NO03G00450, NO03G00450 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G00450 vs. NCBI_GenBank
Match: XP_005855280.1 (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana CCMP526] >EKU21081.1 solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 229.9 bits (585), Expect = 8.300e-57 Identity = 133/193 (68.91%), Postives = 147/193 (76.17%), Query Frame = 0 Query: 60 VMNNGFSFMTKGGSCILYLFQGAVVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRG--VRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYFTMEMWEAYRVAKGKDEPSAMIAVGGGCGCGEEVIHVAA--AVGENGGAKGGADDPASSNNKV 249 VMNNGF FM + G CILYLFQGAVVNTAGKYA A+IGTFFLAFSVEALRHFR WMRLRRA VLA E E V G +RAQVLPI LEA LFG HMF+AYL+MLLVMLYEWAIFISL+LGLAAGYFT EMWEAYRVA K PSA+ A+GGGCGC +EVIHVAA + G + + +S +KV Sbjct: 67 VMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRA----TVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 255
BLAST of NO03G00450 vs. NCBI_GenBank
Match: EWM29496.1 (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana]) HSP 1 Score: 229.9 bits (585), Expect = 8.300e-57 Identity = 133/193 (68.91%), Postives = 147/193 (76.17%), Query Frame = 0 Query: 60 VMNNGFSFMTKGGSCILYLFQGAVVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRG--VRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYFTMEMWEAYRVAKGKDEPSAMIAVGGGCGCGEEVIHVAA--AVGENGGAKGGADDPASSNNKV 249 VMNNGF FM + G CILYLFQGAVVNTAGKYA A+IGTFFLAFSVEALRHFR WMRLRRA VLA E E V G +RAQVLPI LEA LFG HMF+AYL+MLLVMLYEWAIFISL+LGLAAGYFT EMWEAYRVA K PSA+ A+GGGCGC +EVIHVAA + G + + +S +KV Sbjct: 77 VMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRA----TVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 265
BLAST of NO03G00450 vs. NCBI_GenBank
Match: EWM29497.1 (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana]) HSP 1 Score: 214.9 bits (546), Expect = 2.800e-52 Identity = 126/187 (67.38%), Postives = 141/187 (75.40%), Query Frame = 0 Query: 66 SFMTKGGSCILYLFQGAVVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRG--VRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYFTMEMWEAYRVAKGKDEPSAMIAVGGGCGCGEEVIHVAA--AVGENGGAKGGADDPASSNNKV 249 S ++ G CILYLFQGAVVNTAGKYA A+IGTFFLAFSVEALRHFR WMRLRRA VLA E E V G +RAQVLPI LEA LFG HMF+AYL+MLLVMLYEWAIFISL+LGLAAGYFT EMWEAYRVA K PSA+ A+GGGCGC +EVIHVAA + G + + +S +KV Sbjct: 25 SVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRA----TVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 207
BLAST of NO03G00450 vs. NCBI_GenBank
Match: XP_001744728.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ90677.1 predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 66.2 bits (160), Expect = 1.600e-7 Identity = 57/159 (35.85%), Postives = 78/159 (49.06%), Query Frame = 0 Query: 60 VMNNGFSFMTKGGSCILYLFQGAVVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRGVRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYFTMEMWE-------AYRVAKGKDEPSAMIAV 212 VMN+GF C ++LF V++TAGKYA A+IGTF + E R W R R L A+E +L L A +G HM AY +MLLVMLYE F+ ++LGLA G F + + AY+ G+ +PSA+ + Sbjct: 21 VMNDGFG--RAPSFCPIFLFHNVVIDTAGKYAIALIGTFCMGLFNELFR----WYRNR---------LEAQES--------TRPILQDLCVALSYGIHMLNAYFLMLLVMLYESLFFVMIILGLATGSFVVRQLQRHVRKVGAYQDLDGR-KPSALTPI 155
BLAST of NO03G00450 vs. NCBI_GenBank
Match: CBJ28446.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 65.9 bits (159), Expect = 2.100e-7 Identity = 59/159 (37.11%), Postives = 77/159 (48.43%), Query Frame = 0 Query: 60 VMNNGFSFMTKGG-SCILYLFQGAVVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRGVRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYF-TMEMWEAYRVAKGKDEPSAMIAVGGGCG 217 VM GF T CIL+LF+GA V+T KYA A +G F + F+ E +R+ R M AK G V+A F F MF+AY++MLLVMLYE+ I I ++ GLAAG+ T+ + R A KD V G G Sbjct: 60 VMLMGFQAATSASVRCILFLFEGAGVDTKTKYAFAALGAFCMGFANEMIRYGRDRM--------------AKASGVCVGSDVKA--------TFAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLVTLRLSAGRRRAALKDGAKEASGVAGSSG 196
BLAST of NO03G00450 vs. NCBI_GenBank
Match: CBJ32181.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 65.1 bits (157), Expect = 3.600e-7 Identity = 57/170 (33.53%), Postives = 81/170 (47.65%), Query Frame = 0 Query: 60 VMNNGFSFMTKGG-SCILYLFQGAVVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRGVRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYFTMEMWE------AYRVAKGKDEPSAMIAVGGGCGCGEEVI 223 VM GF T +CIL+LF+GA V+T KYA A +G FF+ F+ E +R+ R R +T+ LA+ L F +++AY++MLLVMLYE+ I I ++ GLA G+ W A R A K P M + G C C + + Sbjct: 33 VMLMGFQSATSASVNCILFLFEGAGVDTKTKYAFAALGAFFMGFANEMIRYGR-----DRMAKTSDVSLASD-----------------LKMTAAFAVQIYLAYMLMLLVMLYEYVILIMIISGLATGHLLTLRWSAGRRRAALRDAGAKTPPEVMGSSGTPC-CNTDTV 179 The following BLAST results are available for this feature:
BLAST of NO03G00450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G00450 ID=NO03G00450|Name=NO03G00450|organism=Nannochloropsis oceanica|type=gene|length=1605bpback to top protein sequence of NO03G00450.1 >NO03G00450.1-protein ID=NO03G00450.1-protein|Name=NO03G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=268bpback to top protein sequence of NO03G00450.2 >NO03G00450.2-protein ID=NO03G00450.2-protein|Name=NO03G00450.2|organism=Nannochloropsis oceanica|type=polypeptide|length=249bpback to top Synonyms
Publications
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