NO03G00960, NO03G00960 (gene) Nannochloropsis oceanica

Overview
NameNO03G00960
Unique NameNO03G00960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1202
Alignment locationchr3:315837..317038 -

Link to JBrowse

Properties
Property NameValue
DescriptionCyclopropane-fatty-acyl-phospholipid synthase/ oxidoreductase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:315837..317038 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO03G00960 vs. NCBI_GenBank
Match: CBJ28321.1 (cyclopropane-fatty-acyl-phospholipid synthase/ oxidoreductase [Ectocarpus siliculosus])

HSP 1 Score: 355.9 bits (912), Expect = 1.300e-94
Identity = 167/248 (67.34%), Postives = 199/248 (80.24%), Query Frame = 0
Query:    1 MAFKGSLEEAQLRKVDTLISTCRVEKGHTLLDIGFGWGGIAIRAAETIGCKVVGITLSKEQKALAEEKVREKGLEHLIHFELVDYRVFARRHPGAFDRIISCEMIEAVGHSHLGEYFHAVGRLLKPNGVFVMEAITTPESRYVDYLKSTDFINTIVFPGSCCPSLTALMSAMATHSPLSLEGFINIDVHYAETLREWRRRFNRGMSVVKTHGFDDVFVRCWNYYLCYCEAAFESKTEGCLILTFSRPG 249
            +   GSLE+AQ RK D LI+  R+ K H LLDIGFGWGGI+IRAAET+GC+V GITLSKEQKALAEEKV  +GL+ LI FELVDYR FA++HPG FDRIISCEMIEAVGH++LG +F +   LL P GV VM+AITTPE+RY +Y++STDFINTI+FPGSCCPSLTAL+SAMA+ S  SLEG  N+ VHYA TL++WR RFN  +  V   GFD  FVRC+NYY  YCEA F S+TEG ++LTF+RPG
Sbjct:  807 LVLSGSLEKAQERKADALIARARLSKHHRLLDIGFGWGGISIRAAETVGCRVHGITLSKEQKALAEEKVLARGLQDLITFELVDYRDFAKQHPGEFDRIISCEMIEAVGHNYLGTFFASTDALLAPGGVMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLSAMASSSSFSLEGLDNMCVHYAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPG 1054          
BLAST of NO03G00960 vs. NCBI_GenBank
Match: GAX22236.1 (cyclopropane-fatty-acyl-phospholipid synthase [Fistulifera solaris])

HSP 1 Score: 344.0 bits (881), Expect = 5.000e-91
Identity = 162/252 (64.29%), Postives = 198/252 (78.57%), Query Frame = 0
Query:    1 MAFKGSLEEAQLRKVDTLISTCRVEKGHTLLDIGFGWGGIAIRAAETIGCKVVGITLSKEQKALAEEKVREKGLEHLIHFELVDYRVFARR--HPGAFDRIISCEMIEAVGHSHLGEYFHAVGRLLKPNGVFVMEAITTPESRYVDYLKSTDFINTIVFPGSCCPSLTALMSAMATHSPLSLEGFINIDVHYAETLREWRRRFNRGMSVVKTHGFDDVFVRCWNYYLCYCEAAFESKTEGCLILTFSRPGNT 251
            + F+G+LE+AQ RK+DTL+   +++ G T+LDIGFGWGG+++ AA+  GC V GITLS EQKALAE++V+E GLEHLI FE+VDYR F RR  + G +DR++SCEMIEAVGH HLGE+F AV ++L  +G+ VMEAITTPE RY  YL+STDFINTI+FPGSCCPSL AL+ A    S L+LE   NI +HYA+TL EWRRRFN    VV+  GFDDVF+RCWNYYL YCEA F S+TE CLIL FSRPG T
Sbjct:  690 LRFRGTLEQAQWRKLDTLLERAQIQPGQTMLDIGFGWGGLSLHAAQKYGCHVTGITLSVEQKALAEQRVKEAGLEHLITFEVVDYRTFCRRPANRGRYDRVLSCEMIEAVGHEHLGEFFWAVEQVLAKDGILVMEAITTPEQRYETYLRSTDFINTIIFPGSCCPSLHALVDAAYRQSCLTLEHIDNIGLHYAQTLAEWRRRFNASEDVVRKLGFDDVFLRCWNYYLTYCEAGFFSQTENCLILVFSRPGCT 941          
BLAST of NO03G00960 vs. NCBI_GenBank
Match: GAX19718.1 (cyclopropane-fatty-acyl-phospholipid synthase [Fistulifera solaris])

HSP 1 Score: 338.2 bits (866), Expect = 2.800e-89
Identity = 160/250 (64.00%), Postives = 195/250 (78.00%), Query Frame = 0
Query:    1 MAFKGSLEEAQLRKVDTLISTCRVEKGHTLLDIGFGWGGIAIRAAETIGCKVVGITLSKEQKALAEEKVREKGLEHLIHFELVDYRVFARR--HPGAFDRIISCEMIEAVGHSHLGEYFHAVGRLLKPNGVFVMEAITTPESRYVDYLKSTDFINTIVFPGSCCPSLTALMSAMATHSPLSLEGFINIDVHYAETLREWRRRFNRGMSVVKTHGFDDVFVRCWNYYLCYCEAAFESKTEGCLILTFSRPG 249
            + F+G+LE+AQ RK+DTL+   +++ G T+LDIGFGWGG+++ AA+  GC V GITLS EQKALAEE+V+E GLE LI FE+VDYR F RR  + G +DR++SCEMIEAVGH HLGE+F AV ++L  +G+ VMEAITTPE RY  YL+STDFINTI+FPGSCCPSL AL+ A    S L+LE   NI +HYA+TL EWRRRFN    VV+  GFDDVF+RCWNYYL YCEA F S+TE CLIL FSR G
Sbjct:  720 LRFRGTLEQAQWRKLDTLLERAQIQPGQTMLDIGFGWGGLSLHAAKKYGCHVTGITLSVEQKALAEERVKEAGLERLITFEVVDYRTFCRRPENRGKYDRVLSCEMIEAVGHEHLGEFFWAVEQVLAKDGILVMEAITTPEQRYETYLRSTDFINTIIFPGSCCPSLHALVDAAYRQSCLTLEHIDNIGLHYAQTLAEWRRRFNASEDVVRKLGFDDVFLRCWNYYLTYCEAGFFSQTENCLILVFSRQG 969          
BLAST of NO03G00960 vs. NCBI_GenBank
Match: XP_002183150.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45368.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 332.4 bits (851), Expect = 1.500e-87
Identity = 165/272 (60.66%), Postives = 202/272 (74.26%), Query Frame = 0
Query:    1 MAFKGSLEEAQLRKVDTLISTCRVEKGHTLLDIGFGWGGIAIRAAETIGCKVVGITLSKEQKALAEEKVREKGLEHLIHFELVDYRVFARR--HPGAFDRIISCEMIEAVGHSHLGEYFHAVGRLLKPNGVFVMEAITTPESRYVDYLKSTDFINTIVFPGSCCPSLTALMSAMATHSPLSLEGFINIDVHYAETLREWRRRFNRGMSVVKTHGFDDVFVRCWNYYLCYCEAAFESKTEGCLILTFSRPGNTQGLLDNTPCRITTALSHPQS 271
            + F+GSLEEAQ RK+DTL+   +++ G T+LDIGFGWGG++I AA+  GCKV GITLS EQKALAE++V+E+G+E LI FE+VDYR F  R  + G FDR++SCEMIEAVGH HL E+F AV ++L  +GV VMEAITTPE RY +YL+STDFINTI+FPGSCCPSL AL+ A    S L+LE   NI +HYA+TL EWRRRFN     V+  GFDDVF+R WNYYL YCEA F S+TE CLIL F+RPG          C+  TAL   +S
Sbjct:  668 LVFRGSLEEAQWRKLDTLLDRAQIQPGQTVLDIGFGWGGLSIHAAKKYGCKVTGITLSVEQKALAEKRVKEEGIESLITFEVVDYRTFCARKSNCGMFDRVLSCEMIEAVGHGHLVEFFWAVEQVLCRDGVLVMEAITTPEERYENYLRSTDFINTIIFPGSCCPSLHALVDAAYRGSTLTLEHVDNIGLHYAQTLAEWRRRFNAEEPFVRQLGFDDVFLRAWNYYLTYCEAGFFSQTENCLILVFARPG----------CKALTALCETRS 929          
BLAST of NO03G00960 vs. NCBI_GenBank
Match: XP_002294769.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED88129.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 330.5 bits (846), Expect = 5.700e-87
Identity = 159/250 (63.60%), Postives = 193/250 (77.20%), Query Frame = 0
Query:    2 AFKGSLEEAQLRKVDTLISTCRVEKGHTLLDIGFGWGGIAIRAAETIGCKVVGITLSKEQKALAEEKVREKGLEHLIHFELVDYRVFARR--HPGAFDRIISCEMIEAVGHSHLGEYFHAVGRLLKPNGVFVMEAITTPESRYVDYLKSTDFINTIVFPGSCCPSLTALMSAMATHSPLSLEGFINIDVHYAETLREWRRRFNRGMSVVKTHGFDDVFVRCWNYYLCYCEAAFESKTEGCLILTFSRPGN 250
            A   +  EAQ RK+DTL    +++ G TLLDIGFGWGG+++ AA+  GC+V GITLS EQKALAEE+V ++GL HLI+FE+VDYR FARR  + G FDR+ISCEMIEAVGH HLGE++ AV ++LK +GV VMEAITTPESRY  Y++STDFINT++FPG  CPSL AL+ A    S L+LE   NI +HYAETL EWRRRFN   + V+  GFDDVF+R WNYY+ YCEA F S+TE CLIL FSRPGN
Sbjct:  623 AMSAAPTEAQWRKLDTLCDRAQLQPGQTLLDIGFGWGGLSLHAAKKYGCRVTGITLSVEQKALAEERVEKEGLGHLINFEVVDYRTFARRKENSGKFDRVISCEMIEAVGHEHLGEFYWAVEQVLKYDGVLVMEAITTPESRYETYIRSTDFINTVIFPGGICPSLHALVDASYKWSTLTLEHIDNIGLHYAETLAEWRRRFNANEASVRKMGFDDVFMRVWNYYMTYCEAGFRSQTEHCLILVFSRPGN 872          
BLAST of NO03G00960 vs. NCBI_GenBank
Match: OEU17902.1 (CMAS-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 324.7 bits (831), Expect = 3.200e-85
Identity = 154/251 (61.35%), Postives = 192/251 (76.49%), Query Frame = 0
Query:    1 MAFKGSLEEAQLRKVDTLISTCRVEKGHTLLDIGFGWGGIAIRAAETIGCKVVGITLSKEQKALAEEKVREKGLEHLIHFELVDYRVFARR--HPGAFDRIISCEMIEAVGHSHLGEYFHAVGRLLKPNGVFVMEAITTPESRYVDYLKSTDFINTIVFPGSCCPSLTALMSAMATHSPLSLEGFINIDVHYAETLREWRRRFNRGMSVVKTH-GFDDVFVRCWNYYLCYCEAAFESKTEGCLILTFSRPG 249
            + FKG+LEEAQ RK+DTL+   +V+ G T+LDIGFGWGG+++ AA+  GC VVGITLS EQ+ALA E+V+ +GLEHLI FE++DYR FARR  + G FDR++SCEMIEAVGH HL E+F  V ++LKP+G+ VMEAITT E RY +YLKSTDFINT++FPGSCCP L AL+ A    S L+LE   NI +HYA+TL +WRRRFN     V    GFDD+F+R WNYYLCYCEA F ++   CLIL F+R G
Sbjct:  682 LVFKGTLEEAQWRKLDTLLDRAQVQPGQTVLDIGFGWGGLSLHAAQKYGCTVVGITLSVEQRALAMERVKAQGLEHLITFEVIDYRTFARRPSNIGKFDRVLSCEMIEAVGHDHLHEFFWVVEQVLKPDGILVMEAITTTEERYENYLKSTDFINTVIFPGSCCPCLHALVDAAYKGSRLTLEHIDNIGLHYAQTLADWRRRFNAQSEFVSQDLGFDDIFLRAWNYYLCYCEAGFYARNVNCLILVFARNG 932          
BLAST of NO03G00960 vs. NCBI_GenBank
Match: GAQ87328.1 (Cyclopropane-fatty-acyl-phospholipid synthase [Klebsormidium nitens])

HSP 1 Score: 262.3 bits (669), Expect = 1.900e-66
Identity = 126/247 (51.01%), Postives = 162/247 (65.59%), Query Frame = 0
Query:    7 LEEAQLRKVDTLISTCRVEKGHTLLDIGFGWGGIAIRAAETIGCKVVGITLSKEQKALAEEKVREKGLEHLIHFELVDYRVFARRHPGAFDRIISCEMIEAVGHSHLGEYFHAVGRLLKPNGVFVMEAITTPESRYVDYLKSTDFINTIVFPGSCCPSLTALMSAMATHSPLSLEGFINIDVHYAETLREWRRRFNRGMSVVKTHGFDDVFVRCWNYYLCYCEAAFESKTEGCLILTFSRPGNTQGL 254
            L++AQLRK+  +I   R+   H +L+IGFGWG +++      GC V GITLS++Q  LA  +V+  GL+  I F L DYR  A    G FDRI+SCEM+EAVGH    ++FH   RLL P+G+ V++ ITTPE RY +Y  S+DFI   +FPG+CCPSLTALM AM THS L +EG  NI VHY  TL  WR  F+   S ++  GF   FVR W+YY  YC A F+++T G L + FSRPGNT GL
Sbjct:  621 LKDAQLRKLHAMIDKARITSSHHVLEIGFGWGSMSMELVRRTGCHVTGITLSEQQLQLATARVKAAGLQAKISFMLCDYR--ALPGIGTFDRIVSCEMLEAVGHEFYPDFFHHCDRLLAPDGIMVVQVITTPEERYEEYRCSSDFIKEYIFPGACCPSLTALMQAMTTHSNLCVEGVENIGVHYVPTLLRWRDTFHEKQSEIEAMGFGPKFVRTWDYYFAYCAAGFQTRTIGDLQIIFSRPGNTSGL 865          
BLAST of NO03G00960 vs. NCBI_GenBank
Match: XP_005717868.1 (unnamed protein product [Chondrus crispus] >CDF37999.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 253.8 bits (647), Expect = 6.800e-64
Identity = 132/250 (52.80%), Postives = 163/250 (65.20%), Query Frame = 0
Query:    6 SLEEAQLRKVDTLISTCRVEKGHTLLDIGFGWGGIAIRAAETIGCKVVGITLSKEQKALAEEKVREKGLEHLIHFELVDYRVFARRHPGAFDRIISCEMIEAVGHSHLGEYFHAVGRLLKPNGVFVMEAITTPESRYVDYLKSTDFINTIVFPGSCCPSLTALMSAMATHSPLSLEGFINIDVHYAETLREWRRRF--NRGMSVVKTHGFDDVFVRCWNYYLCYCEAAFESKTEGCLILTFSRPGNTQGL 254
            +L+ AQ  K+D +I    +     +LDIG GWG +AIRA +  GC+V GITLS+EQ ALA ++    G+   I FELVDYRV A R    FDRI+S EMIEAVGH  LG +F A+  LL P G+ VM+AITTPE RY +Y  +TDFI   +FPG  CPS  AL++AMA +S L +EG  NI  HYA TL+EWRRRF  +     V   GFDDVFVR W YY CYCEA F ++T G L + FS+  NT  L
Sbjct:  196 TLDTAQHAKIDKVIDKACITSDSHVLDIGCGWGELAIRAVQRTGCRVTGITLSREQLALANKRAHAAGVADRITFELVDYRVVAARGI-HFDRIVSVEMIEAVGHEFLGTFFAAIQNLLAPQGLLVMQAITTPEERYEEYRTTTDFIQKYIFPGGICPSFEALVTAMAKNSKLCVEGVENIGPHYATTLKEWRRRFLASEKNGDVAAAGFDDVFVRKWVYYFCYCEAGFATRTLGVLQVVFSKSRNTATL 444          
BLAST of NO03G00960 vs. NCBI_GenBank
Match: KOO23729.1 (cyclopropane-fatty-acyl-phospholipid synthase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 253.8 bits (647), Expect = 6.800e-64
Identity = 126/297 (42.42%), Postives = 179/297 (60.27%), Query Frame = 0
Query:    6 SLEEAQLRKVDTLISTCRVEKGHTLLDIGFGWGGIAIRAAETIGCKVVGITLSKEQKALAEEKVREKGLEHLIHFELVDYRVFARRHPG-AFDRIISCEMIEAVGHSHLGEYFHAVGRLLKPNGVFVMEAITTPESRYVDYLKSTDFINTIVFPGSCCPSLTALMSAMATHSPLSLEGFINIDVHYAETLREWRRRFNRGMSVVKTHGFDDVFVRCWNYYLCYCEAAFESKTEGCLILTFSRPGN--TQGLLDNTPCRITTALSHPQSPKTTTVSVGTSPRKEGGKEGGGSGPTTPQ 300
            SL++AQ+ K+D LIS  ++EK HT+L+IGFGWG ++IR A+ +GCK+VG+TLS +QKA AE +V + G+  LI +   DYR F     G  FDR++SCEM+EAVGH +L +++ AV  L+ P+G+ V++ ITTP+ RY DY  S +FIN  +FPG+CCPS  AL +A    S L++E   NI  HY  TL +WRR F      +K  GFDD F+R W YY  YCE  F+ +  G L + +S+  N      ++   C  +  L H         +  ++P       G   GP TP+
Sbjct:   61 SLQQAQMNKLDLLISKLKLEKHHTVLEIGFGWGALSIRIAQLVGCKIVGLTLSHDQKAEAEMRVAKAGVCDLIQYHYTDYRTFHESSGGRTFDRVVSCEMLEAVGHEYLPDFYKAVDELMAPHGIAVVQVITTPDDRYEDYRHSAEFINVHIFPGACCPSFGALTAACTAASSLTVEHVQNIGPHYVPTLAQWRRNFMANQEKLKKLGFDDAFIRKWEYYFHYCEVGFKLRVLGDLQIVYSKAANLDLNDTVETELCETSRGLEH-----FMDTNASSTPIPYSSNMGAFMGPYTPR 352          
BLAST of NO03G00960 vs. NCBI_GenBank
Match: ESQ47479.1 (hypothetical protein EUTSA_v10020049mg [Eutrema salsugineum])

HSP 1 Score: 241.9 bits (616), Expect = 2.700e-60
Identity = 121/249 (48.59%), Postives = 152/249 (61.04%), Query Frame = 0
Query:    7 LEEAQLRKVDTLISTCRVEKGHTLLDIGFGWGGIAIRAAETIGCKVVGITLSKEQKALAEEKVREKGLEHLIHFELVDYRVFARRHPGAFDRIISCEMIEAVGHSHLGEYFHAVGRLLKPNGVFVMEAITTPESRYVDYLKSTDFINTIVFPGSCCPSLTALMSAMATHSPLSLEGFINIDVHYAETLREWRRRFNRGMSVVKTHGFDDVFVRCWNYYLCYCEAAFESKTEGCLILTFSRPGNTQGLLD 256
            L  AQ+RK+  LI   R+EK H +L+IG GWG +AI      GCK  GITLS EQ   AEEKV+E GLE  I FEL DYR  +  H   +DRIISCEM+EAVGH  +  +F      L  +G+FV++ I+ PE RY +Y  S+DFI   +FPG C PSL  + SAMA+ S L +E   NI +HY +TLR WR+ F      +   GFDD F+R W YY  YC A F++ T G   + FSRPGN   L D
Sbjct:  599 LRTAQMRKISLLIDKARIEKNHEVLEIGCGWGTLAIEVVRRTGCKYTGITLSIEQLKYAEEKVKEAGLEDRIKFELCDYRQLSNAH--KYDRIISCEMLEAVGHEFMETFFTHCEAALAEDGIFVLQFISIPEERYDEYRLSSDFIKEYIFPGGCLPSLARVTSAMASSSRLCIENVENIGIHYYQTLRSWRKTFLEREKQIMDLGFDDKFIRTWEYYFDYCAAGFKTLTLGNYQVVFSRPGNVAALGD 845          
The following BLAST results are available for this feature:
BLAST of NO03G00960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ28321.11.300e-9467.34cyclopropane-fatty-acyl-phospholipid synthase/ oxi... [more]
GAX22236.15.000e-9164.29cyclopropane-fatty-acyl-phospholipid synthase [Fis... [more]
GAX19718.12.800e-8964.00cyclopropane-fatty-acyl-phospholipid synthase [Fis... [more]
XP_002183150.11.500e-8760.66predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002294769.15.700e-8763.60predicted protein, partial [Thalassiosira pseudona... [more]
OEU17902.13.200e-8561.35CMAS-domain-containing protein [Fragilariopsis cyl... [more]
GAQ87328.11.900e-6651.01Cyclopropane-fatty-acyl-phospholipid synthase [Kle... [more]
XP_005717868.16.800e-6452.80unnamed protein product [Chondrus crispus] >CDF379... [more]
KOO23729.16.800e-6442.42cyclopropane-fatty-acyl-phospholipid synthase [Chr... [more]
ESQ47479.12.700e-6048.59hypothetical protein EUTSA_v10020049mg [Eutrema sa... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005821NSK005821Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00960.1NO03G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|548848gene_1267Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g29gene1096Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00960.1NO03G00960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00960 ID=NO03G00960|Name=NO03G00960|organism=Nannochloropsis oceanica|type=gene|length=1202bp
ATGGCGTTCAAGGGATCTTTGGAAGAGGCGCAATTACGAAAAGTGGACAC
ATTGATCAGCACGTGTCGGGTAGAGAAGGGGCATACGCTTTTGGATATCG
GATTTGGGTGGGGGGGGATTGCGATTCGGGCCGCGGAGACGATAGGGTGC
AAGGTGGTGGGAATCACCCTAAGCAAGGAGCAGAAGGCTCTGGCGGAGGA
AAAGGTGCGGGAGAAGGGCTTGGAGCACTTGATTCATTTTGAACTGGTGG
ATTACCGGGTCTTTGCGCGGCGgtacgtgacgtgtagcttgatgaatggg
gattggttgtggtttgatagtttttgcgttcgacacgtggtatgtgactt
atgtatcgatttttccttccttttttttctcctcccccaccctccaatca
ttctatttttcagACATCCGGGTGCTTTCGACCGCATTATCTCTTGTGAG
ATGATCGAGGCCGTAGGGCACAGTCACTTGGGTGAGTACTTCCACGCCGT
CGGCCGCCTGCTCAAGCCGAACGGAGTATTCGTCATGGAGGCCATCACCA
CGCCCGAGAGCCGgtacgtttttttttctccctcccatcctcctggcttc
ccccccttttctcctagttgtaaatgttcgagttaatcgcaaaccccgct
tccctcctttctctccttccttactccagGTATGTGGACTACTTGAAGAG
CACGGATTTCATCAACACCATCGTCTTCCCCGGCTCCTGTTGCCCCTCCC
TCACTGCCTTGATGTCCGCCATGGCCACCCACAGCCCCTTGTCGCTTGAA
GGATTTATAAATATTGACGTGCACTACGCCGAGACATTGAGGGAGTGGAG
GAGGCGGTTCAACAGAGGCATGAGTGTGGTCAAAACTCATGGCTTCGACG
ACGTTTTTGTCCGATGTTGGAACTACTATTTGTGCTACTGCGAAGCGGCG
TTTGAGAGTAAGACGGAGGGGTGCCTTATCCTGACTTTTTCGCGGCCTGG
GAACACTCAAGGGCTTCTAGATAACACTCCTTGTCGAATTACTACGGCCT
TGTCCCATCCCCAATCCCCGAAGACGACGACAGTGAGTGTGGGAACGAGC
CCACGGAAAGAGGGAGGGAAGGAGGGTGGCGGCAGTGGACCAACAACGCC
GCAGCGGTTATTGCAGTATGCACGGGAGAAACTGATCGCAGGGAGTGGTT
AA
back to top

protein sequence of NO03G00960.1

>NO03G00960.1-protein ID=NO03G00960.1-protein|Name=NO03G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MAFKGSLEEAQLRKVDTLISTCRVEKGHTLLDIGFGWGGIAIRAAETIGC
KVVGITLSKEQKALAEEKVREKGLEHLIHFELVDYRVFARRHPGAFDRII
SCEMIEAVGHSHLGEYFHAVGRLLKPNGVFVMEAITTPESRYVDYLKSTD
FINTIVFPGSCCPSLTALMSAMATHSPLSLEGFINIDVHYAETLREWRRR
FNRGMSVVKTHGFDDVFVRCWNYYLCYCEAAFESKTEGCLILTFSRPGNT
QGLLDNTPCRITTALSHPQSPKTTTVSVGTSPRKEGGKEGGGSGPTTPQR
LLQYAREKLIAGSG*
back to top
Synonyms
Publications