NO03G00960.1, NO03G00960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00960.1
Unique NameNO03G00960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length945
Alignment locationchr3:315837..317038 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:315837..317038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00960.1 vs.
Match: CBJ28321.1 (cyclopropane-fatty-acyl-phospholipid synthase/ oxidoreductase [Ectocarpus siliculosus])

HSP 1 Score: 355.9 bits (912), Expect = 1.300e-94
Identity = 167/248 (67.34%), Postives = 199/248 (80.24%), Query Frame = 0 
Query:    1 MAFKGSLEEAQLRKVDTLISTCRVEKGHTLLDIGFGWGGIAIRAAETIGCKVVGITLSKEQKALAEEKVREKGLEHLIHFELVDYRVFARRHPGAFDRIISCEMIEAVGHSHLGEYFHAVGRLLKPNGVFVMEAITTPESRYVDYLKSTDFINTIVFPGSCCPSLTALMSAMATHSPLSLEGFINIDVHYAETLREWRRRFNRGMSVVKTHGFDDVFVRCWNYYLCYCEAAFESKTEGCLILTFSRPG 249
            +   GSLE+AQ RK D LI+  R+ K H LLDIGFGWGGI+IRAAET+GC+V GITLSKEQKALAEEKV  +GL+ LI FELVDYR FA++HPG FDRIISCEMIEAVGH++LG +F +   LL P GV VM+AITTPE+RY +Y++STDFINTI+FPGSCCPSLTAL+SAMA+ S  SLEG  N+ VHYA TL++WR RFN  +  V   GFD  FVRC+NYY  YCEA F S+TEG ++LTF+RPG
Sbjct:  807 LVLSGSLEKAQERKADALIARARLSKHHRLLDIGFGWGGISIRAAETVGCRVHGITLSKEQKALAEEKVLARGLQDLITFELVDYRDFAKQHPGEFDRIISCEMIEAVGHNYLGTFFASTDALLAPGGVMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLSAMASSSSFSLEGLDNMCVHYAHTLKQWRHRFNHSLDQVMAQGFDSAFVRCFNYYFAYCEAGFVSRTEGLMMLTFARPG 1054
The following BLAST results are available for this feature:
BLAST of NO03G00960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28321.11.300e-9467.34cyclopropane-fatty-acyl-phospholipid synthase/ oxi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00960NO03G00960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00960.1NO03G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00960.1.cds1NO03G00960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00960.1.cds2NO03G00960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00960.1.cds3NO03G00960.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00960.1 ID=NO03G00960.1|Name=NO03G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=945bp
ATGGCGTTCAAGGGATCTTTGGAAGAGGCGCAATTACGAAAAGTGGACAC
ATTGATCAGCACGTGTCGGGTAGAGAAGGGGCATACGCTTTTGGATATCG
GATTTGGGTGGGGGGGGATTGCGATTCGGGCCGCGGAGACGATAGGGTGC
AAGGTGGTGGGAATCACCCTAAGCAAGGAGCAGAAGGCTCTGGCGGAGGA
AAAGGTGCGGGAGAAGGGCTTGGAGCACTTGATTCATTTTGAACTGGTGG
ATTACCGGGTCTTTGCGCGGCGACATCCGGGTGCTTTCGACCGCATTATC
TCTTGTGAGATGATCGAGGCCGTAGGGCACAGTCACTTGGGTGAGTACTT
CCACGCCGTCGGCCGCCTGCTCAAGCCGAACGGAGTATTCGTCATGGAGG
CCATCACCACGCCCGAGAGCCGGTATGTGGACTACTTGAAGAGCACGGAT
TTCATCAACACCATCGTCTTCCCCGGCTCCTGTTGCCCCTCCCTCACTGC
CTTGATGTCCGCCATGGCCACCCACAGCCCCTTGTCGCTTGAAGGATTTA
TAAATATTGACGTGCACTACGCCGAGACATTGAGGGAGTGGAGGAGGCGG
TTCAACAGAGGCATGAGTGTGGTCAAAACTCATGGCTTCGACGACGTTTT
TGTCCGATGTTGGAACTACTATTTGTGCTACTGCGAAGCGGCGTTTGAGA
GTAAGACGGAGGGGTGCCTTATCCTGACTTTTTCGCGGCCTGGGAACACT
CAAGGGCTTCTAGATAACACTCCTTGTCGAATTACTACGGCCTTGTCCCA
TCCCCAATCCCCGAAGACGACGACAGTGAGTGTGGGAACGAGCCCACGGA
AAGAGGGAGGGAAGGAGGGTGGCGGCAGTGGACCAACAACGCCGCAGCGG
TTATTGCAGTATGCACGGGAGAAACTGATCGCAGGGAGTGGTTAA
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protein sequence of NO03G00960.1

>NO03G00960.1-protein ID=NO03G00960.1-protein|Name=NO03G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MAFKGSLEEAQLRKVDTLISTCRVEKGHTLLDIGFGWGGIAIRAAETIGC
KVVGITLSKEQKALAEEKVREKGLEHLIHFELVDYRVFARRHPGAFDRII
SCEMIEAVGHSHLGEYFHAVGRLLKPNGVFVMEAITTPESRYVDYLKSTD
FINTIVFPGSCCPSLTALMSAMATHSPLSLEGFINIDVHYAETLREWRRR
FNRGMSVVKTHGFDDVFVRCWNYYLCYCEAAFESKTEGCLILTFSRPGNT
QGLLDNTPCRITTALSHPQSPKTTTVSVGTSPRKEGGKEGGGSGPTTPQR
LLQYAREKLIAGSG*
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mRNA from alignment at chr3:315837..317038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00960.1 ID=NO03G00960.1|Name=NO03G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1202bp|location=Sequence derived from alignment at chr3:315837..317038- (Nannochloropsis oceanica)
ATGGCGTTCAAGGGATCTTTGGAAGAGGCGCAATTACGAAAAGTGGACAC
ATTGATCAGCACGTGTCGGGTAGAGAAGGGGCATACGCTTTTGGATATCG
GATTTGGGTGGGGGGGGATTGCGATTCGGGCCGCGGAGACGATAGGGTGC
AAGGTGGTGGGAATCACCCTAAGCAAGGAGCAGAAGGCTCTGGCGGAGGA
AAAGGTGCGGGAGAAGGGCTTGGAGCACTTGATTCATTTTGAACTGGTGG
ATTACCGGGTCTTTGCGCGGCGGTACGTGACGTGTAGCTTGATGAATGGG
GATTGGTTGTGGTTTGATAGTTTTTGCGTTCGACACGTGGTATGTGACTT
ATGTATCGATTTTTCCTTCCTTTTTTTTCTCCTCCCCCACCCTCCAATCA
TTCTATTTTTCAGACATCCGGGTGCTTTCGACCGCATTATCTCTTGTGAG
ATGATCGAGGCCGTAGGGCACAGTCACTTGGGTGAGTACTTCCACGCCGT
CGGCCGCCTGCTCAAGCCGAACGGAGTATTCGTCATGGAGGCCATCACCA
CGCCCGAGAGCCGGTACGTTTTTTTTTCTCCCTCCCATCCTCCTGGCTTC
CCCCCCTTTTCTCCTAGTTGTAAATGTTCGAGTTAATCGCAAACCCCGCT
TCCCTCCTTTCTCTCCTTCCTTACTCCAGGTATGTGGACTACTTGAAGAG
CACGGATTTCATCAACACCATCGTCTTCCCCGGCTCCTGTTGCCCCTCCC
TCACTGCCTTGATGTCCGCCATGGCCACCCACAGCCCCTTGTCGCTTGAA
GGATTTATAAATATTGACGTGCACTACGCCGAGACATTGAGGGAGTGGAG
GAGGCGGTTCAACAGAGGCATGAGTGTGGTCAAAACTCATGGCTTCGACG
ACGTTTTTGTCCGATGTTGGAACTACTATTTGTGCTACTGCGAAGCGGCG
TTTGAGAGTAAGACGGAGGGGTGCCTTATCCTGACTTTTTCGCGGCCTGG
GAACACTCAAGGGCTTCTAGATAACACTCCTTGTCGAATTACTACGGCCT
TGTCCCATCCCCAATCCCCGAAGACGACGACAGTGAGTGTGGGAACGAGC
CCACGGAAAGAGGGAGGGAAGGAGGGTGGCGGCAGTGGACCAACAACGCC
GCAGCGGTTATTGCAGTATGCACGGGAGAAACTGATCGCAGGGAGTGGTT
AA
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Coding sequence (CDS) from alignment at chr3:315837..317038-

>NO03G00960.1 ID=NO03G00960.1|Name=NO03G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at chr3:315837..317038- (Nannochloropsis oceanica)
ATGGCGTTCAAGGGATCTTTGGAAGAGGCGCAATTACGAAAAGTGGACAC
ATTGATCAGCACGTGTCGGGTAGAGAAGGGGCATACGCTTTTGGATATCG
GATTTGGGTGGGGGGGGATTGCGATTCGGGCCGCGGAGACGATAGGGTGC
AAGGTGGTGGGAATCACCCTAAGCAAGGAGCAGAAGGCTCTGGCGGAGGA
AAAGGTGCGGGAGAAGGGCTTGGAGCACTTGATTCATTTTGAACTGGTGG
ATTACCGGGTCTTTGCGCGGCGACATCCGGGTGCTTTCGACCGCATTATC
TCTTGTGAGATGATCGAGGCCGTAGGGCACAGTCACTTGGGTGAGTACTT
CCACGCCGTCGGCCGCCTGCTCAAGCCGAACGGAGTATTCGTCATGGAGG
CCATCACCACGCCCGAGAGCCGGTATGTGGACTACTTGAAGAGCACGGAT
TTCATCAACACCATCGTCTTCCCCGGCTCCTGTTGCCCCTCCCTCACTGC
CTTGATGTCCGCCATGGCCACCCACAGCCCCTTGTCGCTTGAAGGATTTA
TAAATATTGACGTGCACTACGCCGAGACATTGAGGGAGTGGAGGAGGCGG
TTCAACAGAGGCATGAGTGTGGTCAAAACTCATGGCTTCGACGACGTTTT
TGTCCGATGTTGGAACTACTATTTGTGCTACTGCGAAGCGGCGTTTGAGA
GTAAGACGGAGGGGTGCCTTATCCTGACTTTTTCGCGGCCTGGGAACACT
CAAGGGCTTCTAGATAACACTCCTTGTCGAATTACTACGGCCTTGTCCCA
TCCCCAATCCCCGAAGACGACGACAGTGAGTGTGGGAACGAGCCCACGGA
AAGAGGGAGGGAAGGAGGGTGGCGGCAGTGGACCAACAACGCCGCAGCGG
TTATTGCAGTATGCACGGGAGAAACTGATCGCAGGGAGTGGTTAA
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Synonyms
Publications