NO03G00780, NO03G00780 (gene) Nannochloropsis oceanica

Overview
NameNO03G00780
Unique NameNO03G00780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1222
Alignment locationchr3:251102..252323 +

Link to JBrowse

Properties
Property NameValue
DescriptionUDENN
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:251102..252323 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000813ESCRT I complex
GO:0000813ESCRT I complex
Vocabulary: INTERPRO
TermDefinition
IPR018798FAM125
Homology
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BLAST of NO03G00780 vs. NCBI_GenBank
Match: EWM29615.1 (uDENN [Nannochloropsis gaditana])

HSP 1 Score: 171.4 bits (433), Expect = 3.400e-39
Identity = 85/168 (50.60%), Postives = 106/168 (63.10%), Query Frame = 0 
Query:    1 MTSHHPAHALDQQYSRRLIDYFGVCGLSHHDPK-----------------------------------SAGSTAILSAQATPPHTVARHDIMDVTIHLPDEVLPPGYTILAQTIDGNKGDLDNKGYFDRGSHGAFICYTRRGPQDRGPAIAELMVLSKGQALPPGFEL 134
            MTSHHPAHA D+QY+RRLIDYF VCGLSH +P+                                      S  + SA       VAR DIM+++IH+PDE+LPP YTI+AQTI GN+ DLD+K YF RGSHGAF+CY RRGPQD GPAIA++++L K +++P GFEL
Sbjct:    1 MTSHHPAHAFDKQYNRRLIDYFVVCGLSHRNPQIEIEALDGSGEPWCDIVPTSPSEITPHSSMPIFPVMPESNRLSSAVFPASRLVARQDIMEISIHMPDEILPPKYTIIAQTIGGNEADLDSKSYFARGSHGAFLCYIRRGPQDVGPAIADVIILDKKESVPAGFEL 168
The following BLAST results are available for this feature:
BLAST of NO03G00780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29615.13.400e-3950.60uDENN [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00780.1NO03G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00780.1NO03G00780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00780 ID=NO03G00780|Name=NO03G00780|organism=Nannochloropsis oceanica|type=gene|length=1222bp
ATGACCAGCCACCATCCCGCGCATGCCTTAGACCAGCAGTATAGCCGTCG
GCTCATAGACTACTTCGGGGTTTGCGGTCTGAGTCACCACGACCCCAAAT
CGgtatgttagagagaacaaggtggtcctttctttcccggttgcgggcct
gttctgtcaacctgaagtctccattttccctcatgtagtgggattaatca
tctcatatttcctttcatttctcgtcaatcatcttctacttcatttcaaa
tcacaagaaatcgaagccctggacacctacaatggcgagccttggtgtga
gttggtctctacaaccccgtccacaactcctggaacgatcgagggggtgc
agccctcattaccattgtcaacgttcgctgaatctcccagagttagccag
GCAGGTAGCACTGCCATCCTCTCGGCTCAAGCTACGCCTCCGCACACGGT
GGCACGGCATGACATTATGGACGTGACCATCCACTTACCTgtacgtgcta
attttcgcctgaactgtctatttatatccacttctatgtctgccctctta
ttttacaaagaccaatgttgattctaaagtgatatgctctcctcccctgc
cttccctctctctcctctctgccaatattacgttttttcgccccaaaata
cttaccgtccctttaaacatatctttttcttttacccgcttcctcagGAC
GAAGTGCTGCCGCCGGGGTACACCATCCTCGCCCAGACCATCGACGGCAA
CAAGGGAGATCTAGATAACAAGGGCTACTTTGACCGCGGCAGTCACGGGG
CCTTTATCTGCTACACTCGCCGAGGGCCGCAGGATCGAGGTCCTGCGATA
GCCGAGCTGATGGTGCTGAGCAAGGGCCAGGCTTTGCCCCCGGGATTTGA
GCTTGGTGACCACTTCCGTGGGAGGAAAGCCGCTCAAGGAGGTGAGGCTC
GCTGTTCGTCGGCAGCGATACGATGCCGCGCATCGCTACTTCGAGGACCG
GGCTGTGACTGGCCTGTATCTCGTTTGTCCTACCAAGGGCGAGTCGCTCC
CCATCACGGAACGCAAGGAGGGTCTTCCTCCTCCAAAATTGTGGAGGTCG
AGCCACCATCATTGCTAGGTAGCAATGACGCTCGGTCCTTGTTCCTCCTC
CTCTTTTTCTTCGTCGTCCGAAATATATCTTTCCGGCCACCGGGTCGGCG
GGAGCGGGTTCCACTTGCTTGA
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protein sequence of NO03G00780.1

>NO03G00780.1-protein ID=NO03G00780.1-protein|Name=NO03G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MTSHHPAHALDQQYSRRLIDYFGVCGLSHHDPKSAGSTAILSAQATPPHT
VARHDIMDVTIHLPDEVLPPGYTILAQTIDGNKGDLDNKGYFDRGSHGAF
ICYTRRGPQDRGPAIAELMVLSKGQALPPGFELGDHFRGRKAAQGGEARC
SSAAIRCRASLLRGPGCDWPVSRLSYQGRVAPHHGTQGGSSSSKIVEVEP
PSLLGSNDARSLFLLLFFFVVRNISFRPPGRRERVPLA*
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Synonyms
Publications