NO03G00770.1, NO03G00770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00770.1
Unique NameNO03G00770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length687
Alignment locationchr3:249483..250315 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:249483..250315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00770.1 vs.
Match: EWM29617.1 (Bestrophin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 164.5 bits (415), Expect = 4.000e-37
Identity = 95/178 (53.37%), Postives = 111/178 (62.36%), Query Frame = 0 
Query:   34 IYRRIGGFFPSFPTTPPLLLLLFLLPFCLSLHRAIPSAFLGPSHTCFVARHRSPCPTPPFHNFHVVTAATSLPTRRTHTRARGDATFLLDPPQRYQSSDWVENLQSLLDSRIAKRISGHLWFNTAWAGAVTALFEFMPQWHIDAYISPLPHQLMSSALGLLLVFRTNAAYDRFWEARK 212
            + RR      S P    +L+   L+ FCL +  A   A + P H    +  R      P HN H   +           RA+   T LLDPPQRY+SSDW ENL+SL DSRI KRISGHL FNTAWA  VT ++E MPQWHI + ISP+PHQLMS+ALGLLLVFRTNAAYDRFWEARK
Sbjct:   62 VRRRRRRAMSSVPPRGQVLVAAHLVFFCL-VSCASSIALIFPFHAASSSFTRQHVMFRP-HNCHSNPSVNHFVNHIGCRRAKSHVTALLDPPQRYKSSDWAENLRSLFDSRIVKRISGHLLFNTAWATGVTGVYESMPQWHIGSDISPVPHQLMSTALGLLLVFRTNAAYDRFWEARK 237
The following BLAST results are available for this feature:
BLAST of NO03G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29617.14.000e-3753.37Bestrophin-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00770NO03G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00770.1NO03G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00770.1.cds1NO03G00770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00770.1.cds2NO03G00770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00770.1 ID=NO03G00770.1|Name=NO03G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=687bp
atgacaacaacaggaacatcagccatggatagtgcagacacgacggctca
cgcaagagccaggagaagaaaatcacgcagcactcatggcagcagcagca
tttatcggagaataggaggtttcttcccctcctttcctaccacccctccc
cttctgctcctcctcttcctcctccccttctgcctttccctccatcgtgc
catcccttcagccttccttggccccagccacacttgtttcgtggctcgcc
accgctctccatgtccaacacctccctttcataactttcacgtcgtcact
gccgccacctccctccccacacggcgcacccacacccgcgcccgcggcga
cgctaccttcctcctcgatccgccccagcgataccaatcttcggattggg
tcgaaaatttgcagtctttgctcgactctcggattgccaagcgaatatca
ggtcacctgtggttcaatacagcgtgggcaggggcggtaacggcgctgtt
tgaattcatgccccagtggcacattgatgcttatatttcccctcttccgc
atcagctgatgtcctcggctctggggctgttgttggtgtttcggaccaac
gccgcctacgaccgattttgggaagctcgaaaatgtggggcagcgtcacc
aataactgcaggaatttggcgcgaacaggccgcatag
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protein sequence of NO03G00770.1

>NO03G00770.1-protein ID=NO03G00770.1-protein|Name=NO03G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MTTTGTSAMDSADTTAHARARRRKSRSTHGSSSIYRRIGGFFPSFPTTPP
LLLLLFLLPFCLSLHRAIPSAFLGPSHTCFVARHRSPCPTPPFHNFHVVT
AATSLPTRRTHTRARGDATFLLDPPQRYQSSDWVENLQSLLDSRIAKRIS
GHLWFNTAWAGAVTALFEFMPQWHIDAYISPLPHQLMSSALGLLLVFRTN
AAYDRFWEARKCGAASPITAGIWREQAA*
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mRNA from alignment at chr3:249483..250315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00770.1 ID=NO03G00770.1|Name=NO03G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=833bp|location=Sequence derived from alignment at chr3:249483..250315- (Nannochloropsis oceanica)
ATGACAACAACAGGAACATCAGCCATGGATAGTGCAGACACGACGGCTCA
CGCAAGAGCCAGGAGAAGAAAATCACGCAGCACTCATGGCAGCAGCAGCA
TTTATCGGAGAATAGGAGGTTTCTTCCCCTCCTTTCCTACCACCCCTCCC
CTTCTGCTCCTCCTCTTCCTCCTCCCCTTCTGCCTTTCCCTCCATCGTGC
CATCCCTTCAGCCTTCCTTGGCCCCAGCCACACTTGTTTCGTGGCTCGCC
ACCGCTCTCCATGTCCAACACCTCCCTTTCATAACTTTCACGTCGTCACT
GCCGCCACCTCCCTCCCCACACGGCGCACCCACACCCGCGCCCGCGGCGA
CGCTACCTTCCTCCTCGATCCGCCCCAGCGATACCAATCTTCGGATTGGG
TCGAAAATTTGCAGTCTTTGCTCGACTCTCGGATTGCCAAGCGAATATCA
GGTCACCTGTGGTTCAATACAGCGTGGGCAGGGGCGGTAACGGCGCTGTT
TGAATTCATGCCCCAGTGGCACATTGATGCTTATATTTCCCCTCTTCCGC
ATCAGCTGATGTCCTCGGCTCTGGGGCTGTTGTTGGTGTTTCGGACCAAG
TACGTGGGGCTGGAGGGAGGGAAAGTGGGGGGAAAAGGGCGCACAGTACA
GGGGAAGGTAGACGGACCCCATAAATCATACTCACCATTCTCCCATCCAC
TCTCTTACCCTCTTTCCCTCCGTCCCCCAATGCCTTTATCTCCAGCGCCG
CCTACGACCGATTTTGGGAAGCTCGAAAATGTGGGGCAGCGTCACCAATA
ACTGCAGGAATTTGGCGCGAACAGGCCGCATAG
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Coding sequence (CDS) from alignment at chr3:249483..250315-

>NO03G00770.1 ID=NO03G00770.1|Name=NO03G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at chr3:249483..250315- (Nannochloropsis oceanica)
ATGACAACAACAGGAACATCAGCCATGGATAGTGCAGACACGACGGCTCA
CGCAAGAGCCAGGAGAAGAAAATCACGCAGCACTCATGGCAGCAGCAGCA
TTTATCGGAGAATAGGAGGTTTCTTCCCCTCCTTTCCTACCACCCCTCCC
CTTCTGCTCCTCCTCTTCCTCCTCCCCTTCTGCCTTTCCCTCCATCGTGC
CATCCCTTCAGCCTTCCTTGGCCCCAGCCACACTTGTTTCGTGGCTCGCC
ACCGCTCTCCATGTCCAACACCTCCCTTTCATAACTTTCACGTCGTCACT
GCCGCCACCTCCCTCCCCACACGGCGCACCCACACCCGCGCCCGCGGCGA
CGCTACCTTCCTCCTCGATCCGCCCCAGCGATACCAATCTTCGGATTGGG
TCGAAAATTTGCAGTCTTTGCTCGACTCTCGGATTGCCAAGCGAATATCA
GGTCACCTGTGGTTCAATACAGCGTGGGCAGGGGCGGTAACGGCGCTGTT
TGAATTCATGCCCCAGTGGCACATTGATGCTTATATTTCCCCTCTTCCGC
ATCAGCTGATGTCCTCGGCTCTGGGGCTGTTGTTGGTGTTTCGGACCAAC
GCCGCCTACGACCGATTTTGGGAAGCTCGAAAATGTGGGGCAGCGTCACC
AATAACTGCAGGAATTTGGCGCGAACAGGCCGCATAG
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Synonyms
Publications