NO03G00280, NO03G00280 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G00280 vs. NCBI_GenBank
Match: EWM29563.1 (Pentatricopeptide repeat contining protein [Nannochloropsis gaditana]) HSP 1 Score: 916.4 bits (2367), Expect = 7.400e-263 Identity = 514/854 (60.19%), Postives = 587/854 (68.74%), Query Frame = 0 Query: 112 LREINNGINFWGKQRDFDKVLFLVQKLEDEGLQPNIYTFHALLNAAVSCRRGEAETKAVWQTMTEEHGLAPTAVTYNILLKQFFGRGSPSAQRQALAVLDEMRHEGVEPDVLTFNELINICVEGGDMKXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLKGNLLSAFETVKEMQAQALPLSTYSCNVLADACIRCGQPARALKLYKGFEMSQAGAGAGGLEGERAGGRSLDLKSFNIMLKAHREMGCLDGALGTFAALKARGLEADAITYNTLVDAYCKAQQPMGARLLIKEMKARKVGVTHQTLHPLIQEEITSKGASLEEALRLAAEVLGEHGLKKSDVTVCTVMEAMLAMERPADAIQAFIQSFFE----------GKG----EKGKEER-VAPCARATPSLVAYNGLIKAYREYVLGLDLEGDAGDMSPLRLLAFPADGSAPVLTIATTPHQVFEAILSLPSYLRA-SATAPTTSANRPIP---------ASSPTSPRSH--SGPDSITYNVLMDFAAELGEVVALEKLQEGRIRAGFALDHYVIHSLMKAHAVRGDLRGVTEAKEKMEALRVPANERTFSVLVLSLLRCGQVDKAELLLRNALSRQLYVHDSLFVAFIQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREIFEAFKTRXXXXXXXXXXXXXXXXXXXXXXXXXGKWTVAVWSAWMGALARTGDLDAVLGVWEEMTTSPAMGLRPTRSTYVQVVRAACEAGEVEVALEWVGRMRSKKWLPDVRVYNCLIYALLARERVKEGGK-RREEGRQGLLIEVLGMMSRDGVVPNAITLRAKSGVMRILASRMRSVSDTMVGKLKMLALGKQW 938 L EINN INFW KQR+FD+VL L QK+E EGL+PNIYTFHALLNAA++CRRGEAET AVWQ MT K+FFGRG+P+AQRQALAVL+EMR GVEPDVLTFNELINICVEGGDMK GHGLKGNL+ AFETVK M+AQALPLSTYSCNVLADACIRCGQP+RAL LY+ FE AG GE GR+LDLKSFNIM+KA+R +G ++GA AL+ RG +AD +TYNTLVD +CKAQ GAR LI++MK V VTHQT+HPL+QEEI + G S EEAL LA +LG HGLK++DVT+CTVMEAML++ERP DAIQ F++SFF GKG E+GKE P R PSLVA+NGLIKAYR+YV+GLD+EG+ GDM+PL LL FP +G +P+ T ATTP V EA + LPSYL+ +A P A+ + SH GPDSITYN+LMDFA ELG+V ALE + R AGFA+DHYVIHS MKAHAVRG+L GVTEAKEKMEALRVPANERTFSVLVLSLLRCGQV+KAELLL+NAL+RQ YVHDSLFVAFIQ+ REIFEAFK R GKW AVWSAWM ALAR GDLD VL W+EMT P++G+RPTRSTY QV+RAAC AGEVE AL+WV MR KKW+PDVRVYN LIYA L +E K K + G Q LL+EVL MM RDGV PNAITLRAK GVMR+LASRMR+VSDTMVGKLKMLAL KQW Sbjct: 116 LWEINNEINFWSKQRNFDQVLALAQKVETEGLRPNIYTFHALLNAAIACRRGEAETLAVWQKMTXXXXXXXXXXXXXXXXKRFFGRGTPAAQRQALAVLNEMRQGGVEPDVLTFNELINICVEGGDMKAAAGLMQAMVHRGMAPDTRTYTTLIKGHGLKGNLMDAFETVKTMRAQALPLSTYSCNVLADACIRCGQPSRALALYREFEAEADEAG-----GE--AGRTLDLKSFNIMIKAYRGLGHVEGARAALHALERRGFKADTVTYNTLVDLHCKAQNLGGARSLIEKMKENAVPVTHQTIHPLVQEEIIAHGVSWEEALDLATALLGAHGLKQNDVTICTVMEAMLSLERPRDAIQVFVRSFFAPREGVSPAEGGKGRERSERGKEAMGRVPRPRVIPSLVAFNGLIKAYRDYVVGLDMEGEGGDMAPLPLLVFPPNGGSPLWTQATTPRAVLEAAVHLPSYLQTLAAITPXXXXXXXXXXXXXXXAPGAARRSFGTSHLFGGPDSITYNILMDFAGELGDVEALETIHAARNAAGFAIDHYVIHSYMKAHAVRGNLAGVTEAKEKMEALRVPANERTFSVLVLSLLRCGQVEKAELLLKNALARQTYVHDSLFVAFIQH--------YTSAPSSSQQPSAPEKPTSRLVAAREIFEAFKAR----------RNPGAPMPAAPQQSHGKWAGAVWSAWMAALARKGDLDGVLAAWKEMTLCPSLGVRPTRSTYAQVIRAACVAGEVETALQWVQNMRGKKWVPDVRVYNGLIYACLEKEMGKADRKGSKGGGGQRLLVEVLEMMERDGVQPNAITLRAKEGVMRVLASRMRAVSDTMVGKLKMLALSKQW 944
BLAST of NO03G00280 vs. NCBI_GenBank
Match: XP_005715752.1 (unnamed protein product [Chondrus crispus] >CDF35933.1 unnamed protein product [Chondrus crispus]) HSP 1 Score: 83.2 bits (204), Expect = 4.800e-12 Identity = 85/326 (26.07%), Postives = 130/326 (39.88%), Query Frame = 0 Query: 112 LREINNGINFWGKQRDFDKVLFLVQKLE-DEGLQPNIYTFHALLNAAVSCRRGEAETKAVWQTMTEEHGLAPTAVTYNILLKQFFG----------------------------------RGSPSAQRQALAVLDEMRHEGVEPDVLTFNELINICVEGGDMKXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLKGN--LLSAFETVKEMQAQALPLSTYSCNVLADACIRCGQPARALKLYKGFEMSQAGAGAGGLEGERAG--------GRSLDLKSFNIMLKAHREMGC-LDGALGTFAALKARGLEADAITYNTLVDAYCKAQ 392 +R+ N I+ + ++RD + L + +L+ + N++T++A++NA V C + A W+ M ++ G+ P VT+N +LK FG S R A V ++MR +EPD TF L D+ H L + L ++ E AL +S + N +ADA IRCG PARA+ L + + G G + R S D+++FN+ LKA RE G A T +K LEAD IT TL D C+ + Sbjct: 101 VRDYNRRISNYARRRDLNGALRTLDELDRTPKVSRNLFTYNAVINALVMCSQ-HARADEFWREM-QDSGIEPNLVTFNTMLKSCFGGMDEDVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGRVRDAQEVYEKMRQLDIEPDAYTFCTLAKQARHQCDVSMLDALLL--------------------HQLHHHTILQQRSDSDNEDPDLALQISPVAYNTIADAYIRCGYPARAINL-----LEKMRDGRGKPDDSRPTLPTPKDTIPVSPDVQTFNVRLKALREAGAPSSDAFATLEEMKTLELEADHITLLTLADLCCRRE 399
BLAST of NO03G00280 vs. NCBI_GenBank
Match: CEM00795.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 70.1 bits (170), Expect = 4.200e-8 Identity = 126/561 (22.46%), Postives = 217/561 (38.68%), Query Frame = 0 Query: 170 VWQTMTEEHGLAPTAVTYNILLKQFFGRGSPSAQRQALAVLDEMRHEGVEPDVLTFNELINICVEGGDMKXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLKGNLLSAFETVKEMQAQALPLSTYSCNVLADACIRCGQPARALKLY-KGFEMSQAGAGAGGLEGERAGGRSLDLKSFNIMLKAHREMGCLDGALGTFAALKARGLEADAITYNTLVDAYCKAQQPMGARLLIKEMKARKVGVTHQTLHPLIQE-EITSKGASLEEALRLAAEVLGEHGLKKS----DVTVCTVMEAMLAMERPADAIQAF-----------IQSFFEGKGEKGKEERVAPCARATPSLVAYNGLIKAYREYVLGLDLEGDAGDMSPLRLLAFPADGSAPVLTIA-TTPHQVFEAILSLPSYLRASATAPTTSANRPIPASSPTSPRSHSGPDSITYNVLMDFAAELGEVVALEKLQEGRIRAGFALDHYVIHSLMKAHAVRGDLRGVTEAKEKMEALRVPANERTFSVLVLSLLRCGQVDKA-----ELLLRNALSRQLYVHDSLFVAFIQ 708 V QTM + HG++ + L+K F S +AL + D M+ + VEPD LIN E D + K + +A + ++EM + + N + C+ GQ A L + +M + G D+ SFNI+ K + + G DGAL T A + GL+ + I+YNT++DA ++++ A L+ EM + + T LI+ +G + E L A E L G+ +S +V +ME+ L M+ + ++ F + ++ G+ R+ C L + L Y + LD + GD+ + A S V T+ TT + F + +R T + A PD I ++VL+ E G++ K+ E F D V ++L+ + ++ +M ++ V TFS+LV + +DKA ++ ++ L + V+ SL A I+ Sbjct: 206 VIQTM-KAHGVSCPFGFFQALMKIF---SSKQMYDKALGLYDLMKQQNVEPDAPMLRCLINFAFECND-PVKVEVFFAALKKHELPSMKSYTTLIRAYSKKNDAWAALKVLREMLDCGVETDSLVLNSVLSTCVGAGQLQIAETLVNESVQMCEEGQTL-----------LADIVSFNILSKGYAQKGDFDGALKTLRASERAGLQPNDISYNTVIDAAVRSKRLDEAWGLVLEMGEKGIEADKYTCSILIKGLHNIGQGPAREAHLNTALEYLKRLGVSESSRLHEVVSFCLMESCLHMKDLSRTLEVFRHIQQQKVKVSVVTYGNVMKALGQAGRLRECFELWEGL-KHTDLEPTAILYGILLDACINNGDLPRAMQVFEEAKSSDAVNTVMYTTILKGFARTKQVDEAMRFYHQMLTDAKQGKDVA-----------PDLIAFSVLIQAHVEAGDMSGAFKVVEDMKGHHFKPDDIVFNTLLNGCFKQSNVELGERLFAEMLSVSVKPTAVTFSILVKLYGKARMLDKAFQMIDDMEMKFHLRPSVLVYTSLIQACIR 738
BLAST of NO03G00280 vs. NCBI_GenBank
Match: XP_022763475.1 (pentatricopeptide repeat-containing protein At5g02860-like [Durio zibethinus]) HSP 1 Score: 69.3 bits (168), Expect = 7.200e-8 Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 0 Query: 119 INFWGKQRDFDKVLFLVQKLEDEGLQPNIYTFHALLNAAVSCRRGEAETKAVWQTMTEEHGLAPTAVTYNILLKQFFGRGSPSAQRQALAVLDEMRHEGVEPDVLTFNELINICVEG 236 I+ GK+R L L EG ++Y + +L++A R E V++ M EE G PT VTYN++L + G P + + +A++D M+ +GV PD T+N LI+ C G Sbjct: 175 ISMLGKERRVSVAANLFNSLHKEGFSLDVYAYTSLISAYAGSGR-HREAVVVFKKM-EEEGCKPTLVTYNVILNVYGKMGMPWS--KVMALVDGMKSDGVAPDAYTYNTLISCCRRG 287
BLAST of NO03G00280 vs. NCBI_GenBank
Match: XP_010271739.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Nelumbo nucifera]) HSP 1 Score: 66.6 bits (161), Expect = 4.700e-7 Identity = 37/117 (31.62%), Postives = 59/117 (50.43%), Query Frame = 0 Query: 119 INFWGKQRDFDKVLFLVQKLEDEGLQPNIYTFHALLNAAVSCRRGEAETKAVWQTMTEEHGLAPTAVTYNILLKQFFGRGSPSAQRQALAVLDEMRHEGVEPDVLTFNELINICVEG 236 I GK+ L+ L +G ++YT+ +++ A R G + EE G PT +TYN++L + G P + + LA++D M++EGV PD T+N LI+ C G Sbjct: 191 IGIMGKEGWVSAASSLLHSLRRDGFSIDVYTYTSMITAC--SRNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWS--KILAIVDRMKNEGVLPDSYTYNTLISCCRRG 303
BLAST of NO03G00280 vs. NCBI_GenBank
Match: CEM01049.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 66.6 bits (161), Expect = 4.700e-7 Identity = 73/311 (23.47%), Postives = 128/311 (41.16%), Query Frame = 0 Query: 168 KAVWQTMTEEHGLAPTAVTYNILLKQFFGRGSPSAQRQALAVLDEMRHEGVEPDVLTFNELINICVEGGDMKXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLKGNLLSAFETVKEMQAQALPLSTYSCNVLADACIRCGQPARALKLYKGFEMSQAGAGAGGLEGERAGGRSLDLKSFNIMLKAHREMGCLDGALGTFAALKARGLEADAITYNTLVDAYCKAQQPMGARLLIKEMKARKVGVTHQTLHPLIQE-EITSKGASLEEALRLAAEVLGEHGLKKS----DVTVCTVMEAMLAMERPADAIQAF 474 K V TM + HG+ + +L+K F S +AL + D M+ + VEPD LIN D+ +G + + +A + ++EM A + + N + AC+ GQ ++++ E D+ SFNI+ K + + GAL T A + GL+ + I+YNT++DA ++++ A L+ EM + + T LI+ + +G + E L A E L G+ +S +V +ME+ L M+ + ++ F Sbjct: 98 KEVIPTM-KAHGILCPFGFFQVLMKIF---SSKQMYDEALGLYDLMKQQNVEPDAPMLRCLINFAFACDDL-VKVEALFAALKQHELPCIQSYTTLIRAYGRRNDAWAALKVLREMLASGVQTDSLVLNSVLGACVGAGQ----------LQIAETLVNESVQMWEEGQTLLADIVSFNILSKGYAQKRDFGGALKTLRASERAGLQPNDISYNTVIDAAVRSKRLDEAWDLVLEMGGKGIEADKYTCSILIKGLQKIGQGPAREAHLNTALEYLKRLGVSESSRLHEVVSFCLMESCLHMKDLSRTLEVF 393
BLAST of NO03G00280 vs. NCBI_GenBank
Match: OIV92593.1 (hypothetical protein TanjilG_07584 [Lupinus angustifolius]) HSP 1 Score: 65.9 bits (159), Expect = 7.900e-7 Identity = 36/114 (31.58%), Postives = 64/114 (56.14%), Query Frame = 0 Query: 119 INFWGKQRDFDKVLFLVQKLEDEGLQPNIYTFHALLNAAVSCRRGEAETKAVWQTMTEEHGLAPTAVTYNILLKQFFGRGSPSAQRQALAVLDEMRHEGVEPDVLTFNELINIC 233 IN GK L+ L+++G+Q ++Y + +L+ A + R E V+ M +E G PT +T+N++L + G P + + +A++D M+ +GV PD+ T+N LI+ C Sbjct: 399 INILGKANKVSSAASLLLTLQNDGIQIDVYAYTSLITAYATNGR-YREAVNVFNKMQQE-GCTPTLITFNVILNVYGKMGMPWS--KIIALVDAMKRDGVPPDLYTYNTLISCC 508
BLAST of NO03G00280 vs. NCBI_GenBank
Match: XP_019423120.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like isoform X2 [Lupinus angustifolius]) HSP 1 Score: 65.9 bits (159), Expect = 7.900e-7 Identity = 36/114 (31.58%), Postives = 64/114 (56.14%), Query Frame = 0 Query: 119 INFWGKQRDFDKVLFLVQKLEDEGLQPNIYTFHALLNAAVSCRRGEAETKAVWQTMTEEHGLAPTAVTYNILLKQFFGRGSPSAQRQALAVLDEMRHEGVEPDVLTFNELINIC 233 IN GK L+ L+++G+Q ++Y + +L+ A + R E V+ M +E G PT +T+N++L + G P + + +A++D M+ +GV PD+ T+N LI+ C Sbjct: 158 INILGKANKVSSAASLLLTLQNDGIQIDVYAYTSLITAYATNGR-YREAVNVFNKMQQE-GCTPTLITFNVILNVYGKMGMPWS--KIIALVDAMKRDGVPPDLYTYNTLISCC 267
BLAST of NO03G00280 vs. NCBI_GenBank
Match: XP_019423122.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like isoform X3 [Lupinus angustifolius]) HSP 1 Score: 65.9 bits (159), Expect = 7.900e-7 Identity = 36/114 (31.58%), Postives = 64/114 (56.14%), Query Frame = 0 Query: 119 INFWGKQRDFDKVLFLVQKLEDEGLQPNIYTFHALLNAAVSCRRGEAETKAVWQTMTEEHGLAPTAVTYNILLKQFFGRGSPSAQRQALAVLDEMRHEGVEPDVLTFNELINIC 233 IN GK L+ L+++G+Q ++Y + +L+ A + R E V+ M +E G PT +T+N++L + G P + + +A++D M+ +GV PD+ T+N LI+ C Sbjct: 158 INILGKANKVSSAASLLLTLQNDGIQIDVYAYTSLITAYATNGR-YREAVNVFNKMQQE-GCTPTLITFNVILNVYGKMGMPWS--KIIALVDAMKRDGVPPDLYTYNTLISCC 267
BLAST of NO03G00280 vs. NCBI_GenBank
Match: XP_019423119.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like isoform X1 [Lupinus angustifolius]) HSP 1 Score: 65.9 bits (159), Expect = 7.900e-7 Identity = 36/114 (31.58%), Postives = 64/114 (56.14%), Query Frame = 0 Query: 119 INFWGKQRDFDKVLFLVQKLEDEGLQPNIYTFHALLNAAVSCRRGEAETKAVWQTMTEEHGLAPTAVTYNILLKQFFGRGSPSAQRQALAVLDEMRHEGVEPDVLTFNELINIC 233 IN GK L+ L+++G+Q ++Y + +L+ A + R E V+ M +E G PT +T+N++L + G P + + +A++D M+ +GV PD+ T+N LI+ C Sbjct: 168 INILGKANKVSSAASLLLTLQNDGIQIDVYAYTSLITAYATNGR-YREAVNVFNKMQQE-GCTPTLITFNVILNVYGKMGMPWS--KIIALVDAMKRDGVPPDLYTYNTLISCC 277 The following BLAST results are available for this feature:
BLAST of NO03G00280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 11
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G00280 ID=NO03G00280|Name=NO03G00280|organism=Nannochloropsis oceanica|type=gene|length=3084bpback to top protein sequence of NO03G00280.1 >NO03G00280.1-protein ID=NO03G00280.1-protein|Name=NO03G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=948bpback to top Synonyms
Publications
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