NO03G01210, NO03G01210 (gene) Nannochloropsis oceanica

Overview
NameNO03G01210
Unique NameNO03G01210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2963
Alignment locationchr3:373234..376196 +

Link to JBrowse

Properties
Property NameValue
DescriptionLeucine rich repeat protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:373234..376196 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR001611Leu-rich_rpt
IPR003591Leu-rich_rpt_typical-subtyp
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Homology
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BLAST of NO03G01210 vs. NCBI_GenBank
Match: EWM29554.1 (leucine rich repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 135.2 bits (339), Expect = 3.300e-28
Identity = 66/94 (70.21%), Postives = 78/94 (82.98%), Query Frame = 0 
Query:    1 MTSVDTWMAYFRVQSRLEQLRAKNVRSRRRRRALFAQLRVSTGLKILSLVNVQHPCTSVLFRQVSGMHGLQELDLSANGLKGPLPPSIGDDLPL 95
            MT+VD W+AYFRVQ RLE +R +N+  +R+RRALF+QLR +TGLK LSLVNV HPCT VLF+QVS MHGLQELDLS+NGLKGPLP  +   LPL
Sbjct:   31 MTNVDAWLAYFRVQGRLESIRVENMAGKRKRRALFSQLRATTGLKTLSLVNVPHPCTGVLFQQVSCMHGLQELDLSSNGLKGPLPRWLSKHLPL 124
The following BLAST results are available for this feature:
BLAST of NO03G01210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29554.13.300e-2870.21leucine rich repeat protein [Nannochloropsis gadit... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005792NSK005792Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01210.1NO03G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G01210.2NO03G01210.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571642gene_1295Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Cf-5gene1071Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01210.1NO03G01210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G01210.2NO03G01210.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01210 ID=NO03G01210|Name=NO03G01210|organism=Nannochloropsis oceanica|type=gene|length=2963bp
GTCCAAGGTGAGAACTCGTGAGACAACGACCACCACAGCTCTTTCCCAAA
ATGTGACATGGGTTTATCAACATATGTAGAGCAAACAAAAAAGCTAATAA
TGTTAATTGTTTCCGATAAATGTTTCCCACACACCGTCTGTGAAGAGCAT
TCTGCGTTGTTTTGAGCAAAAGGGCGGGGAGGAGGAGTCCCGCCCTCCTT
CAAGTTGCTCGCTCGTGCAAAATTTGTCGCGACACGAAAGGAATGTCGTC
ATTTTCTACTGGAATGACCGCGAGTGGCCTAGGTGACAGTGTGTCACTTA
GAGTAAAGCATGTACTGATCGGACAACGACCAAGTAAGGTTACCTGCATG
ACCTCCCCACGTGACAACCTTCCCCCAGTCCAAAACGATGCACCCCAGCC
GCAGGTCGCACGCACCAGCGCAGCATCAATTAGGAGGTCCAGGCAGGGGA
CATGCACGACCGCAAGGACTTCAACTGCTCTTGTGCTTCCCACTCAGCCT
TGTTGTAAAACATGTCTCATTCCCCACCCCACCACCACAGCACCATGAAT
AGGCCGGCGACATTCCGCATGCTGCCGCCCGAGTGCTACGACCATATTGT
GGGATTCCTGCGCTACAAAGATGTAAGTACTCACCAAGACGTTGTAATAG
GATTGCCAGGACAGCGAACGAGTGACGGAGGGCGGGGTCGTGACAAAGAC
CATTCCATGCAACTGTCTCCCCCCTTGCGCGGGAGCCACGTGTATTTGTG
ACTCACCTCGGTATTAACGTGGGTCCCCTTCCCGCAGTGCCAGTCGATCC
CTTAGTTCTTGTCGGACGCCGCTTTCGGGGGAAGGACCACTCCCTCCCTT
TACTGATATGTAGACGTGCTAGAAGCCCTCCTTTCCTCACCACAACTCTT
CTTCTCATATCCCCTTGGGCGCATGCCACTGACCCGTCCCACCGTTATCC
TCTTCGGGGCGCAGACCACTTGAGTTGTATCGTTCCATAGGCGACGTGCC
TTTCGAAAGAGCGGCCTTCCTTCGCCGTTTGTCGCTGCTCCCTTCCCGAC
ACTCTCAGACCCTCTCAGACCCTCTTTTCCCCCCTCCCTCACTTCCCTCC
CTCCATCTCTACTCTCCACCTCCCAAACAGCTCGTCCGCGTCTCCATGAC
AAGCGTGGACACTTGGATGGCCTACTTCCGGGTGCAGAGCCGTTTGGAAC
AATTACGGGCCAAGAATGTGAGAAGTCGGAGACGGCGTCGCGCGCTGTTT
GCCCAGCTCCGGGTATCCACGGGATTGAAAATTTTGAGCCTTGTTAATGT
CCAGCATCCCTGCACAAgtacgtttgaatgcttgaaaatagtgaggaagg
agggaagaagggaatttacacagaagtaagaaagaaaagctccacttatc
ttcccccttccctctaccccccccccctccctcttccaattagGTGTCCT
ATTCCGGCAGGTCAGCGGTATGCATGGTCTTCAAGAACTCGACCTCTCTG
CCAACGGGCTCAAGGGCCCTCTCCCCCCCTCCATCGGTGACGACCTGCCC
CTCCTCCGTGTCCTCTCCCTCAGCAATAACGGGCTTACGGGCACCTTGCC
ACCGGGATGGGGCAAGCTCCACCGTCTCGAGGACCTCAAATTATCGTTCA
ATTCCTTACAAGGCAGCATCCCCGACTCCTGGGCCGGCATGATCTCCCTC
CGGCACATCTCCCTCTCCTACAACCAACTCTCCGGGCCCGTCCCCTCCTT
CTTCTCCACCCTCCGCGACCTTGAGACCCTGCTGTTGGGAGGGAACCGCT
TTACTGGCGTTCTCCCTCCGTCTCTGGGGGCATTAAGTCACATCAATTCC
CTCTACCTCTTCCAAAACGAACTCGAAGGCCCCATCCCTGACTCTCTCGG
CTCGTGCGTCGCCCTCCAAAAGCTGCTGTTGTCTCACAACAAGCTCACGG
GGAAGCTTCCTTCCTCCCTGGGTCGCCTCGAGAGCCTGAAAGAATTGAGT
GTGAGTGGGAACGAGCTCGAGGGAGAGCTACCGCACGCGTTGGAAAAACT
GGAGAAACTGCAGACGCTTGATTTGGCCGATAATCGATTTGCGGCCGATG
CACCAAGGAGCCGGCAGGTGATCCGGGTCATGCGGACGAGGGATTGTCAG
ATTTATATGTAGGAAGGGGAGGGAAGGAGGGCGGGAAAAGGGGAATAGGA
GGGGGTTTGAAGAGGAAAGGAAGTAGATACAGTGGGTGGATTATAGAGAG
AAAGAAAAAGAGAGAGAGAAAGAAAGATAGAAAGAAAGAGAAGAAATGTA
CATAGAGGAGAGAGACAAAGGCAGAGAGTAAGAAAGAATAAGGGAAAGAG
GGACAGAGAGGGACGGAGCGTTAGAGACGAGAGAGCGACACAGAGAAGAG
GGGAAAACGAGAGAGCAGTCAATTTTGAATTTAAGTGTTTCAATATGTGC
CGGGTCAACGAAACCGGTTGGGTAAAGATTCTCACTCAAGTTCGTCCTTA
AAAGAAGAAAAGAATAAAGAAGGAGGCGGCTGCGTGCCTCCATCCCTGAG
TTTTGACAGCAGCGGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGAAGAAGAAGAAGAAGAGTAAGAAGGGACGGAATTTACAACAGA
CGAATAAGCAGTAAGACTAAACTTTCGTTGGAATTCCTCTGGCTCAAGGC
AGCTTGGAGATGCGTTGGGAGACACGCGCGGGTAGAGCCTAAGGCGAGTA
GAGCCCGAGGACGACTTTCATTCAGTTTTGATGTGAATTAGTGAAAGATT
GACAGTAGAAAGAGGAAAAAAACAGAAAGGAGATGTGGAAGACGAAGGCA
ATAAAGACGGTTGAAAAGAAAAACCGGTAGTTGAAGGGGGAGAACAAAGA
ATGCGATACAAGGGAGTGAAGTGAGAGAATTAGTCCATTAAGTAATTTAT
GCATACAGTGATA
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protein sequence of NO03G01210.1

>NO03G01210.1-protein ID=NO03G01210.1-protein|Name=NO03G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MSHSPPHHHSTMNRPATFRMLPPECYDHIVGFLRYKDLVRVSMTSVDTWM
AYFRVQSRLEQLRAKNVRSRRRRRALFAQLRVSTGLKILSLVNVQHPCTS
VLFRQVSGMHGLQELDLSANGLKGPLPPSIGDDLPLLRVLSLSNNGLTGT
LPPGWGKLHRLEDLKLSFNSLQGSIPDSWAGMISLRHISLSYNQLSGPVP
SFFSTLRDLETLLLGGNRFTGVLPPSLGALSHINSLYLFQNELEGPIPDS
LGSCVALQKLLLSHNKLTGKLPSSLGRLESLKELSVSGNELEGELPHALE
KLEKLQTLDLADNRFAADAPRSRQVIRVMRTRDCQIYM*
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protein sequence of NO03G01210.2

>NO03G01210.2-protein ID=NO03G01210.2-protein|Name=NO03G01210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MTSVDTWMAYFRVQSRLEQLRAKNVRSRRRRRALFAQLRVSTGLKILSLV
NVQHPCTSVLFRQVSGMHGLQELDLSANGLKGPLPPSIGDDLPLLRVLSL
SNNGLTGTLPPGWGKLHRLEDLKLSFNSLQGSIPDSWAGMISLRHISLSY
NQLSGPVPSFFSTLRDLETLLLGGNRFTGVLPPSLGALSHINSLYLFQNE
LEGPIPDSLGSCVALQKLLLSHNKLTGKLPSSLGRLESLKELSVSGNELE
GELPHALEKLEKLQTLDLADNRFAADAPRSRQVIRVMRTRDCQIYM*
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Synonyms
Publications