NO03G00450, NO03G00450 (gene) Nannochloropsis oceanica

Overview
NameNO03G00450
Unique NameNO03G00450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1605
Alignment locationchr3:143040..144955 +

Link to JBrowse

Properties
Property NameValue
DescriptionSolute carrier family 31 (Copper transporters) member 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:143040..144955 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005375copper ion transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0035434copper ion transmembrane transport
Vocabulary: INTERPRO
TermDefinition
IPR007274Cop_transporter
Homology
BLAST of NO03G00450 vs. NCBI_GenBank
Match: XP_005855280.1 (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana CCMP526] >EKU21081.1 solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 229.9 bits (585), Expect = 8.300e-57
Identity = 133/193 (68.91%), Postives = 147/193 (76.17%), Query Frame = 0
Query:   60 VMNNGFSFMTKGGSCILYLFQGAVVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRG--VRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYFTMEMWEAYRVAKGKDEPSAMIAVGGGCGCGEEVIHVAA--AVGENGGAKGGADDPASSNNKV 249
            VMNNGF FM + G CILYLFQGAVVNTAGKYA A+IGTFFLAFSVEALRHFR WMRLRRA      VLA  E   E V G  +RAQVLPI LEA LFG HMF+AYL+MLLVMLYEWAIFISL+LGLAAGYFT EMWEAYRVA  K  PSA+ A+GGGCGC +EVIHVAA   +    G +   +   +S +KV
Sbjct:   67 VMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRA----TVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 255          
BLAST of NO03G00450 vs. NCBI_GenBank
Match: EWM29496.1 (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana])

HSP 1 Score: 229.9 bits (585), Expect = 8.300e-57
Identity = 133/193 (68.91%), Postives = 147/193 (76.17%), Query Frame = 0
Query:   60 VMNNGFSFMTKGGSCILYLFQGAVVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRG--VRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYFTMEMWEAYRVAKGKDEPSAMIAVGGGCGCGEEVIHVAA--AVGENGGAKGGADDPASSNNKV 249
            VMNNGF FM + G CILYLFQGAVVNTAGKYA A+IGTFFLAFSVEALRHFR WMRLRRA      VLA  E   E V G  +RAQVLPI LEA LFG HMF+AYL+MLLVMLYEWAIFISL+LGLAAGYFT EMWEAYRVA  K  PSA+ A+GGGCGC +EVIHVAA   +    G +   +   +S +KV
Sbjct:   77 VMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRA----TVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 265          
BLAST of NO03G00450 vs. NCBI_GenBank
Match: EWM29497.1 (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana])

HSP 1 Score: 214.9 bits (546), Expect = 2.800e-52
Identity = 126/187 (67.38%), Postives = 141/187 (75.40%), Query Frame = 0
Query:   66 SFMTKGGSCILYLFQGAVVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRG--VRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYFTMEMWEAYRVAKGKDEPSAMIAVGGGCGCGEEVIHVAA--AVGENGGAKGGADDPASSNNKV 249
            S  ++ G CILYLFQGAVVNTAGKYA A+IGTFFLAFSVEALRHFR WMRLRRA      VLA  E   E V G  +RAQVLPI LEA LFG HMF+AYL+MLLVMLYEWAIFISL+LGLAAGYFT EMWEAYRVA  K  PSA+ A+GGGCGC +EVIHVAA   +    G +   +   +S +KV
Sbjct:   25 SVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRA----TVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 207          
BLAST of NO03G00450 vs. NCBI_GenBank
Match: XP_001744728.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ90677.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 66.2 bits (160), Expect = 1.600e-7
Identity = 57/159 (35.85%), Postives = 78/159 (49.06%), Query Frame = 0
Query:   60 VMNNGFSFMTKGGSCILYLFQGAVVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRGVRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYFTMEMWE-------AYRVAKGKDEPSAMIAV 212
            VMN+GF        C ++LF   V++TAGKYA A+IGTF +    E  R    W R R         L A+E            +L  L  A  +G HM  AY +MLLVMLYE   F+ ++LGLA G F +   +       AY+   G+ +PSA+  +
Sbjct:   21 VMNDGFG--RAPSFCPIFLFHNVVIDTAGKYAIALIGTFCMGLFNELFR----WYRNR---------LEAQES--------TRPILQDLCVALSYGIHMLNAYFLMLLVMLYESLFFVMIILGLATGSFVVRQLQRHVRKVGAYQDLDGR-KPSALTPI 155          
BLAST of NO03G00450 vs. NCBI_GenBank
Match: CBJ28446.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.9 bits (159), Expect = 2.100e-7
Identity = 59/159 (37.11%), Postives = 77/159 (48.43%), Query Frame = 0
Query:   60 VMNNGFSFMTKGG-SCILYLFQGAVVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRGVRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYF-TMEMWEAYRVAKGKDEPSAMIAVGGGCG 217
            VM  GF   T     CIL+LF+GA V+T  KYA A +G F + F+ E +R+ R  M              AK  G      V+A         F F   MF+AY++MLLVMLYE+ I I ++ GLAAG+  T+ +    R A  KD       V G  G
Sbjct:   60 VMLMGFQAATSASVRCILFLFEGAGVDTKTKYAFAALGAFCMGFANEMIRYGRDRM--------------AKASGVCVGSDVKA--------TFAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLVTLRLSAGRRRAALKDGAKEASGVAGSSG 196          
BLAST of NO03G00450 vs. NCBI_GenBank
Match: CBJ32181.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.1 bits (157), Expect = 3.600e-7
Identity = 57/170 (33.53%), Postives = 81/170 (47.65%), Query Frame = 0
Query:   60 VMNNGFSFMTKGG-SCILYLFQGAVVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRGVRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYFTMEMWE------AYRVAKGKDEPSAMIAVGGGCGCGEEVI 223
            VM  GF   T    +CIL+LF+GA V+T  KYA A +G FF+ F+ E +R+ R      R  +T+   LA+                  L     F   +++AY++MLLVMLYE+ I I ++ GLA G+     W       A R A  K  P  M + G  C C  + +
Sbjct:   33 VMLMGFQSATSASVNCILFLFEGAGVDTKTKYAFAALGAFFMGFANEMIRYGR-----DRMAKTSDVSLASD-----------------LKMTAAFAVQIYLAYMLMLLVMLYEYVILIMIISGLATGHLLTLRWSAGRRRAALRDAGAKTPPEVMGSSGTPC-CNTDTV 179          
The following BLAST results are available for this feature:
BLAST of NO03G00450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
XP_005855280.18.300e-5768.91solute carrier family 31 (copper transporters) mem... [more]
EWM29496.18.300e-5768.91solute carrier family 31 (copper transporters) mem... [more]
EWM29497.12.800e-5267.38solute carrier family 31 (copper transporters) mem... [more]
XP_001744728.11.600e-735.85hypothetical protein [Monosiga brevicollis MX1] >E... [more]
CBJ28446.12.100e-737.11conserved unknown protein [Ectocarpus siliculosus][more]
CBJ32181.13.600e-733.53conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005873NSK005873Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00450.1NO03G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G00450.2NO03G00450.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571372gene_1220Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100287g8gene1131Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00450.1NO03G00450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G00450.2NO03G00450.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00450 ID=NO03G00450|Name=NO03G00450|organism=Nannochloropsis oceanica|type=gene|length=1605bp
CGCCTCTCGGAGTTTGGCACATGTCAGTCTGTACCGGGTCTTGCACGTGT
TTGGGGCGAGTATTTGCTCCTGCAGCCTAGCATCTATGATTGgtgcgttc
tgatagtgaccgtggagcggttgtggtacctgtgcccgatttcatataca
tccaccaacctcctcccgcccatgccccagGGGAAGCGCTCACCCAGCGT
GTGTCTCTTCCTACCCAAGCCTCCCTTATCATCTCTCTACTTGCCCTCAA
GTCGGGTTTAATTGTGAATgtgggaaactttgttggtgggggggatgcca
gcagctctttcgcatctcacctctcctccccccttccctttctccgtctc
tctccttccctccctttcttcccccagATGGACCCCGGCATGGATATGGG
TGGCATGGGTGGTATGGATATGGGCGAGGGAAATGGATACTGCCTGGGCG
ACGGGATGGTGATGAATAATGGTTTCAGCTTCATGACAAAAgtgagcgaa
gaggggaggaaaggagtgagggagagtgggaaggaatgagaaggagccag
atgtgggtatgcgggaattccatgtatcaaagaaaaggcgtaggtatcat
cgctgctcattttcaagtattcaaggcttctctttgcattgctccgtatt
cttccctttcctcctcctcactttcccctccccccttctcactttcccca
ccctctcctttagGGCGGTTCCTGCATCCTGTACCTGTTTCAAGGTGCCG
TTGTCAACACTGCGGGCAAGTATGCTGCTGCCATCATCGGGACTTTCTTC
CTCGCTTTTTCCGTGGAGGCCTTGCGTCACTTCCGATTTTGGATGCGTCT
TCGCCGGGCGCGTCAGACGACAGCGGCTGTTTTGGCGGCGAAGGAGGGAG
GAGAGGAAAAAGTAAGGGGTGTGCGCGCACAGGTGCTCCCCATTCTTTTG
GAAGCCTTCTTGTTTGGCTCGCACATGTTCATCGCCTACTTGGTCATGCT
CCTGGTGATGCTGTATGAGTGGGCTATTTTCATTTCGTTGGTCTTGGGCT
TGGCGGCCGGGTATTTCACCATGGAGATGTGGGAGGCGTACAGgtgagga
gagggaaggagggagggtgggttggcgggagggagggagggcggtttcaa
tcccttagcattgactcatgcactttcaattattgtcattgtcgctatat
cttcgaaattgtaatagAGTGGCGAAAGGAAAGGATGAACCCAGCGCAAT
GATTGCGGTGGGTGGGGGCTGTGGGTGCGGGGAGGAGGTGATTCACGTAG
CTGCTGCCGTAGGTGAGAATGGAGGTGCCAAAGGAGGAGCGGACGATCCC
GCGAGCTCGAATAATAAGGTGTAGGAGGAAGGGAGGGGTCAAGAGGTGGG
AAAACATGGCTGGATCTGGGCGCACTATTTAGAATCTGCAGCTGCCTTTG
CTGATATTGCAGCTGCCGCTGCTGCTGCTGGCCCTCCCTGGTGGGGAAGG
GGGGAGGCTGGAAGATAGGAGGAGAGGGGGGGAAATTAAAAGAACCCTTG
AGAATGGGAAAGACAGGTCACAATGGAATACAATGTATGTGAAGAGAAAA
GGACA
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protein sequence of NO03G00450.1

>NO03G00450.1-protein ID=NO03G00450.1-protein|Name=NO03G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MCLSLSSPYSLFFHFIIRRERKSCLGPQRSVERTSSSCSRRLSSTGKRLA
KMDPGMDMGGMGGMDMGEGNGYCLGDGMVMNNGFSFMTKGGSCILYLFQG
AVVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKE
GGEEKVRGVRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVL
GLAAGYFTMEMWEAYRVAKGKDEPSAMIAVGGGCGCGEEVIHVAAAVGEN
GGAKGGADDPASSNNKV*
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protein sequence of NO03G00450.2

>NO03G00450.2-protein ID=NO03G00450.2-protein|Name=NO03G00450.2|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MIGEALTQRVSLPTQASLIISLLALKSGLIVNMDPGMDMGGMGGMDMGEG
NGYCLGDGMVMNNGFSFMTKGGSCILYLFQGAVVNTAGKYAAAIIGTFFL
AFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRGVRAQVLPILLE
AFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYFTMEMWEAYRVAK
GKDEPSAMIAVGGGCGCGEEVIHVAAAVGENGGAKGGADDPASSNNKV*
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Synonyms
Publications