NO03G00770, NO03G00770 (gene) Nannochloropsis oceanica

Overview
NameNO03G00770
Unique NameNO03G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length833
Alignment locationchr3:249483..250315 -

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Properties
Property NameValue
DescriptionBestrophin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:249483..250315 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021134Bestrophin/UPF0187
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO03G00770 vs. NCBI_GenBank
Match: EWM29617.1 (Bestrophin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 162.5 bits (410), Expect = 1.500e-36
Identity = 91/161 (56.52%), Postives = 106/161 (65.84%), Query Frame = 0
Query:   51 LLLLLFLLPFCLSLHRAIPSAFLGPSHTCFVARHRSPCPTPPFHNFHVVTAATSLPTRRTHTRARGDATFLLDPPQRYQSSDWVENLQSLLDSRIAKRISGHLWFNTAWAGAVTALFEFMPQWHIDAYISPLPHQLMSSALGLLLVFRTNAAYDRFWEARK 212
            +L+   L+ FCL +  A   A + P H    +  R      P HN H   +           RA+   T LLDPPQRY+SSDW ENL+SL DSRI KRISGHL FNTAWA  VT ++E MPQWHI + ISP+PHQLMS+ALGLLLVFRTNAAYDRFWEARK
Sbjct:   79 VLVAAHLVFFCL-VSCASSIALIFPFHAASSSFTRQHVMFRP-HNCHSNPSVNHFVNHIGCRRAKSHVTALLDPPQRYKSSDWAENLRSLFDSRIVKRISGHLLFNTAWATGVTGVYESMPQWHIGSDISPVPHQLMSTALGLLLVFRTNAAYDRFWEARK 237          
BLAST of NO03G00770 vs. NCBI_GenBank
Match: AFA52595.1 (hypothetical protein [Vaucheria litorea])

HSP 1 Score: 104.0 bits (258), Expect = 6.400e-19
Identity = 48/89 (53.93%), Postives = 65/89 (73.03%), Query Frame = 0
Query:  128 YQSSDWVENLQSLLDSRIAKRISGHLWFNTAWAGAVTALFEFMPQWHIDAY-ISPLPHQLMSSALGLLLVFRTNAAYDRFWEARKCGAA 216
            + S+DW++N+++L  S+I K I+ HLWFNT WA  +T +  F PQ +ID + IS +P  LM+SAL LLL+FR NAAYDRFWE+RK   A
Sbjct:   58 FASNDWLDNIKNLPASKINKDITSHLWFNTGWAVLITCIHMFTPQHYIDDFHISTVPQTLMASALSLLLIFRNNAAYDRFWESRKVWGA 146          
BLAST of NO03G00770 vs. NCBI_GenBank
Match: CEM06220.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 100.9 bits (250), Expect = 5.400e-18
Identity = 55/125 (44.00%), Postives = 70/125 (56.00%), Query Frame = 0
Query:   87 PCPTPPFHNFHVVTAATSLPTRRTHTRARGDATFLLDPPQRYQSSDWVENLQSLLDSRIAKRISGHLWFNTAWAGAVTALFEFMPQWHIDAYISPLPHQLMSSALGLLLVFRTNAAYDRFWEARK 212
            P P  P +     T   + P            +  L  P RY S DW+  +QSL  S+I +RI  HL++NT WA  V AL+E+ P+         LPH +M+SAL LLLVFRTNA+YDRFWEARK
Sbjct:   31 PSPLQPSNILRPHTRKVTRPFPGGEADVPATVSLALKKPVRYSSKDWLYAIQSLPRSKIFERIQSHLFWNTLWAAGVAALWEYYPEL---PEFPVLPHSIMASALALLLVFRTNASYDRFWEARK 152          
BLAST of NO03G00770 vs. NCBI_GenBank
Match: OSX68971.1 (hypothetical protein BU14_2020s0001 [Porphyra umbilicalis])

HSP 1 Score: 96.7 bits (239), Expect = 1.000e-16
Identity = 57/129 (44.19%), Postives = 75/129 (58.14%), Query Frame = 0
Query:   86 SPCPTPPFHNFHVVTAATSLPTRRTHTRARGDATFLLDPPQRYQSSDWVENLQSLLDSRIAKRISGHLWFNTAWAGAVTALFEFMPQ---WHIDAYISPLPHQLMSSALGLLLVFRTNAAYDRFWEARK 212
            +P P+PP           ++   +T TRA       +  P+RY S+DW  NL SL  S + +RIS H+ FNT  A  V  L ++ P    WH    +SPLPH L+ +ALGLLL +RT+AAYDRFWEARK
Sbjct:   71 APTPSPP-----------AVAPTKTVTRA------AIQRPERYSSADWWRNLVSLPQSVVLRRISSHVAFNTIVATLVVFLHQYTPDEKIWH----LSPLPHVLLGTALGLLLSYRTSAAYDRFWEARK 178          
BLAST of NO03G00770 vs. NCBI_GenBank
Match: CEM01971.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 94.4 bits (233), Expect = 5.000e-16
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 0
Query:  122 LDPPQRYQSSDWVENLQSLLDSRIAKRISGHLWFNTAWAGAVTALFEF---MPQWHIDAYISPLPHQLMSSALGLLLVFRTNAAYDRFWEARK 212
            L  P RY S DW+  L+SL  S I  RI  HL +NT WA  +  ++E+   +P + I      LPH +MSSA+ LLLVFRTNA+YDRFWEARK
Sbjct:   76 LKKPVRYSSKDWIYALKSLPSSTIFTRIQSHLLWNTVWAALIAGIYEYDPNLPDFPI------LPHTIMSSAVALLLVFRTNASYDRFWEARK 162          
BLAST of NO03G00770 vs. NCBI_GenBank
Match: CBN74931.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.0 bits (232), Expect = 6.600e-16
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 0
Query:  129 QSSDWVENLQSLLDSRIAKRISGHLWFNTAWAGAVTALFEFMPQWHI-DAYISPLPHQLMSSALGLLLVFRTNAAYDRFWEARK 212
            + +DW  N+Q+L  SR+   I  HL++NTA+A  V+ +    PQ  I D ++SP+PH +MS ALGLLLVFRTNAAY+RFWEAR+
Sbjct:    5 KKNDWFANIQNLPKSRLLYNIKEHLFYNTAFAFCVSMVHYLTPQHIIDDLHVSPIPHSIMSGALGLLLVFRTNAAYNRFWEARQ 88          
BLAST of NO03G00770 vs. NCBI_GenBank
Match: KOO29552.1 (membrane protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 87.8 bits (216), Expect = 4.700e-14
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 0
Query:   97 HVVTAATSLPTRRTHTRARGDATFLLDPPQRYQSSDWVENLQSLLDSRIAKRISGHLWFNTAWAGAVTALFEFMPQWHIDAYISPLPHQLMSSALGLLLVFRTNAAYDRFWEARK 212
            H+  +ATS+  R      +    +  +  QRY ++DW +N+++L  S + KRI+  L FN       T +    P + +   IS LPH L+ SALGLLLVFRTNAAYDRFWEARK
Sbjct:   23 HLAPSATSIAARAGCVSCKFSPAY--ETTQRYAAADWAKNIRTLPQSTVLKRIASPLIFNVV---VTTIICAINPIFTVPRLIS-LPHTLLGSALGLLLVFRTNAAYDRFWEARK 131          
BLAST of NO03G00770 vs. NCBI_GenBank
Match: CEL96461.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 86.3 bits (212), Expect = 1.400e-13
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 0
Query:  134 VENLQSLLDSRIAKRISGHLWFNTAWAGAVTALFEFMPQWHIDAYISPLPHQLMSSALGLLLVFRTNAAYDRFWEARK 212
            +E L ++  SRI KRI G L   TAW+  +T LF   P+  + A  S LPH LMS A+GLLLVFRTNAAYDR+WE RK
Sbjct:   58 LECLTTVPLSRILKRIRGFLLVTTAWSVFITTLFAVAPKLSLFALSSSLPHSLMSGAMGLLLVFRTNAAYDRYWEGRK 135          
BLAST of NO03G00770 vs. NCBI_GenBank
Match: XP_005709103.1 (hypothetical protein Gasu_03530 [Galdieria sulphuraria] >EME32583.1 hypothetical protein Gasu_03530 [Galdieria sulphuraria])

HSP 1 Score: 82.0 bits (201), Expect = 2.600e-12
Identity = 44/86 (51.16%), Postives = 52/86 (60.47%), Query Frame = 0
Query:  126 QRYQSSDWVENLQSLLDSRIAKRISGHLWFNTAWAGAVTALFEFMPQWHIDAYISPLPHQLMSSALGLLLVFRTNAAYDRFWEARK 212
            +RY SSDW   L SL  S I  RI  HL+    W   V+ L      +      +P+PH L+ SA+GLLLVFRTNAAYDRFWEARK
Sbjct:   52 ERYTSSDWSRCLLSLPKSIILSRIRSHLF----WTCCVSFLVSLFDHFFKVPPFNPIPHTLLGSAMGLLLVFRTNAAYDRFWEARK 133          
BLAST of NO03G00770 vs. NCBI_GenBank
Match: XP_005833734.1 (hypothetical protein GUITHDRAFT_107530 [Guillardia theta CCMP2712] >EKX46754.1 hypothetical protein GUITHDRAFT_107530 [Guillardia theta CCMP2712])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 0
Query:  127 RYQSSDWVENLQSLLDSRIAKRISGHLWFNTAWAGAVTALFEFMPQWH-IDAYISPLPHQLMSSALGLLLVFRTNAAYDRFWEAR 211
            RY S DW+ NL S+  S +  R+S HL+ NT +A A+   +  MP    + A  S +PH L   ALGLLLVFRTN AY+RF + +
Sbjct:   70 RYASEDWLYNLLSIFSSAMFWRVSSHLFANTLFAVAIWCAYLLMPSLQAVCAGFSTVPHSLTGGALGLLLVFRTNTAYERFLDVK 154          
The following BLAST results are available for this feature:
BLAST of NO03G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29617.11.500e-3656.52Bestrophin-like protein [Nannochloropsis gaditana][more]
AFA52595.16.400e-1953.93hypothetical protein [Vaucheria litorea][more]
CEM06220.15.400e-1844.00unnamed protein product [Vitrella brassicaformis C... [more]
OSX68971.11.000e-1644.19hypothetical protein BU14_2020s0001 [Porphyra umbi... [more]
CEM01971.15.000e-1651.61unnamed protein product [Vitrella brassicaformis C... [more]
CBN74931.16.600e-1653.57conserved unknown protein [Ectocarpus siliculosus][more]
KOO29552.14.700e-1443.48membrane protein [Chrysochromulina sp. CCMP291][more]
CEL96461.11.400e-1356.41unnamed protein product [Vitrella brassicaformis C... [more]
XP_005709103.12.600e-1251.16hypothetical protein Gasu_03530 [Galdieria sulphur... [more]
XP_005833734.11.400e-1045.88hypothetical protein GUITHDRAFT_107530 [Guillardia... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00770.1NO03G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00770.1NO03G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00770 ID=NO03G00770|Name=NO03G00770|organism=Nannochloropsis oceanica|type=gene|length=833bp
ATGACAACAACAGGAACATCAGCCATGGATAGTGCAGACACGACGGCTCA
CGCAAGAGCCAGGAGAAGAAAATCACGCAGCACTCATGGCAGCAGCAGCA
TTTATCGGAGAATAGGAGGTTTCTTCCCCTCCTTTCCTACCACCCCTCCC
CTTCTGCTCCTCCTCTTCCTCCTCCCCTTCTGCCTTTCCCTCCATCGTGC
CATCCCTTCAGCCTTCCTTGGCCCCAGCCACACTTGTTTCGTGGCTCGCC
ACCGCTCTCCATGTCCAACACCTCCCTTTCATAACTTTCACGTCGTCACT
GCCGCCACCTCCCTCCCCACACGGCGCACCCACACCCGCGCCCGCGGCGA
CGCTACCTTCCTCCTCGATCCGCCCCAGCGATACCAATCTTCGGATTGGG
TCGAAAATTTGCAGTCTTTGCTCGACTCTCGGATTGCCAAGCGAATATCA
GGTCACCTGTGGTTCAATACAGCGTGGGCAGGGGCGGTAACGGCGCTGTT
TGAATTCATGCCCCAGTGGCACATTGATGCTTATATTTCCCCTCTTCCGC
ATCAGCTGATGTCCTCGGCTCTGGGGCTGTTGTTGGTGTTTCGGACCAAg
tacgtggggctggagggagggaaagtggggggaaaagggcgcacagtaca
ggggaaggtagacggaccccataaatcatactcaccattctcccatccac
tctcttaccctctttccctccgtcccccaatgcctttatctccagCGCCG
CCTACGACCGATTTTGGGAAGCTCGAAAATGTGGGGCAGCGTCACCAATA
ACTGCAGGAATTTGGCGCGAACAGGCCGCATAG
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protein sequence of NO03G00770.1

>NO03G00770.1-protein ID=NO03G00770.1-protein|Name=NO03G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MTTTGTSAMDSADTTAHARARRRKSRSTHGSSSIYRRIGGFFPSFPTTPP
LLLLLFLLPFCLSLHRAIPSAFLGPSHTCFVARHRSPCPTPPFHNFHVVT
AATSLPTRRTHTRARGDATFLLDPPQRYQSSDWVENLQSLLDSRIAKRIS
GHLWFNTAWAGAVTALFEFMPQWHIDAYISPLPHQLMSSALGLLLVFRTN
AAYDRFWEARKCGAASPITAGIWREQAA*
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Synonyms
Publications