NO03G00450.2, NO03G00450.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00450.2
Unique NameNO03G00450.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1063
Alignment locationchr3:143351..144955 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:143351..144955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00450.2 vs.
Match: XP_005855280.1 (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana CCMP526]; EKU21081.1 solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 252.3 bits (643), Expect = 1.600e-63
Identity = 148/223 (66.37%), Postives = 167/223 (74.89%), Query Frame = 0 
Query:   31 VNMD-PGMDMGGMGGMDMGEGNGYCLGDGMVMNNGFSFMTKGGSCILYLFQGAVVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRG--VRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYFTMEMWEAYRVAKGKDEPSAMIAVGGGCGCGEEVIHVAA--AVGENGGAKGGADDPASSNNKV 249
            ++MD PGMDMGGMG     +  G+C G+G VMNNGF FM + G CILYLFQGAVVNTAGKYA A+IGTFFLAFSVEALRHFR WMRLRRA      VLA  E   E V G  +RAQVLPI LEA LFG HMF+AYL+MLLVMLYEWAIFISL+LGLAAGYFT EMWEAYRVA  K  PSA+ A+GGGCGC +EVIHVAA   +    G +   +   +S +KV
Sbjct:   42 MDMDMPGMDMGGMG-----DSGGFCQGEGSVMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRA----TVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 255
The following BLAST results are available for this feature:
BLAST of NO03G00450.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855280.11.600e-6366.37solute carrier family 31 (copper transporters) mem... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00450NO03G00450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00450.2NO03G00450.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00450.2.cds1NO03G00450.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00450.2.cds2NO03G00450.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00450.2.cds3NO03G00450.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00450.2.cds4NO03G00450.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00450.2.cds5NO03G00450.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00450.2 ID=NO03G00450.2|Name=NO03G00450.2|organism=Nannochloropsis oceanica|type=mRNA|length=1063bp
CGCCTCTCGGAGTTTGGCACATGTCAGTCTGTACCGGGTCTTGCACGTGT
TTGGGGCGAGTATTTGCTCCTGCAGCCTAGCATCTATGATTGGGGAAGCG
CTCACCCAGCGTGTGTCTCTTCCTACCCAAGCCTCCCTTATCATCTCTCT
ACTTGCCCTCAAGTCGGGTTTAATTGTGAATATGGACCCCGGCATGGATA
TGGGTGGCATGGGTGGTATGGATATGGGCGAGGGAAATGGATACTGCCTG
GGCGACGGGATGGTGATGAATAATGGTTTCAGCTTCATGACAAAAGGCGG
TTCCTGCATCCTGTACCTGTTTCAAGGTGCCGTTGTCAACACTGCGGGCA
AGTATGCTGCTGCCATCATCGGGACTTTCTTCCTCGCTTTTTCCGTGGAG
GCCTTGCGTCACTTCCGATTTTGGATGCGTCTTCGCCGGGCGCGTCAGAC
GACAGCGGCTGTTTTGGCGGCGAAGGAGGGAGGAGAGGAAAAAGTAAGGG
GTGTGCGCGCACAGGTGCTCCCCATTCTTTTGGAAGCCTTCTTGTTTGGC
TCGCACATGTTCATCGCCTACTTGGTCATGCTCCTGGTGATGCTGTATGA
GTGGGCTATTTTCATTTCGTTGGTCTTGGGCTTGGCGGCCGGGTATTTCA
CCATGGAGATGTGGGAGGCGTACAGAGTGGCGAAAGGAAAGGATGAACCC
AGCGCAATGATTGCGGTGGGTGGGGGCTGTGGGTGCGGGGAGGAGGTGAT
TCACGTAGCTGCTGCCGTAGGTGAGAATGGAGGTGCCAAAGGAGGAGCGG
ACGATCCCGCGAGCTCGAATAATAAGGTGTAGGAGGAAGGGAGGGGTCAA
GAGGTGGGAAAACATGGCTGGATCTGGGCGCACTATTTAGAATCTGCAGC
TGCCTTTGCTGATATTGCAGCTGCCGCTGCTGCTGCTGGCCCTCCCTGGT
GGGGAAGGGGGGAGGCTGGAAGATAGGAGGAGAGGGGGGGAAATTAAAAG
AACCCTTGAGAATGGGAAAGACAGGTCACAATGGAATACAATGTATGTGA
AGAGAAAAGGACA
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protein sequence of NO03G00450.2

>NO03G00450.2-protein ID=NO03G00450.2-protein|Name=NO03G00450.2|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MIGEALTQRVSLPTQASLIISLLALKSGLIVNMDPGMDMGGMGGMDMGEG
NGYCLGDGMVMNNGFSFMTKGGSCILYLFQGAVVNTAGKYAAAIIGTFFL
AFSVEALRHFRFWMRLRRARQTTAAVLAAKEGGEEKVRGVRAQVLPILLE
AFLFGSHMFIAYLVMLLVMLYEWAIFISLVLGLAAGYFTMEMWEAYRVAK
GKDEPSAMIAVGGGCGCGEEVIHVAAAVGENGGAKGGADDPASSNNKV*
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mRNA from alignment at chr3:143351..144955+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00450.2 ID=NO03G00450.2|Name=NO03G00450.2|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp|location=Sequence derived from alignment at chr3:143351..144955+ (Nannochloropsis oceanica)
CGCCTCTCGGAGTTTGGCACATGTCAGTCTGTACCGGGTCTTGCACGTGT
TTGGGGCGAGTATTTGCTCCTGCAGCCTAGCATCTATGATTGGTGCGTTC
TGATAGTGACCGTGGAGCGGTTGTGGTACCTGTGCCCGATTTCATATACA
TCCACCAACCTCCTCCCGCCCATGCCCCAGGGGAAGCGCTCACCCAGCGT
GTGTCTCTTCCTACCCAAGCCTCCCTTATCATCTCTCTACTTGCCCTCAA
GTCGGGTTTAATTGTGAATGTGGGAAACTTTGTTGGTGGGGGGGATGCCA
GCAGCTCTTTCGCATCTCACCTCTCCTCCCCCCTTCCCTTTCTCCGTCTC
TCTCCTTCCCTCCCTTTCTTCCCCCAGATGGACCCCGGCATGGATATGGG
TGGCATGGGTGGTATGGATATGGGCGAGGGAAATGGATACTGCCTGGGCG
ACGGGATGGTGATGAATAATGGTTTCAGCTTCATGACAAAAGTGAGCGAA
GAGGGGAGGAAAGGAGTGAGGGAGAGTGGGAAGGAATGAGAAGGAGCCAG
ATGTGGGTATGCGGGAATTCCATGTATCAAAGAAAAGGCGTAGGTATCAT
CGCTGCTCATTTTCAAGTATTCAAGGCTTCTCTTTGCATTGCTCCGTATT
CTTCCCTTTCCTCCTCCTCACTTTCCCCTCCCCCCTTCTCACTTTCCCCA
CCCTCTCCTTTAGGGCGGTTCCTGCATCCTGTACCTGTTTCAAGGTGCCG
TTGTCAACACTGCGGGCAAGTATGCTGCTGCCATCATCGGGACTTTCTTC
CTCGCTTTTTCCGTGGAGGCCTTGCGTCACTTCCGATTTTGGATGCGTCT
TCGCCGGGCGCGTCAGACGACAGCGGCTGTTTTGGCGGCGAAGGAGGGAG
GAGAGGAAAAAGTAAGGGGTGTGCGCGCACAGGTGCTCCCCATTCTTTTG
GAAGCCTTCTTGTTTGGCTCGCACATGTTCATCGCCTACTTGGTCATGCT
CCTGGTGATGCTGTATGAGTGGGCTATTTTCATTTCGTTGGTCTTGGGCT
TGGCGGCCGGGTATTTCACCATGGAGATGTGGGAGGCGTACAGGTGAGGA
GAGGGAAGGAGGGAGGGTGGGTTGGCGGGAGGGAGGGAGGGCGGTTTCAA
TCCCTTAGCATTGACTCATGCACTTTCAATTATTGTCATTGTCGCTATAT
CTTCGAAATTGTAATAGAGTGGCGAAAGGAAAGGATGAACCCAGCGCAAT
GATTGCGGTGGGTGGGGGCTGTGGGTGCGGGGAGGAGGTGATTCACGTAG
CTGCTGCCGTAGGTGAGAATGGAGGTGCCAAAGGAGGAGCGGACGATCCC
GCGAGCTCGAATAATAAGGTGTAGGAGGAAGGGAGGGGTCAAGAGGTGGG
AAAACATGGCTGGATCTGGGCGCACTATTTAGAATCTGCAGCTGCCTTTG
CTGATATTGCAGCTGCCGCTGCTGCTGCTGGCCCTCCCTGGTGGGGAAGG
GGGGAGGCTGGAAGATAGGAGGAGAGGGGGGGAAATTAAAAGAACCCTTG
AGAATGGGAAAGACAGGTCACAATGGAATACAATGTATGTGAAGAGAAAA
GGACA
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Coding sequence (CDS) from alignment at chr3:143351..144955+

>NO03G00450.2 ID=NO03G00450.2|Name=NO03G00450.2|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at chr3:143351..144955+ (Nannochloropsis oceanica)
ATGATTGGGGAAGCGCTCACCCAGCGTGTGTCTCTTCCTACCCAAGCCTC
CCTTATCATCTCTCTACTTGCCCTCAAGTCGGGTTTAATTGTGAATATGG
ACCCCGGCATGGATATGGGTGGCATGGGTGGTATGGATATGGGCGAGGGA
AATGGATACTGCCTGGGCGACGGGATGGTGATGAATAATGGTTTCAGCTT
CATGACAAAAGGCGGTTCCTGCATCCTGTACCTGTTTCAAGGTGCCGTTG
TCAACACTGCGGGCAAGTATGCTGCTGCCATCATCGGGACTTTCTTCCTC
GCTTTTTCCGTGGAGGCCTTGCGTCACTTCCGATTTTGGATGCGTCTTCG
CCGGGCGCGTCAGACGACAGCGGCTGTTTTGGCGGCGAAGGAGGGAGGAG
AGGAAAAAGTAAGGGGTGTGCGCGCACAGGTGCTCCCCATTCTTTTGGAA
GCCTTCTTGTTTGGCTCGCACATGTTCATCGCCTACTTGGTCATGCTCCT
GGTGATGCTGTATGAGTGGGCTATTTTCATTTCGTTGGTCTTGGGCTTGG
CGGCCGGGTATTTCACCATGGAGATGTGGGAGGCGTACAGAGTGGCGAAA
GGAAAGGATGAACCCAGCGCAATGATTGCGGTGGGTGGGGGCTGTGGGTG
CGGGGAGGAGGTGATTCACGTAGCTGCTGCCGTAGGTGAGAATGGAGGTG
CCAAAGGAGGAGCGGACGATCCCGCGAGCTCGAATAATAAGGTGTAG
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Synonyms
Publications