NO03G00780.1, NO03G00780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00780.1
Unique NameNO03G00780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr3:251102..252323 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:251102..252323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00780.1 vs.
Match: EWM29615.1 (uDENN [Nannochloropsis gaditana])

HSP 1 Score: 171.4 bits (433), Expect = 3.400e-39
Identity = 86/168 (51.19%), Postives = 108/168 (64.29%), Query Frame = 0 
Query:    1 MTSHHPAHALDQQYSRRLIDYFGVCGLSHHDPK-------SAG----------------------------STAILSAQATPPHTVARHDIMDVTIHLPDEVLPPGYTILAQTIDGNKGDLDNKGYFDRGSHGAFICYTRRGPQDRGPAIAELMVLSKGQALPPGFEL 134
            MTSHHPAHA D+QY+RRLIDYF VCGLSH +P+        +G                            S  + SA       VAR DIM+++IH+PDE+LPP YTI+AQTI GN+ DLD+K YF RGSHGAF+CY RRGPQD GPAIA++++L K +++P GFEL
Sbjct:    1 MTSHHPAHAFDKQYNRRLIDYFVVCGLSHRNPQIEIEALDGSGEPWCDIVPTSPSEITPHSSMPIFPVMPESNRLSSAVFPASRLVARQDIMEISIHMPDEILPPKYTIIAQTIGGNEADLDSKSYFARGSHGAFLCYIRRGPQDVGPAIADVIILDKKESVPAGFEL 168
The following BLAST results are available for this feature:
BLAST of NO03G00780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29615.13.400e-3951.19uDENN [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00780NO03G00780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00780.1NO03G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00780.1.cds1NO03G00780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00780.1.cds2NO03G00780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00780.1.cds3NO03G00780.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00780.1 ID=NO03G00780.1|Name=NO03G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp
atgaccagccaccatcccgcgcatgccttagaccagcagtatagccgtcg
gctcatagactacttcggggtttgcggtctgagtcaccacgaccccaaat
cggcaggtagcactgccatcctctcggctcaagctacgcctccgcacacg
gtggcacggcatgacattatggacgtgaccatccacttacctgacgaagt
gctgccgccggggtacaccatcctcgcccagaccatcgacggcaacaagg
gagatctagataacaagggctactttgaccgcggcagtcacggggccttt
atctgctacactcgccgagggccgcaggatcgaggtcctgcgatagccga
gctgatggtgctgagcaagggccaggctttgcccccgggatttgagcttg
gtgaccacttccgtgggaggaaagccgctcaaggaggtgaggctcgctgt
tcgtcggcagcgatacgatgccgcgcatcgctacttcgaggaccgggctg
tgactggcctgtatctcgtttgtcctaccaagggcgagtcgctccccatc
acggaacgcaaggagggtcttcctcctccaaaattgtggaggtcgagcca
ccatcattgctaggtagcaatgacgctcggtccttgttcctcctcctctt
tttcttcgtcgtccgaaatatatctttccggccaccgggtcggcgggagc
gggttccacttgcttga
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protein sequence of NO03G00780.1

>NO03G00780.1-protein ID=NO03G00780.1-protein|Name=NO03G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MTSHHPAHALDQQYSRRLIDYFGVCGLSHHDPKSAGSTAILSAQATPPHT
VARHDIMDVTIHLPDEVLPPGYTILAQTIDGNKGDLDNKGYFDRGSHGAF
ICYTRRGPQDRGPAIAELMVLSKGQALPPGFELGDHFRGRKAAQGGEARC
SSAAIRCRASLLRGPGCDWPVSRLSYQGRVAPHHGTQGGSSSSKIVEVEP
PSLLGSNDARSLFLLLFFFVVRNISFRPPGRRERVPLA*
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mRNA from alignment at chr3:251102..252323+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00780.1 ID=NO03G00780.1|Name=NO03G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1222bp|location=Sequence derived from alignment at chr3:251102..252323+ (Nannochloropsis oceanica)
atgaccagccaccatcccgcgcatgccttagaccagcagtatagccgtcg
gctcatagactacttcggggtttgcggtctgagtcaccacgaccccaaat
cggtatgttagagagaacaaggtggtcctttctttcccggttgcgggcct
gttctgtcaacctgaagtctccattttccctcatgtagtgggattaatca
tctcatatttcctttcatttctcgtcaatcatcttctacttcatttcaaa
tcacaagaaatcgaagccctggacacctacaatggcgagccttggtgtga
gttggtctctacaaccccgtccacaactcctggaacgatcgagggggtgc
agccctcattaccattgtcaacgttcgctgaatctcccagagttagccag
gcaggtagcactgccatcctctcggctcaagctacgcctccgcacacggt
ggcacggcatgacattatggacgtgaccatccacttacctgtacgtgcta
attttcgcctgaactgtctatttatatccacttctatgtctgccctctta
ttttacaaagaccaatgttgattctaaagtgatatgctctcctcccctgc
cttccctctctctcctctctgccaatattacgttttttcgccccaaaata
cttaccgtccctttaaacatatctttttcttttacccgcttcctcaggac
gaagtgctgccgccggggtacaccatcctcgcccagaccatcgacggcaa
caagggagatctagataacaagggctactttgaccgcggcagtcacgggg
cctttatctgctacactcgccgagggccgcaggatcgaggtcctgcgata
gccgagctgatggtgctgagcaagggccaggctttgcccccgggatttga
gcttggtgaccacttccgtgggaggaaagccgctcaaggaggtgaggctc
gctgttcgtcggcagcgatacgatgccgcgcatcgctacttcgaggaccg
ggctgtgactggcctgtatctcgtttgtcctaccaagggcgagtcgctcc
ccatcacggaacgcaaggagggtcttcctcctccaaaattgtggaggtcg
agccaccatcattgctaggtagcaatgacgctcggtccttgttcctcctc
ctctttttcttcgtcgtccgaaatatatctttccggccaccgggtcggcg
ggagcgggttccacttgcttga
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Coding sequence (CDS) from alignment at chr3:251102..252323+

>NO03G00780.1 ID=NO03G00780.1|Name=NO03G00780.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr3:251102..252323+ (Nannochloropsis oceanica)
atgaccagccaccatcccgcgcatgccttagaccagcagtatagccgtcg
gctcatagactacttcggggtttgcggtctgagtcaccacgaccccaaat
cggcaggtagcactgccatcctctcggctcaagctacgcctccgcacacg
gtggcacggcatgacattatggacgtgaccatccacttacctgacgaagt
gctgccgccggggtacaccatcctcgcccagaccatcgacggcaacaagg
gagatctagataacaagggctactttgaccgcggcagtcacggggccttt
atctgctacactcgccgagggccgcaggatcgaggtcctgcgatagccga
gctgatggtgctgagcaagggccaggctttgcccccgggatttgagcttg
gtgaccacttccgtgggaggaaagccgctcaaggaggtgaggctcgctgt
tcgtcggcagcgatacgatgccgcgcatcgctacttcgaggaccgggctg
tgactggcctgtatctcgtttgtcctaccaagggcgagtcgctccccatc
acggaacgcaaggagggtcttcctcctccaaaattgtggaggtcgagcca
ccatcattgctaggtagcaatgacgctcggtccttgttcctcctcctctt
tttcttcgtcgtccgaaatatatctttccggccaccgggtcggcgggagc
gggttccacttgcttga
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Synonyms
Publications