NO03G01210.1, NO03G01210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01210.1
Unique NameNO03G01210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2329
Alignment locationchr3:373234..376196 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:373234..376196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01210.1 vs.
Match: EWM29554.1 (leucine rich repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 471.9 bits (1213), Expect = 1.700e-129
Identity = 233/324 (71.91%), Postives = 271/324 (83.64%), Query Frame = 0 
Query:   15 PATFRMLPPECYDHIVGFLRYKDLVRVSMTSVDTWMAYFRVQSRLEQLRAKNVRSRRRRRALFAQLRVSTGLKILSLVNVQHPCTSVLFRQVSGMHGLQELDLSANGLKGPLPPSIGDDLPLLRVLSLSNNGLTGTLPPGWGKLHRLEDLKLSFNSLQGSIPDSWAGMISLRHISLSYNQLSGPVPSFFSTLRDLETLLLGGNRFTGVLPPSLGALSHINSLYLFQNELEGPIPDSLGSCVALQKLLLSHNKLTGKLPSSLGRLESLKELSVSGNELEGELPHALEKLEKLQTLDLADNRFAADAPRSRQVIRVMRTRDCQIYM 339
            PATF +LP EC+D I+ FLRYKDLVRVSMT+VD W+AYFRVQ RLE +R +N+  +R+RRALF+QLR +TGLK LSLVNV HPCT VLF+QVS MHGLQELDLS+NGLKGPLP  +   LPLLR LSLSNN L+G+LP  WG   RLEDLKLSFN L+G++P++WAGM SLR +SLSYNQLSGPVPSFFS+L  LE L+LGGN+F G LP SLGALSHI++LYLFQNELEGPIP++LGSC+ALQ LLLSHN+ TG LP  LG L  L+ELSVS N+LEGELP+ L+KLE L  LDLADNRFAADAPRSR V+  MR RDCQ+YM
Sbjct:    3 PATFSLLPAECHDQILSFLRYKDLVRVSMTNVDAWLAYFRVQGRLESIRVENMAGKRKRRALFSQLRATTGLKTLSLVNVPHPCTGVLFQQVSCMHGLQELDLSSNGLKGPLPRWLSKHLPLLRRLSLSNNQLSGSLPVEWGAFSRLEDLKLSFNRLEGNVPETWAGMRSLRLLSLSYNQLSGPVPSFFSSLPALEALMLGGNKFNGSLPASLGALSHIHALYLFQNELEGPIPEALGSCLALQILLLSHNRFTGPLPPFLGGLRQLEELSVSANKLEGELPYDLKKLEHLHVLDLADNRFAADAPRSRNVLEAMRLRDCQVYM 326
The following BLAST results are available for this feature:
BLAST of NO03G01210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29554.11.700e-12971.91leucine rich repeat protein [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01210NO03G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01210.1NO03G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01210.1.cds1NO03G01210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01210.1.cds2NO03G01210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01210.1.cds3NO03G01210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01210.1 ID=NO03G01210.1|Name=NO03G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2329bp
GTCCAAGGTGAGAACTCGTGAGACAACGACCACCACAGCTCTTTCCCAAA
ATGTGACATGGGTTTATCAACATATGTAGAGCAAACAAAAAAGCTAATAA
TGTTAATTGTTTCCGATAAATGTTTCCCACACACCGTCTGTGAAGAGCAT
TCTGCGTTGTTTTGAGCAAAAGGGCGGGGAGGAGGAGTCCCGCCCTCCTT
CAAGTTGCTCGCTCGTGCAAAATTTGTCGCGACACGAAAGGAATGTCGTC
ATTTTCTACTGGAATGACCGCGAGTGGCCTAGGTGACAGTGTGTCACTTA
GAGTAAAGCATGTACTGATCGGACAACGACCAAGTAAGGTTACCTGCATG
ACCTCCCCACGTGACAACCTTCCCCCAGTCCAAAACGATGCACCCCAGCC
GCAGGTCGCACGCACCAGCGCAGCATCAATTAGGAGGTCCAGGCAGGGGA
CATGCACGACCGCAAGGACTTCAACTGCTCTTGTGCTTCCCACTCAGCCT
TGTTGTAAAACATGTCTCATTCCCCACCCCACCACCACAGCACCATGAAT
AGGCCGGCGACATTCCGCATGCTGCCGCCCGAGTGCTACGACCATATTGT
GGGATTCCTGCGCTACAAAGATCTCGTCCGCGTCTCCATGACAAGCGTGG
ACACTTGGATGGCCTACTTCCGGGTGCAGAGCCGTTTGGAACAATTACGG
GCCAAGAATGTGAGAAGTCGGAGACGGCGTCGCGCGCTGTTTGCCCAGCT
CCGGGTATCCACGGGATTGAAAATTTTGAGCCTTGTTAATGTCCAGCATC
CCTGCACAAGTGTCCTATTCCGGCAGGTCAGCGGTATGCATGGTCTTCAA
GAACTCGACCTCTCTGCCAACGGGCTCAAGGGCCCTCTCCCCCCCTCCAT
CGGTGACGACCTGCCCCTCCTCCGTGTCCTCTCCCTCAGCAATAACGGGC
TTACGGGCACCTTGCCACCGGGATGGGGCAAGCTCCACCGTCTCGAGGAC
CTCAAATTATCGTTCAATTCCTTACAAGGCAGCATCCCCGACTCCTGGGC
CGGCATGATCTCCCTCCGGCACATCTCCCTCTCCTACAACCAACTCTCCG
GGCCCGTCCCCTCCTTCTTCTCCACCCTCCGCGACCTTGAGACCCTGCTG
TTGGGAGGGAACCGCTTTACTGGCGTTCTCCCTCCGTCTCTGGGGGCATT
AAGTCACATCAATTCCCTCTACCTCTTCCAAAACGAACTCGAAGGCCCCA
TCCCTGACTCTCTCGGCTCGTGCGTCGCCCTCCAAAAGCTGCTGTTGTCT
CACAACAAGCTCACGGGGAAGCTTCCTTCCTCCCTGGGTCGCCTCGAGAG
CCTGAAAGAATTGAGTGTGAGTGGGAACGAGCTCGAGGGAGAGCTACCGC
ACGCGTTGGAAAAACTGGAGAAACTGCAGACGCTTGATTTGGCCGATAAT
CGATTTGCGGCCGATGCACCAAGGAGCCGGCAGGTGATCCGGGTCATGCG
GACGAGGGATTGTCAGATTTATATGTAGGAAGGGGAGGGAAGGAGGGCGG
GAAAAGGGGAATAGGAGGGGGTTTGAAGAGGAAAGGAAGTAGATACAGTG
GGTGGATTATAGAGAGAAAGAAAAAGAGAGAGAGAAAGAAAGATAGAAAG
AAAGAGAAGAAATGTACATAGAGGAGAGAGACAAAGGCAGAGAGTAAGAA
AGAATAAGGGAAAGAGGGACAGAGAGGGACGGAGCGTTAGAGACGAGAGA
GCGACACAGAGAAGAGGGGAAAACGAGAGAGCAGTCAATTTTGAATTTAA
GTGTTTCAATATGTGCCGGGTCAACGAAACCGGTTGGGTAAAGATTCTCA
CTCAAGTTCGTCCTTAAAAGAAGAAAAGAATAAAGAAGGAGGCGGCTGCG
TGCCTCCATCCCTGAGTTTTGACAGCAGCGGCGACAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGAAGAAGAAGAAGAAGAGTAAGAAGGGA
CGGAATTTACAACAGACGAATAAGCAGTAAGACTAAACTTTCGTTGGAAT
TCCTCTGGCTCAAGGCAGCTTGGAGATGCGTTGGGAGACACGCGCGGGTA
GAGCCTAAGGCGAGTAGAGCCCGAGGACGACTTTCATTCAGTTTTGATGT
GAATTAGTGAAAGATTGACAGTAGAAAGAGGAAAAAAACAGAAAGGAGAT
GTGGAAGACGAAGGCAATAAAGACGGTTGAAAAGAAAAACCGGTAGTTGA
AGGGGGAGAACAAAGAATGCGATACAAGGGAGTGAAGTGAGAGAATTAGT
CCATTAAGTAATTTATGCATACAGTGATA
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protein sequence of NO03G01210.1

>NO03G01210.1-protein ID=NO03G01210.1-protein|Name=NO03G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MSHSPPHHHSTMNRPATFRMLPPECYDHIVGFLRYKDLVRVSMTSVDTWM
AYFRVQSRLEQLRAKNVRSRRRRRALFAQLRVSTGLKILSLVNVQHPCTS
VLFRQVSGMHGLQELDLSANGLKGPLPPSIGDDLPLLRVLSLSNNGLTGT
LPPGWGKLHRLEDLKLSFNSLQGSIPDSWAGMISLRHISLSYNQLSGPVP
SFFSTLRDLETLLLGGNRFTGVLPPSLGALSHINSLYLFQNELEGPIPDS
LGSCVALQKLLLSHNKLTGKLPSSLGRLESLKELSVSGNELEGELPHALE
KLEKLQTLDLADNRFAADAPRSRQVIRVMRTRDCQIYM*
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mRNA from alignment at chr3:373234..376196+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01210.1 ID=NO03G01210.1|Name=NO03G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2963bp|location=Sequence derived from alignment at chr3:373234..376196+ (Nannochloropsis oceanica)
GTCCAAGGTGAGAACTCGTGAGACAACGACCACCACAGCTCTTTCCCAAA
ATGTGACATGGGTTTATCAACATATGTAGAGCAAACAAAAAAGCTAATAA
TGTTAATTGTTTCCGATAAATGTTTCCCACACACCGTCTGTGAAGAGCAT
TCTGCGTTGTTTTGAGCAAAAGGGCGGGGAGGAGGAGTCCCGCCCTCCTT
CAAGTTGCTCGCTCGTGCAAAATTTGTCGCGACACGAAAGGAATGTCGTC
ATTTTCTACTGGAATGACCGCGAGTGGCCTAGGTGACAGTGTGTCACTTA
GAGTAAAGCATGTACTGATCGGACAACGACCAAGTAAGGTTACCTGCATG
ACCTCCCCACGTGACAACCTTCCCCCAGTCCAAAACGATGCACCCCAGCC
GCAGGTCGCACGCACCAGCGCAGCATCAATTAGGAGGTCCAGGCAGGGGA
CATGCACGACCGCAAGGACTTCAACTGCTCTTGTGCTTCCCACTCAGCCT
TGTTGTAAAACATGTCTCATTCCCCACCCCACCACCACAGCACCATGAAT
AGGCCGGCGACATTCCGCATGCTGCCGCCCGAGTGCTACGACCATATTGT
GGGATTCCTGCGCTACAAAGATGTAAGTACTCACCAAGACGTTGTAATAG
GATTGCCAGGACAGCGAACGAGTGACGGAGGGCGGGGTCGTGACAAAGAC
CATTCCATGCAACTGTCTCCCCCCTTGCGCGGGAGCCACGTGTATTTGTG
ACTCACCTCGGTATTAACGTGGGTCCCCTTCCCGCAGTGCCAGTCGATCC
CTTAGTTCTTGTCGGACGCCGCTTTCGGGGGAAGGACCACTCCCTCCCTT
TACTGATATGTAGACGTGCTAGAAGCCCTCCTTTCCTCACCACAACTCTT
CTTCTCATATCCCCTTGGGCGCATGCCACTGACCCGTCCCACCGTTATCC
TCTTCGGGGCGCAGACCACTTGAGTTGTATCGTTCCATAGGCGACGTGCC
TTTCGAAAGAGCGGCCTTCCTTCGCCGTTTGTCGCTGCTCCCTTCCCGAC
ACTCTCAGACCCTCTCAGACCCTCTTTTCCCCCCTCCCTCACTTCCCTCC
CTCCATCTCTACTCTCCACCTCCCAAACAGCTCGTCCGCGTCTCCATGAC
AAGCGTGGACACTTGGATGGCCTACTTCCGGGTGCAGAGCCGTTTGGAAC
AATTACGGGCCAAGAATGTGAGAAGTCGGAGACGGCGTCGCGCGCTGTTT
GCCCAGCTCCGGGTATCCACGGGATTGAAAATTTTGAGCCTTGTTAATGT
CCAGCATCCCTGCACAAGTACGTTTGAATGCTTGAAAATAGTGAGGAAGG
AGGGAAGAAGGGAATTTACACAGAAGTAAGAAAGAAAAGCTCCACTTATC
TTCCCCCTTCCCTCTACCCCCCCCCCCTCCCTCTTCCAATTAGGTGTCCT
ATTCCGGCAGGTCAGCGGTATGCATGGTCTTCAAGAACTCGACCTCTCTG
CCAACGGGCTCAAGGGCCCTCTCCCCCCCTCCATCGGTGACGACCTGCCC
CTCCTCCGTGTCCTCTCCCTCAGCAATAACGGGCTTACGGGCACCTTGCC
ACCGGGATGGGGCAAGCTCCACCGTCTCGAGGACCTCAAATTATCGTTCA
ATTCCTTACAAGGCAGCATCCCCGACTCCTGGGCCGGCATGATCTCCCTC
CGGCACATCTCCCTCTCCTACAACCAACTCTCCGGGCCCGTCCCCTCCTT
CTTCTCCACCCTCCGCGACCTTGAGACCCTGCTGTTGGGAGGGAACCGCT
TTACTGGCGTTCTCCCTCCGTCTCTGGGGGCATTAAGTCACATCAATTCC
CTCTACCTCTTCCAAAACGAACTCGAAGGCCCCATCCCTGACTCTCTCGG
CTCGTGCGTCGCCCTCCAAAAGCTGCTGTTGTCTCACAACAAGCTCACGG
GGAAGCTTCCTTCCTCCCTGGGTCGCCTCGAGAGCCTGAAAGAATTGAGT
GTGAGTGGGAACGAGCTCGAGGGAGAGCTACCGCACGCGTTGGAAAAACT
GGAGAAACTGCAGACGCTTGATTTGGCCGATAATCGATTTGCGGCCGATG
CACCAAGGAGCCGGCAGGTGATCCGGGTCATGCGGACGAGGGATTGTCAG
ATTTATATGTAGGAAGGGGAGGGAAGGAGGGCGGGAAAAGGGGAATAGGA
GGGGGTTTGAAGAGGAAAGGAAGTAGATACAGTGGGTGGATTATAGAGAG
AAAGAAAAAGAGAGAGAGAAAGAAAGATAGAAAGAAAGAGAAGAAATGTA
CATAGAGGAGAGAGACAAAGGCAGAGAGTAAGAAAGAATAAGGGAAAGAG
GGACAGAGAGGGACGGAGCGTTAGAGACGAGAGAGCGACACAGAGAAGAG
GGGAAAACGAGAGAGCAGTCAATTTTGAATTTAAGTGTTTCAATATGTGC
CGGGTCAACGAAACCGGTTGGGTAAAGATTCTCACTCAAGTTCGTCCTTA
AAAGAAGAAAAGAATAAAGAAGGAGGCGGCTGCGTGCCTCCATCCCTGAG
TTTTGACAGCAGCGGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGAAGAAGAAGAAGAAGAGTAAGAAGGGACGGAATTTACAACAGA
CGAATAAGCAGTAAGACTAAACTTTCGTTGGAATTCCTCTGGCTCAAGGC
AGCTTGGAGATGCGTTGGGAGACACGCGCGGGTAGAGCCTAAGGCGAGTA
GAGCCCGAGGACGACTTTCATTCAGTTTTGATGTGAATTAGTGAAAGATT
GACAGTAGAAAGAGGAAAAAAACAGAAAGGAGATGTGGAAGACGAAGGCA
ATAAAGACGGTTGAAAAGAAAAACCGGTAGTTGAAGGGGGAGAACAAAGA
ATGCGATACAAGGGAGTGAAGTGAGAGAATTAGTCCATTAAGTAATTTAT
GCATACAGTGATA
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Coding sequence (CDS) from alignment at chr3:373234..376196+

>NO03G01210.1 ID=NO03G01210.1|Name=NO03G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at chr3:373234..376196+ (Nannochloropsis oceanica)
ATGTCTCATTCCCCACCCCACCACCACAGCACCATGAATAGGCCGGCGAC
ATTCCGCATGCTGCCGCCCGAGTGCTACGACCATATTGTGGGATTCCTGC
GCTACAAAGATCTCGTCCGCGTCTCCATGACAAGCGTGGACACTTGGATG
GCCTACTTCCGGGTGCAGAGCCGTTTGGAACAATTACGGGCCAAGAATGT
GAGAAGTCGGAGACGGCGTCGCGCGCTGTTTGCCCAGCTCCGGGTATCCA
CGGGATTGAAAATTTTGAGCCTTGTTAATGTCCAGCATCCCTGCACAAGT
GTCCTATTCCGGCAGGTCAGCGGTATGCATGGTCTTCAAGAACTCGACCT
CTCTGCCAACGGGCTCAAGGGCCCTCTCCCCCCCTCCATCGGTGACGACC
TGCCCCTCCTCCGTGTCCTCTCCCTCAGCAATAACGGGCTTACGGGCACC
TTGCCACCGGGATGGGGCAAGCTCCACCGTCTCGAGGACCTCAAATTATC
GTTCAATTCCTTACAAGGCAGCATCCCCGACTCCTGGGCCGGCATGATCT
CCCTCCGGCACATCTCCCTCTCCTACAACCAACTCTCCGGGCCCGTCCCC
TCCTTCTTCTCCACCCTCCGCGACCTTGAGACCCTGCTGTTGGGAGGGAA
CCGCTTTACTGGCGTTCTCCCTCCGTCTCTGGGGGCATTAAGTCACATCA
ATTCCCTCTACCTCTTCCAAAACGAACTCGAAGGCCCCATCCCTGACTCT
CTCGGCTCGTGCGTCGCCCTCCAAAAGCTGCTGTTGTCTCACAACAAGCT
CACGGGGAAGCTTCCTTCCTCCCTGGGTCGCCTCGAGAGCCTGAAAGAAT
TGAGTGTGAGTGGGAACGAGCTCGAGGGAGAGCTACCGCACGCGTTGGAA
AAACTGGAGAAACTGCAGACGCTTGATTTGGCCGATAATCGATTTGCGGC
CGATGCACCAAGGAGCCGGCAGGTGATCCGGGTCATGCGGACGAGGGATT
GTCAGATTTATATGTAG
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Synonyms
Publications