NO03G01130, NO03G01130 (gene) Nannochloropsis oceanica

Overview
NameNO03G01130
Unique NameNO03G01130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length375
Alignment locationchr3:351051..351425 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:351051..351425 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026507UPF0691
Homology
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BLAST of NO03G01130 vs. NCBI_GenBank
Match: EWM29598.1 (hypothetical protein Naga_100006g45 [Nannochloropsis gaditana])

HSP 1 Score: 76.6 bits (187), Expect = 5.900e-11
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 0 
Query:   57 KYLQAYHHQTKAENPLYRTSQSVIGAHPPSVATVVTERYAIPQAFSSSVGNILFSDQ 114
            KY +AY H+TK EN LYRTSQSVIGA PP++AT+VTE +  PQ FS S+G++ + +Q
Sbjct:   31 KYFRAYRHETKVENALYRTSQSVIGARPPTIATIVTETHKFPQPFSKSLGSLSYRNQ 87
The following BLAST results are available for this feature:
BLAST of NO03G01130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29598.15.900e-1159.65hypothetical protein Naga_100006g45 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01130.1NO03G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635553gene_1286Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g45gene1081Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01130.1NO03G01130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01130 ID=NO03G01130|Name=NO03G01130|organism=Nannochloropsis oceanica|type=gene|length=375bp
ATGGGCGTTGCTCCTCCTTCCCCCTTCCTTGCCGCTAAAACCGTTGCTGC
TGTCACCCATTCCCTCGACCGAACACTTGGCAAAGATACCTTGCAGCGGC
ACAACAGTGAAGAAGAAAGTACAATCAGTGACGCAGTGCACAGCAGTGTT
ATGCACATACATGCCGAGAAATACCTGCAGGCCTACCACCACCAGACCAA
GGCCGAGAACCCCCTCTATCGAACTAGCCAAAGCGTGATTGGCGCCCATC
CGCCTTCTGTAGCTACAGTCGTCACGGAGCGGTACGCCATCCCACAGGCC
TTTAGTAGCTCCGTTGGTAACATTTTGTTCAGTGATCAGGTACGTTTTGG
GGACGCGCGGGTGCGCTGCGCTTGA
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protein sequence of NO03G01130.1

>NO03G01130.1-protein ID=NO03G01130.1-protein|Name=NO03G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MGVAPPSPFLAAKTVAAVTHSLDRTLGKDTLQRHNSEEESTISDAVHSSV
MHIHAEKYLQAYHHQTKAENPLYRTSQSVIGAHPPSVATVVTERYAIPQA
FSSSVGNILFSDQVRFGDARVRCA*
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Synonyms
Publications