NO03G01620.1, NO03G01620.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G01620.1
Unique Name	NO03G01620.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2176
Alignment location	chr3:512750..515258 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:512750..515258 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G01620.1 vs.
Match: EWM29541.1 (deoxyribodipyrimidine photo-lyase [Nannochloropsis gaditana])

HSP 1 Score: 567.0 bits (1460), Expect = 6.400e-158
Identity = 279/374 (74.60%), Postives = 310/374 (82.89%), Query Frame = 0

Query:    7 KKRSGSTEESAAAGSKKPKAG--SSLAFPDYFVPGRMRVLTT--TTPQASGKSVLYWMVRDQRADDNYALLLARHLASQQNVPVAVCFNLTPPTPEDPLATLRAYGWMLKGLKEVEAALKAKNVPFFLLQGGTPSEMVPALASELQASSVITDFSPLREALVHAQAVATSLDRAGRPLLQVDAHNIVPVWQASPKLEVGARTIRKKIHDLLPTYFKPFPVEGLLPNDPAAVAGMPGRKPRDGGVEWEKVLAGLTIDRSVKEIDWLQPGAAAGWANLDGFIEKRLKIFAEKRNDPTEAAISHMSPYFNFGQVSVQAAMLKVKGVKRYHDSVAAFVEEGVVRRELSDNFCFYQPKYDSLEGAAGWAQETLRVHAAD 377
            KKRSG+ +E     +KKPKAG  +S+  PD+F PGR+R LTT  T PQA+GK V+YWM RDQR +DN+A+LLARHLA+QQNVPV VCFNLTPP P DPLATLRAYGWML+GL+EVEAALK K++PF+LLQ G P +MVPAL SELQAS+VITDFSPLR  L  AQAVA +LD AGRPL QVDAHNIVPVWQASPKLEVGARTIRKKIHDLLP YF PFP EGL PND AAV  +PGR     G  +EKVL  L +D  VKEIDWLQPGA AGW NLD F+EK L+ FAEKRNDPTE AIS+MSPYFNFGQVSVQA MLKVK VKRYHDS+AAF+EEGVVRRELSDNFCFYQP+YDSL  AAGWAQE+LRVH  D
Sbjct:    5 KKRSGAIDEGTPGPTKKPKAGDSASIKLPDWFTPGRLRTLTTSCTKPQAAGKCVVYWMARDQRVEDNWAMLLARHLATQQNVPVVVCFNLTPPVPNDPLATLRAYGWMLRGLQEVEAALKRKHIPFYLLQEGPPEDMVPALVSELQASAVITDFSPLRGPLADAQAVAAALDAAGRPLFQVDAHNIVPVWQASPKLEVGARTIRKKIHDLLPKYFTPFPAEGLAPNDAAAVRALPGRSAPPEGFGYEKVLGRLHLDSGVKEIDWLQPGARAGWENLDTFLEKGLRFFAEKRNDPTEPAISNMSPYFNFGQVSVQAVMLKVKAVKRYHDSIAAFIEEGVVRRELSDNFCFYQPEYDSLAAAAGWAQESLRVHTND 378

The following BLAST results are available for this feature:

BLAST of NO03G01620.1 vs.

BLAST of NO03G01620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29541.1	6.400e-158	74.60	deoxyribodipyrimidine photo-lyase [Nannochloropsis...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G01620	NO03G01620	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G01620.1	NO03G01620.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G01620.1.cds1	NO03G01620.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G01620.1.cds2	NO03G01620.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G01620.1.cds3	NO03G01620.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:512750..515258-
coding sequence from alignment at chr3:512750..515258-

mRNA sequence

>NO03G01620.1 ID=NO03G01620.1|Name=NO03G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2176bp
ACACAGCCACCACTACCCACAACCACAGCCACAACCACAGTCGTACCAGC
CGCAATCGCAGCTTTGTAGAAAGGCGCAACGATTGAGAGATCCACTTTCC
GCCGTCGCCACCTGGCCACCTGTGCTTTTATTTGCGCCATCCTGTCGTCG
TTCCTCCTTCTTCGTACGGCCGCCTTGTCGTCGTCCTCGTCGTCTTTTTT
CGCCCGACGAAGAAGTGCAGTCCTACCCAGCGCATATCTCTGTGCCTCGC
CATCCCTCTCGCCTTTTCGACGCAATTTTGTAACCATGAGCTGCAACGGC
GACAAGAAACGCAGCGGCAGCACTGAAGAGTCCGCCGCAGCCGGCAGCAA
GAAACCCAAAGCTGGAAGTAGCCTGGCCTTCCCCGACTACTTTGTCCCCG
GTCGTATGCGTGTCCTAACCACCACCACTCCACAAGCTAGTGGGAAAAGT
GTGCTCTACTGGATGGTACGCGACCAACGCGCGGACGACAATTACGCCCT
GCTTCTTGCCCGGCACCTGGCCAGCCAGCAAAACGTGCCCGTCGCCGTCT
GCTTCAACCTCACCCCTCCCACGCCCGAAGACCCATTGGCGACCTTGCGC
GCCTATGGTTGGATGCTCAAAGGCCTGAAAGAAGTGGAAGCAGCGCTTAA
AGCGAAAAACGTCCCCTTTTTTCTCTTGCAAGGCGGCACTCCTTCTGAGA
TGGTCCCCGCGCTCGCCTCCGAGCTCCAAGCCAGCAGCGTCATCACTGAC
TTCTCTCCCCTCCGCGAGGCCTTGGTACATGCCCAAGCTGTTGCCACTTC
ATTAGACAGAGCGGGGCGCCCACTTTTGCAGGTGGATGCACATAACATAG
TGCCTGTGTGGCAAGCTTCTCCAAAGCTCGAAGTTGGGGCCCGAACGATT
CGCAAAAAAATCCATGACCTCCTCCCTACCTATTTCAAGCCTTTTCCAGT
CGAGGGGTTGTTGCCAAATGATCCTGCGGCAGTAGCTGGGATGCCTGGGC
GGAAACCAAGGGATGGAGGTGTAGAGTGGGAGAAGGTGCTTGCAGGTCTG
ACGATTGACAGGAGTGTAAAAGAGATTGACTGGTTGCAGCCAGGCGCTGC
GGCGGGGTGGGCAAATTTAGATGGGTTTATTGAAAAGAGATTGAAGATAT
TTGCGGAGAAACGAAATGATCCGACAGAGGCGGCGATTAGCCATATGTCG
CCATATTTTAATTTTGGACAGGTGTCGGTGCAGGCGGCAATGCTGAAGGT
GAAGGGGGTGAAGAGATATCACGATTCAGTGGCGGCGTTTGTGGAGGAAG
GGGTAGTGAGAAGGGAGTTGTCAGATAACTTCTGTTTTTACCAGCCTAAA
TATGATTCCTTGGAGGGGGCGGCGGGATGGGCGCAGGAAACATTGAGGGT
TCATGCGGCTGACGAACGCCAATACTGCTACACCCCCGCTCAATTGGAAG
AGGGTCAAACTCACGACCAGCTCTGGAACGCCTCTCAACTCCAGCTTGTG
CAAGAGGGGAAAATGCACGGATTCCTTCGCATGTACTGGGCCAAAAAAAT
CTTGGAATGGACGGCATCGCCGACAGCTGCCTTGGCGGTTGCGTTGCAGT
TGAACGATCGTTATTCAATTGATGGGAGAGATCCGAATGGCTTCGTGGGA
GTGGGATGGTCGGTGATGGGCGTGCATGACATGGGCTGGACGGAACGGAA
GCTGGTGGGGAAGATTCGGTACATGAACTATGCGGGCTGCCTGCGAAAAT
TCGATGTGGAAGAATTTTGCGCCCGGTACCCTGCTGCTATTGCTGCTGCT
AGGAAGGTCCAAGCCGCACTGTCACCGCAGGGGGAAGGGCCAATCCCAAT
GAAGGCAGCAGCGGCGGCGACCACGGGAGATGGAGTTGGAGAAGGAGGAA
AGGGGGAGGCAAAGGGAAAAGGGAAAACGAAGAAGTAATGTGGTAGAAAT
GTGGAGATGAGAAAGGGAGGGGGAATGGCCTCAAAAGGCATGTAAGGGAA
GAAGAGAAGAAAAGAAGAGGGAAATGAATGAGCGTAGCGTGGAAAAGGTT
TCAACACGCATGCATGAGATCCCAAGACACACAAGTGCATGAACTTACAC
GACTATGTCGCAATCTGATGTTGAGAACGAGAACGCCCCAGAAGAAGAAA
AGAATGAATGGAACAGACATACAAAC

protein sequence of NO03G01620.1

>NO03G01620.1-protein ID=NO03G01620.1-protein|Name=NO03G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=551bp
MSCNGDKKRSGSTEESAAAGSKKPKAGSSLAFPDYFVPGRMRVLTTTTPQ
ASGKSVLYWMVRDQRADDNYALLLARHLASQQNVPVAVCFNLTPPTPEDP
LATLRAYGWMLKGLKEVEAALKAKNVPFFLLQGGTPSEMVPALASELQAS
SVITDFSPLREALVHAQAVATSLDRAGRPLLQVDAHNIVPVWQASPKLEV
GARTIRKKIHDLLPTYFKPFPVEGLLPNDPAAVAGMPGRKPRDGGVEWEK
VLAGLTIDRSVKEIDWLQPGAAAGWANLDGFIEKRLKIFAEKRNDPTEAA
ISHMSPYFNFGQVSVQAAMLKVKGVKRYHDSVAAFVEEGVVRRELSDNFC
FYQPKYDSLEGAAGWAQETLRVHAADERQYCYTPAQLEEGQTHDQLWNAS
QLQLVQEGKMHGFLRMYWAKKILEWTASPTAALAVALQLNDRYSIDGRDP
NGFVGVGWSVMGVHDMGWTERKLVGKIRYMNYAGCLRKFDVEEFCARYPA
AIAAARKVQAALSPQGEGPIPMKAAAAATTGDGVGEGGKGEAKGKGKTKK
*

mRNA from alignment at chr3:512750..515258-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G01620.1 ID=NO03G01620.1|Name=NO03G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2509bp|location=Sequence derived from alignment at chr3:512750..515258- (Nannochloropsis oceanica)
ACACAGCCACCACTACCCACAACCACAGCCACAACCACAGTCGTACCAGC
CGCAATCGCAGCTTTGTAGAAAGGCGCAACGATTGAGAGATCCACTTTCC
GCCGTCGCCACCTGGCCACCTGTGCTTTTATTTGCGCCATCCTGTCGTCG
TTCCTCCTTCTTCGTACGGCCGCCTTGTCGTCGTCCTCGTCGTCTTTTTT
CGCCCGACGAAGAAGTGCAGTCCTACCCAGCGCATATCTCTGTGCCTCGC
CATCCCTCTCGCCTTTTCGACGCAATTTTGTAACCATGAGCTGCAACGGC
GACAAGAAACGCAGCGGCAGCACTGAAGAGTCCGCCGCAGCCGGCAGCAA
GAAACCCAAAGCTGGAAGTAGCCTGGCCTTCCCCGACTACTTTGTCCCCG
GTCGTATGCGTGTCCTAACCACCACCACTCCACAAGCTAGTGGGAAAAGT
GTGCTCTACTGGATGGTACGCGACCAACGCGCGGACGACAATTACGCCCT
GCTTCTTGCCCGGCACCTGGCCAGCCAGCAAAACGTGCCCGTCGCCGTCT
GCTTCAACCTCACCCCTCCCACGCCCGAAGACCCATTGGCGACCTTGCGC
GCCTATGGTTGGATGCTCAAAGGCCTGAAAGAAGTGGAAGCAGCGCTTAA
AGCGAAAAACGTCCCCTTTTTTCTCTTGCAAGGCGGCACTCCTTCTGAGA
TGGTCCCCGCGCTCGCCTCCGAGCTCCAAGCCAGCAGCGTCATCACTGAC
TTCTCTCCCCTCCGCGAGGCCTTGGTACATGCCCAAGCTGTTGCCACTTC
ATTAGACAGAGCGGGGCGCCCACTTTTGCAGGTGGATGCACATAACATAG
TGCCTGTGTGGCAAGCTTCTCCAAAGCTCGAAGTTGGGGCCCGAACGATT
CGCAAAAAAATCCATGACCTCCTCCCTACCTATTTCAAGCCTTTTCCAGT
CGAGGGGTTGTTGCCAAATGATCCTGCGGCAGTAGCTGGGATGCCTGGGC
GGAAACCAAGGGATGGAGGTGTAGAGTGGGAGAAGGTGCTTGCAGGTCTG
ACGATTGACAGGAGTGTAAAAGAGATTGACTGGTTGCAGCCAGGCGCTGC
GGCGGGGTGGGCAAATTTAGATGGGTTTATTGAAAAGAGATTGAAGATAT
TTGCGGAGAAACGAAATGATCCGACAGAGGCGGCGATTAGCCATATGTCG
CCATATTTTAATTTTGGACAGGTGTCGGTGCAGGCGGCAATGCTGAAGGT
GAAGGGGGTGAAGAGATATCACGATTCAGTGGCGGCGTTTGTGGAGGAAG
GGGTAGTGAGAAGGGAGTTGTCAGATAACTTCTGTTTTTACCAGCCTAAA
TATGATTCCTTGGAGGGGGCGGCGGGATGGGCGCAGGAAACATTGAGGGT
TCATGCGGCTGACGAGTAAGTGCTTGTAGGGCTTTTTTCTCCCTCCCTGC
CGGTTGACCGTCTCGTATGACATGTCTTGAAGGATCCCTTGTTACCACCA
TCGGGCTTTCTTGCCCAACCTTTTTCCCCTTTAGACCTCCTTTCTTTCCT
CGGATATGCGTTTCGACTCAATCTTCTCATCGAAGAAAAAAACATTTCCT
CCCTCCCTGCTTTCATCCATCCTCCCCTCCTTCCTCCCTCCTCTCTCAGA
CGCCAATACTGCTACACCCCCGCTCAATTGGAAGAGGGTCAAACTCACGA
CCAGCTCTGGAACGCCTCTCAACTCCAGCTTGTGCAAGAGGGGAAAATGC
ACGGATTCCTTCGCATGTACTGGGCCAAAAAAATCTTGGAATGGACGGCA
TCGCCGACAGCTGCCTTGGCGGTTGCGTTGCAGTTGAACGATCGTTATTC
AATTGATGGGAGAGATCCGAATGGCTTCGTGGGAGTGGGATGGTCGGTGA
TGGGCGTGCATGACATGGGCTGGACGGAACGGAAGCTGGTGGGGAAGATT
CGGTAGGGAAGGGGGGACGGGAGGAGGGAAGGGATGCATCGATATTGCAT
AATGAAGCTCTGATTTTTTTCTTGTTCTACCTCCCTCTCCTCTCCCCTTA
GGTACATGAACTATGCGGGCTGCCTGCGAAAATTCGATGTGGAAGAATTT
TGCGCCCGGTACCCTGCTGCTATTGCTGCTGCTAGGAAGGTCCAAGCCGC
ACTGTCACCGCAGGGGGAAGGGCCAATCCCAATGAAGGCAGCAGCGGCGG
CGACCACGGGAGATGGAGTTGGAGAAGGAGGAAAGGGGGAGGCAAAGGGA
AAAGGGAAAACGAAGAAGTAATGTGGTAGAAATGTGGAGATGAGAAAGGG
AGGGGGAATGGCCTCAAAAGGCATGTAAGGGAAGAAGAGAAGAAAAGAAG
AGGGAAATGAATGAGCGTAGCGTGGAAAAGGTTTCAACACGCATGCATGA
GATCCCAAGACACACAAGTGCATGAACTTACACGACTATGTCGCAATCTG
ATGTTGAGAACGAGAACGCCCCAGAAGAAGAAAAGAATGAATGGAACAGA
CATACAAAC

Coding sequence (CDS) from alignment at chr3:512750..515258-

>NO03G01620.1 ID=NO03G01620.1|Name=NO03G01620.1|organism=Nannochloropsis oceanica|type=CDS|length=1653bp|location=Sequence derived from alignment at chr3:512750..515258- (Nannochloropsis oceanica)
ATGAGCTGCAACGGCGACAAGAAACGCAGCGGCAGCACTGAAGAGTCCGC
CGCAGCCGGCAGCAAGAAACCCAAAGCTGGAAGTAGCCTGGCCTTCCCCG
ACTACTTTGTCCCCGGTCGTATGCGTGTCCTAACCACCACCACTCCACAA
GCTAGTGGGAAAAGTGTGCTCTACTGGATGGTACGCGACCAACGCGCGGA
CGACAATTACGCCCTGCTTCTTGCCCGGCACCTGGCCAGCCAGCAAAACG
TGCCCGTCGCCGTCTGCTTCAACCTCACCCCTCCCACGCCCGAAGACCCA
TTGGCGACCTTGCGCGCCTATGGTTGGATGCTCAAAGGCCTGAAAGAAGT
GGAAGCAGCGCTTAAAGCGAAAAACGTCCCCTTTTTTCTCTTGCAAGGCG
GCACTCCTTCTGAGATGGTCCCCGCGCTCGCCTCCGAGCTCCAAGCCAGC
AGCGTCATCACTGACTTCTCTCCCCTCCGCGAGGCCTTGGTACATGCCCA
AGCTGTTGCCACTTCATTAGACAGAGCGGGGCGCCCACTTTTGCAGGTGG
ATGCACATAACATAGTGCCTGTGTGGCAAGCTTCTCCAAAGCTCGAAGTT
GGGGCCCGAACGATTCGCAAAAAAATCCATGACCTCCTCCCTACCTATTT
CAAGCCTTTTCCAGTCGAGGGGTTGTTGCCAAATGATCCTGCGGCAGTAG
CTGGGATGCCTGGGCGGAAACCAAGGGATGGAGGTGTAGAGTGGGAGAAG
GTGCTTGCAGGTCTGACGATTGACAGGAGTGTAAAAGAGATTGACTGGTT
GCAGCCAGGCGCTGCGGCGGGGTGGGCAAATTTAGATGGGTTTATTGAAA
AGAGATTGAAGATATTTGCGGAGAAACGAAATGATCCGACAGAGGCGGCG
ATTAGCCATATGTCGCCATATTTTAATTTTGGACAGGTGTCGGTGCAGGC
GGCAATGCTGAAGGTGAAGGGGGTGAAGAGATATCACGATTCAGTGGCGG
CGTTTGTGGAGGAAGGGGTAGTGAGAAGGGAGTTGTCAGATAACTTCTGT
TTTTACCAGCCTAAATATGATTCCTTGGAGGGGGCGGCGGGATGGGCGCA
GGAAACATTGAGGGTTCATGCGGCTGACGAACGCCAATACTGCTACACCC
CCGCTCAATTGGAAGAGGGTCAAACTCACGACCAGCTCTGGAACGCCTCT
CAACTCCAGCTTGTGCAAGAGGGGAAAATGCACGGATTCCTTCGCATGTA
CTGGGCCAAAAAAATCTTGGAATGGACGGCATCGCCGACAGCTGCCTTGG
CGGTTGCGTTGCAGTTGAACGATCGTTATTCAATTGATGGGAGAGATCCG
AATGGCTTCGTGGGAGTGGGATGGTCGGTGATGGGCGTGCATGACATGGG
CTGGACGGAACGGAAGCTGGTGGGGAAGATTCGGTACATGAACTATGCGG
GCTGCCTGCGAAAATTCGATGTGGAAGAATTTTGCGCCCGGTACCCTGCT
GCTATTGCTGCTGCTAGGAAGGTCCAAGCCGCACTGTCACCGCAGGGGGA
AGGGCCAATCCCAATGAAGGCAGCAGCGGCGGCGACCACGGGAGATGGAG
TTGGAGAAGGAGGAAAGGGGGAGGCAAAGGGAAAAGGGAAAACGAAGAAG
TAA

Synonyms

Publications