NO03G00030, NO03G00030 (gene) Nannochloropsis oceanica

Overview
NameNO03G00030
Unique NameNO03G00030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length963
Alignment locationchr3:9875..10837 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:9875..10837 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO03G00030 vs. NCBI_GenBank
Match: EWM29974.1 (hypothetical protein Naga_100383g2 [Nannochloropsis gaditana])

HSP 1 Score: 253.8 bits (647), Expect = 7.000e-64
Identity = 147/334 (44.01%), Postives = 199/334 (59.58%), Query Frame = 0
Query:    1 MGWWRDLFRRSSSSRRGILNFGSADIQQQPSPPSQPLQQQLPPLQLEEGGRSFLLPPPHITFSTHPMPNDISSKKNENDEDVVLERDDIN-------EDEHFPSPV-------SFSVSSSVHSVVDGINERLHHLPKWQYRLLCGSLWLILFLFVILLTVSIIYGFGLKNVHFSVTGVTPLVSTLADTQGNVPLRTTLSLDNPNIFPITASPTTTTISYIDRTNETRTLYPLVRAPVPRIYLHSHEEGHIIYSDLIFKNLGKLPGGPELMTAVLKGNATFLDFTTTLRLRVKALGFVPIVRVFQVDCYISILWGEPTRRDGSKETISDCMGTFL 321
            M WW  L    SS RR   +  S   Q+Q SP S  +   +P   L+E G      PP +   +    ++  S   E D++    R++I+       E E   +         SFS + SVHSV+  I  RLHHLP+W+YR LC SL L + L  +LL VSI+YGFGLK VH SVTG TPL   L D +GN P+R T+SLDNPN FPITAS +   +SY++RT+  +   PL  AP+PRI LH+  +  ++ +D +  +L   P G  +M AVL+G ATFL+   TLRL V+ALGF+ IVR F++DC ++ LWGEPT+ DGSK+T+SDC G F+
Sbjct:    1 MRWWHRLLTYLSSRRRDTTSHCSYMTQEQ-SPLSPSI--SIPAFVLQERGILSPAKPPPLESQSMNF-DERKSNYEECDKETSETREEISDGTLSSVEGEQAQNSTGVPLRAPSFSTTQSVHSVMSDIRSRLHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGTTPLAPNLVDAEGNAPMRATISLDNPNSFPITASASEVVLSYMNRTDGGQQYTPLASAPLPRIQLHARHKDCMLTTDFVLAHLPTKPEGKAIMGAVLQGRATFLNAAATLRLHVRALGFIRIVRRFEIDCSVATLWGEPTKADGSKDTVSDCFGAFV 330          
BLAST of NO03G00030 vs. NCBI_GenBank
Match: EWM26903.1 (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 126.3 bits (316), Expect = 1.700e-25
Identity = 81/255 (31.76%), Postives = 132/255 (51.76%), Query Frame = 0
Query:   67 MPNDISSKKNENDEDVVLERDDINEDEHFPSPVSF--SVSSSVHSVVDGINERLHHLPKWQYRLLCGSLWLILFLFVILLTVSIIYGFGLKNVHFSVTGVTPLVSTLADTQGNVPLRTTLSLDNPNIFPITASPTTTTISYIDRTNETRTLYPLVRAPVPRIYLHSHEEGHIIYSDLIFKNLGKLPGGPELMTAVLKGNATFLDFTTTLRLRVKALGFVPIVRVFQVDCYISILWGEPTRRDGSKETISDCMGTF 320
            +  ++  ++ E     V E++   E +     +S   S+ SSV S+V  I   L+ +PKW+YRL+  S+ ++L  F++LL VS++YGFG+   H  V  V  ++    D  G++P+R+ + ++NPN F I   PT  ++ Y   T    +L  L  + +P   LH+ E  H   S  + ++LG + GGP+L  AVL G  TF        L V +LGF+ I R + ++C +   WG+          +SDC G F
Sbjct:  135 LSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPD--GSLPVRSLMRVNNPNRFSILVHPTDISV-YSHPTRSPGSL--LGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEGGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWGKDI-------LLSDCYGRF 377          
BLAST of NO03G00030 vs. NCBI_GenBank
Match: XP_005853540.1 (hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526] >EKU22819.1 hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 124.4 bits (311), Expect = 6.400e-25
Identity = 87/275 (31.64%), Postives = 143/275 (52.00%), Query Frame = 0
Query:   51 RSFLLPPPHITFSTHPMPNDISSKKNENDEDVVLERDDINEDEHFPSPVSFSVSSSVHS----VVDGINERLHHLPKWQYRLLCGSLWLILFLFVILLTVSIIYGFGLKNVHFSVTGV-TPLVSTLADTQGNVPLRTTLSLDNPNIFPITASPTTTTISYIDRTNETRTLYPLVRAPVPR-IYLHSHEEGHIIYSDLIFKNLGKLPGGPELMTAVLKGNATFLDFTTTLRLRVKALGFVPIVRVFQVDCYISILWGEPTRRDGSKETISDCMGTF 320
            RSF+     ++ S   + +  S+++  ++    +   D  + +   +P    + SS+HS    VV  + + LHH+PKWQYRLL  ++ ++    V++LTVS++YGF +   H  VT V   L     D+ G++P+ +T+   NPN F  T+S +   I  +     +R+   L+    PR I L  HEEG+    +   K++G + GG   + AVL+G    L  T+T ++ VK LG +P  R F+V+C +   WGE      +  T+SDC G F
Sbjct:   41 RSFIRKKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYAL----PSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEGQNCLLYTTSTSKITVKGLGLIPTSRNFKVECTVLRKWGE------NPLTLSDCYGRF 305          
BLAST of NO03G00030 vs. NCBI_GenBank
Match: XP_005853541.1 (hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526] >EKU22820.1 hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.1 bits (261), Expect = 4.000e-19
Identity = 86/317 (27.13%), Postives = 136/317 (42.90%), Query Frame = 0
Query:   67 MPNDISSKKNENDEDVVLERDDINEDEHFPSPVSF--SVSSSVHSVVDGINERLHHLPKWQYRLLCGSLWLILFLFVILLTVSIIYGFGLKNVHFSVTGVTPLVSTLADTQGNVPLRTTLSLDNPNIFPITASPT----TTTISYIDRTNETRTLYPLVRAP------------------------------VPRIYLHSHEEGHIIYSDLIFKNLGKL----------------------------PGGPELMTAVLKGNATFLDFTTTLRLRVKALGFVPIVRVFQVDCYISILWGEPTRRDGSKETISDCMGTF 320
            +  ++  ++ E     V E++   E +     +S   S+ SSV S+V  I   L+ +PKW+YRL+  S+ ++L  F++LL VS++YGFG+   H  V  V  ++    D  G++P+R+ + ++NPN F I  SP     + T+S + R    R L P VR P                              +P   LH+ E  H   S  + ++LG +                             GGP+L  AVL G  TF        L V +LGF+ I R + ++C +   WG+          +SDC G F
Sbjct:  104 LSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPD--GSLPVRSLMRVNNPNRFSILHSPARNLGSGTLSQLTRFR--RMLAPRVRLPFLVSGQVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEKSFGLSFRIDGEGRRVDVRFSYLSHPSQGGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWGKDI-------LLSDCYGRF 409          
BLAST of NO03G00030 vs. NCBI_GenBank
Match: EWM26900.1 (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 85.5 bits (210), Expect = 3.300e-13
Identity = 65/217 (29.95%), Postives = 112/217 (51.61%), Query Frame = 0
Query:   51 RSFLLPPPHITFSTHPMPNDISSKKNENDEDVVLERDDINEDEHFPSPVSFSVSSSVHS----VVDGINERLHHLPKWQYRLLCGSLWLILFLFVILLTVSIIYGFGLKNVHFSVTGV-TPLVSTLADTQGNVPLRTTLSLDNPNIFPITASPTTTTISYIDRTNETRTLYPLVRAPVPR-IYLHSHEEGHIIYSDLIFKNLGKLPGGPELMTAVLK 262
            RSF+     ++ S   + +  S+++  ++    +   D  + +   +P    + SS+HS    VV  + + LHH+PKWQYRLL  ++ ++    V++LTVS++YGF +   H  VT V   L     D+ G++P+ +T+   NPN F  T+S +   I  +     +R+   L+    PR I L  HEEG+    +   K++G + GG   + AVL+
Sbjct:   41 RSFIRKKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYAL----PSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLE 253          
BLAST of NO03G00030 vs. NCBI_GenBank
Match: EWM26904.1 (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 84.0 bits (206), Expect = 9.500e-13
Identity = 56/185 (30.27%), Postives = 98/185 (52.97%), Query Frame = 0
Query:   67 MPNDISSKKNENDEDVVLERDDINEDEHFPSPVSF--SVSSSVHSVVDGINERLHHLPKWQYRLLCGSLWLILFLFVILLTVSIIYGFGLKNVHFSVTGVTPLVSTLADTQGNVPLRTTLSLDNPNIFPITASPTTTTISYIDRTNETRTLYPLVRAPVPRIYLHSHEEGHIIYSDLIFKNLGKL 250
            +  ++  ++ E     V E++   E +     +S   S+ SSV S+V  I   L+ +PKW+YRL+  S+ ++L  F++LL VS++YGFG+   H  V  V  ++    D  G++P+R+ + ++NPN F I   PT  ++ Y   T    +L  L  + +P   LH+ E  H   S  + ++LG +
Sbjct:   11 LSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLPPD--GSLPVRSLMRVNNPNRFSILVHPTDISV-YSHPTRSPGSL--LGVSTIPEHLLHAREGAHTTESVFVVRDLGSI 190          
BLAST of NO03G00030 vs. NCBI_GenBank
Match: EWM26901.1 (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 72.4 bits (176), Expect = 2.900e-9
Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = 0
Query:  120 HLPKWQYRLLCGSLWLILFLFVILLTVSIIYGFGLKNVHFSVTGV-TPLVSTLADTQGNVPLRTTLSLDNPNIFPITASPTTTTISYIDRTNETRTLYPLVRAPVPR-IYLHSHEEGHIIYSDLIFKNLGKLPGGPELMTAVLK 262
            H PKWQYRLL  ++ ++    V++LTVS++YGF +   H  VT V   L     D+ G++P+ +T+   NPN F  T+S +   I  +     +R+   L+    PR I L  HEEG+    +   K++G + GG   + AVL+
Sbjct:   22 HRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYAL----PSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLE 161          
The following BLAST results are available for this feature:
BLAST of NO03G00030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM29974.17.000e-6444.01hypothetical protein Naga_100383g2 [Nannochloropsi... [more]
EWM26903.11.700e-2531.76hypothetical protein Naga_100103g11 [Nannochlorops... [more]
XP_005853540.16.400e-2531.64hypothetical protein NGA_0432801 [Nannochloropsis ... [more]
XP_005853541.14.000e-1927.13hypothetical protein NGA_0432901 [Nannochloropsis ... [more]
EWM26900.13.300e-1329.95hypothetical protein Naga_100103g12 [Nannochlorops... [more]
EWM26904.19.500e-1330.27hypothetical protein Naga_100103g11 [Nannochlorops... [more]
EWM26901.12.900e-934.72hypothetical protein Naga_100103g12 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL071nonsL071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR012ncniR012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR055ngnoR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005916NSK005916Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00030.1NO03G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612366gene_10433Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100383g2gene669Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00030.1NO03G00030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00030 ID=NO03G00030|Name=NO03G00030|organism=Nannochloropsis oceanica|type=gene|length=963bp
ATGGGATGGTGGCGGGATCTGTTCCGCCGATCCAGCAGCAGCCGGCGTGG
AATCCTTAACTTTGGCAGCGCTGATATACAACAGCAACCCTCTCCACCGT
CGCAGCCACTACAACAACAGCTTCCACCTCTGCAGCTCGAGGAGGGTGGG
CGCAGTTTCTTGCTGCCGCCCCCACACATCACGTTCAGCACCCATCCGAT
GCCTAATGACATCAGTAGTAAGAAAAATGAAAATGATGAGGATGTGGTAC
TCGAGAGGGATGATATCAATGAGGATGAACACTTCCCGTCGCCTGTCTCG
TTCTCCGTGTCCTCGAGCGTCCATTCGGTCGTCGACGGCATCAACGAGCG
CCTGCACCACTTACCCAAATGGCAGTATCGGCTCTTGTGCGGAAGCTTGT
GGCTTATCCTCTTCCTCTTTGTTATCCTGCTTACAGTTTCCATCATCTAT
GGCTTTGGCCTCAAGAACGTCCACTTTTCCGTGACGGGCGTGACTCCCCT
GGTCTCCACCTTGGCTGACACGCAGGGCAACGTCCCTCTCCGCACCACCC
TCAGCCTCGACAATCCCAATATCTTCCCCATTACTGCATCACCCACTACC
ACAACCATCTCATACATTGACAGAACCAATGAAACGCGGACACTCTATCC
TCTCGTCAGAGCTCCGGTGCCACGCATCTACCTCCACTCCCACGAGGAAG
GCCATATTATCTACTCCGACTTGATTTTTAAAAATCTTGGAAAGCTTCCT
GGGGGTCCTGAATTAATGACAGCAGTGCTCAAGGGCAACGCCACATTTCT
AGATTTCACCACTACGCTGCGGCTACGTGTTAAAGCTTTGGGTTTTGTGC
CTATCGTTCGCGTTTTTCAAGTAGACTGCTATATATCCATTCTTTGGGGA
GAACCAACCAGGCGGGACGGCAGCAAAGAAACAATCTCAGATTGCATGGG
CACTTTTTTGTAA
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protein sequence of NO03G00030.1

>NO03G00030.1-protein ID=NO03G00030.1-protein|Name=NO03G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MGWWRDLFRRSSSSRRGILNFGSADIQQQPSPPSQPLQQQLPPLQLEEGG
RSFLLPPPHITFSTHPMPNDISSKKNENDEDVVLERDDINEDEHFPSPVS
FSVSSSVHSVVDGINERLHHLPKWQYRLLCGSLWLILFLFVILLTVSIIY
GFGLKNVHFSVTGVTPLVSTLADTQGNVPLRTTLSLDNPNIFPITASPTT
TTISYIDRTNETRTLYPLVRAPVPRIYLHSHEEGHIIYSDLIFKNLGKLP
GGPELMTAVLKGNATFLDFTTTLRLRVKALGFVPIVRVFQVDCYISILWG
EPTRRDGSKETISDCMGTFL*
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Synonyms
Publications