  DN+AL+ A+ LA ++N+P+ VCF L  P  E  L+TLR Y +MLKGL+EV    +  NV F LL  G P +++P   S+    +V+TDFSP+RE L   + V   L +   P +QVDAHNIVP W ASPK E  ARTIR KI +LLP +   FP+    P+     A          GV+W+K LA L +DR+VKE +W +PG  AG   L+ FI+ RLK+F  +RNDP   A+S +SP+  FGQ+S Q    +V +  K    SV AF+EE VVRREL+DNFCFY  KYDS+EGA  WAQ+TL+ HA DER Y YT  QLE+ +THD+LWNA+Q Q+V EGKMHGFLRMYWAKKILEWT+SP  AL++AL LNDRY +DG+DPNGFVG  WS+ G+HD GW ER + GKIRYMNY GCLRKF+V +F  +Y
Sbjct:  105 RLRFLSDTEKIKQGSEGVLYWMLRDQRVQDNWALIHAQRLAVKENLPLHVCFCLVVPKSE--LSTLRHYSFMLKGLEEVAKECEQLNVQFHLLH-GAPGKVLPGFVSDHSFGAVVTDFSPIREPLQWLEDVKKKLSK-DIPFIQVDAHNIVPCWVASPKQEYSARTIRGKITNLLPEFLTDFPLVDSHPHTATRTA---------KGVDWDKTLASLDVDRNVKEPEWAKPGTKAGMDMLESFIDVRLKLFGSQRNDPNAPALSQLSPWLRFGQISAQRVAWQVQRNGKNASQSVPAFIEELVVRRELTDNFCFYNKKYDSVEGAYEWAQKTLKDHAKDERPYLYTREQLEKAKTHDKLWNAAQYQMVTEGKMHGFLRMYWAKKILEWTSSPEEALSIALYLNDRYELDGQDPNGFVGCMWSICGIHDQGWAERAVFGKIRYMNYKGCLRKFNVAQFERKY 552

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BLAST of NO03G01620 vs. NCBI_GenBank
Match: XP_015226846.1 (PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform X1 [Cyprinodon variegatus])

HSP 1 Score: 488.4 bits (1256), Expect = 2.900e-134
Identity = 258/508 (50.79%), Postives = 330/508 (64.96%), Query Frame = 0

Query:    6 DKKRSGSTEESAAAGSKKPKAGSSLAFPD-------------YFVPGRMRVLTTTTPQASG-KSVLYWMVRDQRADDNYALLLARHLASQQNVPVAVCFNLTPPTPEDPLATLRAYGWMLKGLKEVEAALKAKNVPFFLLQGGTPSEMVPALASELQASSVITDFSPLREALVHAQAVATSLDRAGRPLLQVDAHNIVPVWQASPKLEVGARTIRKKIHDLLPTYFKPFPVEGLLPNDPAAVAGMPGRKPRDGGVEWEKVLAGLTIDRSVKEIDWLQPGAAAGWANLDGFIEKRLKIFAEKRNDPTEAAISHMSPYFNFGQVSVQAAMLKVKGV-KRYHDSVAAFVEEGVVRRELSDNFCFYQPKYDSLEGAAGWAQETLRVHAADERQYCYTPAQLEEGQTHDQLWNASQLQLVQEGKMHGFLRMYWAKKILEWTASPTAALAVALQLNDRYSIDGRDPNGFVGVGWSVMGVHDMGWTERKLVGKIRYMNYAGCLRKFDVEEFCARY 499
            DKKR   +       +K+PK   +  + +              F   R R LT +     G + VLYWM+RDQR  DN+AL+ A+ LA+++ VP+ VC+ L  P  E  L+TLR Y ++LKGL++V  A K  N+ F LL  G P E++P   S+    +V+TDFSPLRE      AV   L +   PL+QVDAHNIVP W ASPKLE  ARTIR KI +LLP +   FP     P +  A       KP    V+WE+ L+ L +DR+V E +W +PG+ AG A L+ FI+ RLK+FA +RNDP  AA+S +SP+  FGQ+S Q   L+V+   K   +SVAAF+EE VVRREL+DNFC+Y  KYD +EGA  WAQ+TL+ HA D+R+Y YT  QLE  +THD+LWN +Q Q+V EGKMHGFLRMYWAKKILEWT SP  AL++AL LNDRY +DG+DPNGFVG  WS+ G+HD GW ER + GKIRYMNY GCLRKFDV  F  +Y
Sbjct:   45 DKKRKAPSAAEQGPSAKQPKEEKAAGWLESQVKQQREEKKDMKFNKKRQRFLTDSQKMKQGSEGVLYWMLRDQRVQDNWALIRAQQLAAKEEVPLHVCYCLLVPKSE--LSTLRHYAFLLKGLEQVAKACKKLNIQFHLLH-GAPGEVLPGFVSDQGFGAVVTDFSPLREPQQWLNAVKKKLSK-DIPLIQVDAHNIVPCWVASPKLEYSARTIRGKITNLLPEFLTDFP-----PVEKHAHTATRTAKP----VDWEQTLSSLDVDRTVGEPEWAKPGSKAGMAMLESFIDVRLKLFATQRNDPNMAALSQLSPWIRFGQLSAQRVALQVRRCGKNAGESVAAFIEELVVRRELTDNFCYYNEKYDQVEGAYEWAQKTLKDHAKDKREYIYTREQLENAKTHDKLWNGAQYQMVTEGKMHGFLRMYWAKKILEWTRSPEEALSIALYLNDRYELDGQDPNGFVGCMWSICGIHDQGWAERAVFGKIRYMNYKGCLRKFDVARFERKY 539

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BLAST of NO03G01620 vs. NCBI_GenBank
Match: XP_015226847.1 (PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform X2 [Cyprinodon variegatus])

HSP 1 Score: 488.4 bits (1256), Expect = 2.900e-134
Identity = 258/508 (50.79%), Postives = 330/508 (64.96%), Query Frame = 0

Query:    6 DKKRSGSTEESAAAGSKKPKAGSSLAFPD-------------YFVPGRMRVLTTTTPQASG-KSVLYWMVRDQRADDNYALLLARHLASQQNVPVAVCFNLTPPTPEDPLATLRAYGWMLKGLKEVEAALKAKNVPFFLLQGGTPSEMVPALASELQASSVITDFSPLREALVHAQAVATSLDRAGRPLLQVDAHNIVPVWQASPKLEVGARTIRKKIHDLLPTYFKPFPVEGLLPNDPAAVAGMPGRKPRDGGVEWEKVLAGLTIDRSVKEIDWLQPGAAAGWANLDGFIEKRLKIFAEKRNDPTEAAISHMSPYFNFGQVSVQAAMLKVKGV-KRYHDSVAAFVEEGVVRRELSDNFCFYQPKYDSLEGAAGWAQETLRVHAADERQYCYTPAQLEEGQTHDQLWNASQLQLVQEGKMHGFLRMYWAKKILEWTASPTAALAVALQLNDRYSIDGRDPNGFVGVGWSVMGVHDMGWTERKLVGKIRYMNYAGCLRKFDVEEFCARY 499
            DKKR   +       +K+PK   +  + +              F   R R LT +     G + VLYWM+RDQR  DN+AL+ A+ LA+++ VP+ VC+ L  P  E  L+TLR Y ++LKGL++V  A K  N+ F LL  G P E++P   S+    +V+TDFSPLRE      AV   L +   PL+QVDAHNIVP W ASPKLE  ARTIR KI +LLP +   FP     P +  A       KP    V+WE+ L+ L +DR+V E +W +PG+ AG A L+ FI+ RLK+FA +RNDP  AA+S +SP+  FGQ+S Q   L+V+   K   +SVAAF+EE VVRREL+DNFC+Y  KYD +EGA  WAQ+TL+ HA D+R+Y YT  QLE  +THD+LWN +Q Q+V EGKMHGFLRMYWAKKILEWT SP  AL++AL LNDRY +DG+DPNGFVG  WS+ G+HD GW ER + GKIRYMNY GCLRKFDV  F  +Y
Sbjct:    3 DKKRKAPSAAEQGPSAKQPKEEKAAGWLESQVKQQREEKKDMKFNKKRQRFLTDSQKMKQGSEGVLYWMLRDQRVQDNWALIRAQQLAAKEEVPLHVCYCLLVPKSE--LSTLRHYAFLLKGLEQVAKACKKLNIQFHLLH-GAPGEVLPGFVSDQGFGAVVTDFSPLREPQQWLNAVKKKLSK-DIPLIQVDAHNIVPCWVASPKLEYSARTIRGKITNLLPEFLTDFP-----PVEKHAHTATRTAKP----VDWEQTLSSLDVDRTVGEPEWAKPGSKAGMAMLESFIDVRLKLFATQRNDPNMAALSQLSPWIRFGQLSAQRVALQVRRCGKNAGESVAAFIEELVVRRELTDNFCYYNEKYDQVEGAYEWAQKTLKDHAKDKREYIYTREQLENAKTHDKLWNGAQYQMVTEGKMHGFLRMYWAKKILEWTRSPEEALSIALYLNDRYELDGQDPNGFVGCMWSICGIHDQGWAERAVFGKIRYMNYKGCLRKFDVARFERKY 497

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BLAST of NO03G01620 vs. NCBI_GenBank
Match: XP_005939131.1 (PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform X1 [Haplochromis burtoni])

HSP 1 Score: 487.6 bits (1254), Expect = 4.900e-134
Identity = 246/461 (53.36%), Postives = 313/461 (67.90%), Query Frame = 0

Query:   40 RMRVLTTTTPQASG-KSVLYWMVRDQRADDNYALLLARHLASQQNVPVAVCFNLTPPTPEDPLATLRAYGWMLKGLKEVEAALKAKNVPFFLLQGGTPSEMVPALASELQASSVITDFSPLREALVHAQAVATSLDRAGRPLLQVDAHNIVPVWQASPKLEVGARTIRKKIHDLLPTYFKPFPVEGLLPNDPAAVAGMPGRKPRDGGVEWEKVLAGLTIDRSVKEIDWLQPGAAAGWANLDGFIEKRLKIFAEKRNDPTEAAISHMSPYFNFGQVSVQAAMLKV-KGVKRYHDSVAAFVEEGVVRRELSDNFCFYQPKYDSLEGAAGWAQETLRVHAADERQYCYTPAQLEEGQTHDQLWNASQLQLVQEGKMHGFLRMYWAKKILEWTASPTAALAVALQLNDRYSIDGRDPNGFVGVGWSVMGVHDMGWTERKLVGKIRYMNYAGCLRKFDVEEFCARY 499
            R+R L+ T     G + VLYWM+RDQR  DN+AL+ A+ LA ++N+P+ VCF L  P  E  L+TLR Y +MLKGL+EV    +  NV F LL  G P +++P   S+    +V+TDFSP+RE L   + V   L +   P +QVDAHNIVP W ASPK E  ARTIR KI +LLP +   FP+    P+     A          GV+W+K LA L +DR+VKE +W +PG  AG   L+ FI+ RLK+F  +RNDP   A+S +SP+  FGQ+S Q    +V +  K    SV AF+EE VVRREL+DNFCFY  KYDS+EGA  WAQ+TL+ HA D+R Y YT  QLE+ +THD+LWNA+Q Q+V EGKMHGFLRMYWAKKILEWT+SP  AL++AL LNDRY +DG+DPNGFVG  WS+ G+HD GW ER + GKIRYMNY GCLRKF+V +F  +Y
Sbjct:  106 RLRFLSDTEKIKQGSEGVLYWMLRDQRVQDNWALIHAQRLAVKENLPLHVCFCLVVPKSE--LSTLRHYSFMLKGLEEVAKECEQLNVQFHLLH-GAPGKVLPGFVSDHSFGAVVTDFSPIREPLQWLEDVKKKLSK-DIPFIQVDAHNIVPCWVASPKQEYSARTIRGKITNLLPEFLTDFPLVDAHPHTATRTA---------KGVDWDKTLASLDVDRNVKEPEWAKPGTKAGMDMLESFIDVRLKLFGSQRNDPNAPALSQLSPWLRFGQISAQRVAWQVQRNGKNASQSVPAFIEELVVRRELTDNFCFYNKKYDSVEGAYEWAQKTLKDHAKDQRPYLYTREQLEKAKTHDKLWNAAQYQMVTEGKMHGFLRMYWAKKILEWTSSPEEALSIALYLNDRYELDGQDPNGFVGCMWSICGIHDQGWAERAVFGKIRYMNYKGCLRKFNVAQFERKY 553

The following BLAST results are available for this feature:

BLAST of NO03G01620 vs. NCBI_GenBank

BLAST of NO03G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM29541.1	6.400e-158	74.60	deoxyribodipyrimidine photo-lyase [Nannochloropsis...	[more]
CBN78764.1	3.200e-141	52.87	conserved unknown protein [Ectocarpus siliculosus]	[more]
XP_021171347.1	3.100e-136	54.88	deoxyribodipyrimidine photo-lyase-like [Fundulus h...	[more]
XP_015829836.1	1.200e-135	53.61	PREDICTED: deoxyribodipyrimidine photo-lyase-like ...	[more]
XP_001746666.1	2.600e-135	52.93	hypothetical protein [Monosiga brevicollis MX1] >E...	[more]
XP_004570537.1	2.200e-134	53.58	deoxyribodipyrimidine photo-lyase [Maylandia zebra...	[more]
XP_005752546.1	2.900e-134	53.58	PREDICTED: deoxyribodipyrimidine photo-lyase-like ...	[more]
XP_015226846.1	2.900e-134	50.79	PREDICTED: deoxyribodipyrimidine photo-lyase-like ...	[more]
XP_015226847.1	2.900e-134	50.79	PREDICTED: deoxyribodipyrimidine photo-lyase-like ...	[more]
XP_005939131.1	4.900e-134	53.36	PREDICTED: deoxyribodipyrimidine photo-lyase-like ...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL070	nonsL070	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR000	ncniR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR053	ngnoR053	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK005741	NSK005741	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO03G01620.2	NO03G01620.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO03G01620.1	NO03G01620.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571816	gene_1342	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100006g106	gene1023	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO03G01620.2	NO03G01620.2	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO03G01620.1	NO03G01620.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence
protein sequence

gene sequence

>NO03G01620 ID=NO03G01620|Name=NO03G01620|organism=Nannochloropsis oceanica|type=gene|length=2509bp
ACACAGCCACCACTACCCACAACCACAGCCACAACCACAGTCGTACCAGC
CGCAATCGCAGCTTTGTAGAAAGGCGCAACGATTGAGAGATCCACTTTCC
GCCGTCGCCACCTGGCCACCTGTGCTTTTATTTGCGCCATCCTGTCGTCG
TTCCTCCTTCTTCGTACGGCCGCCTTGTCGTCGTCCTCGTCGTCTTTTTT
CGCCCGACGAAGAAGTGCAGTCCTACCCAGCGCATATCTCTGTGCCTCGC
CATCCCTCTCGCCTTTTCGACGCAATTTTGTAACCATGAGCTGCAACGGC
GACAAGAAACGCAGCGGCAGCACTGAAGAGTCCGCCGCAGCCGGCAGCAA
GAAACCCAAAGCTGGAAGTAGCCTGGCCTTCCCCGACTACTTTGTCCCCG
GTCGTATGCGTGTCCTAACCACCACCACTCCACAAGCTAGTGGGAAAAGT
GTGCTCTACTGGATGGTACGCGACCAACGCGCGGACGACAATTACGCCCT
GCTTCTTGCCCGGCACCTGGCCAGCCAGCAAAACGTGCCCGTCGCCGTCT
GCTTCAACCTCACCCCTCCCACGCCCGAAGACCCATTGGCGACCTTGCGC
GCCTATGGTTGGATGCTCAAAGGCCTGAAAGAAGTGGAAGCAGCGCTTAA
AGCGAAAAACGTCCCCTTTTTTCTCTTGCAAGGCGGCACTCCTTCTGAGA
TGGTCCCCGCGCTCGCCTCCGAGCTCCAAGCCAGCAGCGTCATCACTGAC
TTCTCTCCCCTCCGCGAGGCCTTGGTACATGCCCAAGCTGTTGCCACTTC
ATTAGACAGAGCGGGGCGCCCACTTTTGCAGGTGGATGCACATAACATAG
TGCCTGTGTGGCAAGCTTCTCCAAAGCTCGAAGTTGGGGCCCGAACGATT
CGCAAAAAAATCCATGACCTCCTCCCTACCTATTTCAAGCCTTTTCCAGT
CGAGGGGTTGTTGCCAAATGATCCTGCGGCAGTAGCTGGGATGCCTGGGC
GGAAACCAAGGGATGGAGGTGTAGAGTGGGAGAAGGTGCTTGCAGGTCTG
ACGATTGACAGGAGTGTAAAAGAGATTGACTGGTTGCAGCCAGGCGCTGC
GGCGGGGTGGGCAAATTTAGATGGGTTTATTGAAAAGAGATTGAAGATAT
TTGCGGAGAAACGAAATGATCCGACAGAGGCGGCGATTAGCCATATGTCG
CCATATTTTAATTTTGGACAGGTGTCGGTGCAGGCGGCAATGCTGAAGGT
GAAGGGGGTGAAGAGATATCACGATTCAGTGGCGGCGTTTGTGGAGGAAG
GGGTAGTGAGAAGGGAGTTGTCAGATAACTTCTGTTTTTACCAGCCTAAA
TATGATTCCTTGGAGGGGGCGGCGGGATGGGCGCAGGAAACATTGAGGGT
TCATGCGGCTGACGAgtaagtgcttgtagggcttttttctccctccctgc
cggttgaccgtctcgtatgacatgtcttgaaggatcccttgttaccacca
tcgggctttcttgcccaacctttttcccctttagacctcctttctttcct
cggatatgcgtttcgactcaatcttctcatcgaagaaaaaaacatttcct
ccctccctgctttcatccatcctcccctccttcctccctcctctctcagA
CGCCAATACTGCTACACCCCCGCTCAATTGGAAGAGGGTCAAACTCACGA
CCAGCTCTGGAACGCCTCTCAACTCCAGCTTGTGCAAGAGGGGAAAATGC
ACGGATTCCTTCGCATGTACTGGGCCAAAAAAATCTTGGAATGGACGGCA
TCGCCGACAGCTGCCTTGGCGGTTGCGTTGCAGTTGAACGATCGTTATTC
AATTGATGGGAGAGATCCGAATGGCTTCGTGGGAGTGGGATGGTCGGTGA
TGGGCGTGCATGACATGGGCTGGACGGAACGGAAGCTGGTGGGGAAGATT
CGgtagggaaggggggacgggaggagggaagggatgcatcgatattgcat
aatgaagctctgatttttttcttgttctacctccctctcctctcccctta
gGTACATGAACTATGCGGGCTGCCTGCGAAAATTCGATGTGGAAGAATTT
TGCGCCCGGTACCCTGCTGCTATTGCTGCTGCTAGGAAGGTCCAAGCCGC
ACTGTCACCGCAGGGGGAAGGGCCAATCCCAATGAAGGCAGCAGCGGCGG
CGACCACGGGAGATGGAGTTGGAGAAGGAGGAAAGGGGGAGGCAAAGGGA
AAAGGGAAAACGAAGAAGTAATGTGGTAGAAATGTGGAGATGAGAAAGGG
AGGGGGAATGGCCTCAAAAGGCATGTAAGGGAAGAAGAGAAGAAAAGAAG
AGGGAAATGAATGAGCGTAGCGTGGAAAAGGTTTCAACACGCATGCATGA
GATCCCAAGACACACAAGTGCATGAACTTACACGACTATGTCGCAATCTG
ATGTTGAGAACGAGAACGCCCCAGAAGAAGAAAAGAATGAATGGAACAGA
CATACAAAC

protein sequence of NO03G01620.2

>NO03G01620.2-protein ID=NO03G01620.2-protein|Name=NO03G01620.2|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MSCNGDKKRSGSTEESAAAGSKKPKAGSSLAFPDYFVPGRMRVLTTTTPQ
ASGKSVLYWMVRDQRADDNYALLLARHLASQQNVPVAVCFNLTPPTPEDP
LATLRAYGWMLKGLKEVEAALKAKNVPFFLLQGGTPSEMVPALASELQAS
SVITDFSPLREALVHAQAVATSLDRAGRPLLQVDAHNIVPVWQASPKLEV
GARTIRKKIHDLLPTYFKPFPVEGLLPNDPAAVAGMPGRKPRDGGVEWEK
VLAGLTIDRSVKEIDWLQPGAAAGWANLDGFIEKRLKIFAEKRNDPTEAA
ISHMSPYFNFGQVSVQAAMLKVKGVKRYHDSVAAFVEEGVVRRELSDNFC
FYQPKYDSLEGAAGWAQETLRVHAADERQYCYTPAQLEEGQTHDQLWNAS
QLQLVQEGKMHGFLRMYWAKKILEWTASPTAALAVALQLNDRYSIDGRDP
NGFVGVGWSVMGVHDMGWTERKLVGKIR*

protein sequence of NO03G01620.1

>NO03G01620.1-protein ID=NO03G01620.1-protein|Name=NO03G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=551bp
MSCNGDKKRSGSTEESAAAGSKKPKAGSSLAFPDYFVPGRMRVLTTTTPQ
ASGKSVLYWMVRDQRADDNYALLLARHLASQQNVPVAVCFNLTPPTPEDP
LATLRAYGWMLKGLKEVEAALKAKNVPFFLLQGGTPSEMVPALASELQAS
SVITDFSPLREALVHAQAVATSLDRAGRPLLQVDAHNIVPVWQASPKLEV
GARTIRKKIHDLLPTYFKPFPVEGLLPNDPAAVAGMPGRKPRDGGVEWEK
VLAGLTIDRSVKEIDWLQPGAAAGWANLDGFIEKRLKIFAEKRNDPTEAA
ISHMSPYFNFGQVSVQAAMLKVKGVKRYHDSVAAFVEEGVVRRELSDNFC
FYQPKYDSLEGAAGWAQETLRVHAADERQYCYTPAQLEEGQTHDQLWNAS
QLQLVQEGKMHGFLRMYWAKKILEWTASPTAALAVALQLNDRYSIDGRDP
NGFVGVGWSVMGVHDMGWTERKLVGKIRYMNYAGCLRKFDVEEFCARYPA
AIAAARKVQAALSPQGEGPIPMKAAAAATTGDGVGEGGKGEAKGKGKTKK
*

Synonyms

Publications