NO03G01130.1, NO03G01130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01130.1
Unique NameNO03G01130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length375
Alignment locationchr3:351051..351425 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:351051..351425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G01130.1 vs.
Match: EWM29598.1 (hypothetical protein Naga_100006g45 [Nannochloropsis gaditana])

HSP 1 Score: 76.6 bits (187), Expect = 5.900e-11
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 0 
Query:   57 KYLQAYHHQTKAENPLYRTSQSVIGAHPPSVATVVTERYAIPQAFSSSVGNILFSDQ 114
            KY +AY H+TK EN LYRTSQSVIGA PP++AT+VTE +  PQ FS S+G++ + +Q
Sbjct:   31 KYFRAYRHETKVENALYRTSQSVIGARPPTIATIVTETHKFPQPFSKSLGSLSYRNQ 87
The following BLAST results are available for this feature:
BLAST of NO03G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29598.15.900e-1159.65hypothetical protein Naga_100006g45 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01130NO03G01130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01130.1NO03G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01130.1.cds1NO03G01130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01130.1 ID=NO03G01130.1|Name=NO03G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=375bp
ATGGGCGTTGCTCCTCCTTCCCCCTTCCTTGCCGCTAAAACCGTTGCTGC
TGTCACCCATTCCCTCGACCGAACACTTGGCAAAGATACCTTGCAGCGGC
ACAACAGTGAAGAAGAAAGTACAATCAGTGACGCAGTGCACAGCAGTGTT
ATGCACATACATGCCGAGAAATACCTGCAGGCCTACCACCACCAGACCAA
GGCCGAGAACCCCCTCTATCGAACTAGCCAAAGCGTGATTGGCGCCCATC
CGCCTTCTGTAGCTACAGTCGTCACGGAGCGGTACGCCATCCCACAGGCC
TTTAGTAGCTCCGTTGGTAACATTTTGTTCAGTGATCAGGTACGTTTTGG
GGACGCGCGGGTGCGCTGCGCTTGA
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protein sequence of NO03G01130.1

>NO03G01130.1-protein ID=NO03G01130.1-protein|Name=NO03G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MGVAPPSPFLAAKTVAAVTHSLDRTLGKDTLQRHNSEEESTISDAVHSSV
MHIHAEKYLQAYHHQTKAENPLYRTSQSVIGAHPPSVATVVTERYAIPQA
FSSSVGNILFSDQVRFGDARVRCA*
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mRNA from alignment at chr3:351051..351425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01130.1 ID=NO03G01130.1|Name=NO03G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=375bp|location=Sequence derived from alignment at chr3:351051..351425- (Nannochloropsis oceanica)
ATGGGCGTTGCTCCTCCTTCCCCCTTCCTTGCCGCTAAAACCGTTGCTGC
TGTCACCCATTCCCTCGACCGAACACTTGGCAAAGATACCTTGCAGCGGC
ACAACAGTGAAGAAGAAAGTACAATCAGTGACGCAGTGCACAGCAGTGTT
ATGCACATACATGCCGAGAAATACCTGCAGGCCTACCACCACCAGACCAA
GGCCGAGAACCCCCTCTATCGAACTAGCCAAAGCGTGATTGGCGCCCATC
CGCCTTCTGTAGCTACAGTCGTCACGGAGCGGTACGCCATCCCACAGGCC
TTTAGTAGCTCCGTTGGTAACATTTTGTTCAGTGATCAGGTACGTTTTGG
GGACGCGCGGGTGCGCTGCGCTTGA
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Coding sequence (CDS) from alignment at chr3:351051..351425-

>NO03G01130.1 ID=NO03G01130.1|Name=NO03G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=375bp|location=Sequence derived from alignment at chr3:351051..351425- (Nannochloropsis oceanica)
ATGGGCGTTGCTCCTCCTTCCCCCTTCCTTGCCGCTAAAACCGTTGCTGC
TGTCACCCATTCCCTCGACCGAACACTTGGCAAAGATACCTTGCAGCGGC
ACAACAGTGAAGAAGAAAGTACAATCAGTGACGCAGTGCACAGCAGTGTT
ATGCACATACATGCCGAGAAATACCTGCAGGCCTACCACCACCAGACCAA
GGCCGAGAACCCCCTCTATCGAACTAGCCAAAGCGTGATTGGCGCCCATC
CGCCTTCTGTAGCTACAGTCGTCACGGAGCGGTACGCCATCCCACAGGCC
TTTAGTAGCTCCGTTGGTAACATTTTGTTCAGTGATCAGGTACGTTTTGG
GGACGCGCGGGTGCGCTGCGCTTGA
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Synonyms
Publications