NO03G00030.1, NO03G00030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00030.1
Unique NameNO03G00030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length963
Alignment locationchr3:9875..10837 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:9875..10837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00030.1 vs.
Match: EWM29974.1 (hypothetical protein Naga_100383g2 [Nannochloropsis gaditana])

HSP 1 Score: 254.2 bits (648), Expect = 5.300e-64
Identity = 147/334 (44.01%), Postives = 199/334 (59.58%), Query Frame = 0 
Query:    1 MGWWRDLFRRSSSSRRGILNFGSADIQQQPSPPSQPLQQQLPPLQLEEGGRSFLLPPPHITFSTHPMPNDISSKKNENDEDVVLERDDIN-------EDEHFPSPV-------SFSVSSSVHSVVDGINERLHHLPKWQYRLLCGSLWLILFLFVILLTVSIIYGFGLKNVHFSVTGVTPLVSTLADTQGNVPLRTTLSLDNPNIFPITASPTTTTISYIDRTNETRTLYPLVRAPVPRIYLHSHEEGHIIYSDLIFKNLGKLPGGPELMTAVLKGNATFLDFTTTLRLRVKALGFVPIVRVFQVDCYISILWGEPTRRDGSKETISDCMGTFL 321
            M WW  L    SS RR   +  S   Q+Q SP S  +   +P   L+E G      PP +   +    ++  S   E D++    R++I+       E E   +         SFS + SVHSV+  I  RLHHLP+W+YR LC SL L + L  +LL VSI+YGFGLK VH SVTG TPL   L D +GN P+R T+SLDNPN FPITAS +   +SY++RT+  +   PL  AP+PRI LH+  +  ++ +D +  +L   P G  +M AVL+G ATFL+   TLRL V+ALGF+ IVR F++DC ++ LWGEPT+ DGSK+T+SDC G F+
Sbjct:    1 MRWWHRLLTYLSSRRRDTTSHCSYMTQEQ-SPLSPSIS--IPAFVLQERGILSPAKPPPLESQSMNF-DERKSNYEECDKETSETREEISDGTLSSVEGEQAQNSTGVPLRAPSFSTTQSVHSVMSDIRSRLHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGTTPLAPNLVDAEGNAPMRATISLDNPNSFPITASASEVVLSYMNRTDGGQQYTPLASAPLPRIQLHARHKDCMLTTDFVLAHLPTKPEGKAIMGAVLQGRATFLNAAATLRLHVRALGFIRIVRRFEIDCSVATLWGEPTKADGSKDTVSDCFGAFV 330
The following BLAST results are available for this feature:
BLAST of NO03G00030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29974.15.300e-6444.01hypothetical protein Naga_100383g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00030NO03G00030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00030.1NO03G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00030.1.cds1NO03G00030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00030.1 ID=NO03G00030.1|Name=NO03G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
ATGGGATGGTGGCGGGATCTGTTCCGCCGATCCAGCAGCAGCCGGCGTGG
AATCCTTAACTTTGGCAGCGCTGATATACAACAGCAACCCTCTCCACCGT
CGCAGCCACTACAACAACAGCTTCCACCTCTGCAGCTCGAGGAGGGTGGG
CGCAGTTTCTTGCTGCCGCCCCCACACATCACGTTCAGCACCCATCCGAT
GCCTAATGACATCAGTAGTAAGAAAAATGAAAATGATGAGGATGTGGTAC
TCGAGAGGGATGATATCAATGAGGATGAACACTTCCCGTCGCCTGTCTCG
TTCTCCGTGTCCTCGAGCGTCCATTCGGTCGTCGACGGCATCAACGAGCG
CCTGCACCACTTACCCAAATGGCAGTATCGGCTCTTGTGCGGAAGCTTGT
GGCTTATCCTCTTCCTCTTTGTTATCCTGCTTACAGTTTCCATCATCTAT
GGCTTTGGCCTCAAGAACGTCCACTTTTCCGTGACGGGCGTGACTCCCCT
GGTCTCCACCTTGGCTGACACGCAGGGCAACGTCCCTCTCCGCACCACCC
TCAGCCTCGACAATCCCAATATCTTCCCCATTACTGCATCACCCACTACC
ACAACCATCTCATACATTGACAGAACCAATGAAACGCGGACACTCTATCC
TCTCGTCAGAGCTCCGGTGCCACGCATCTACCTCCACTCCCACGAGGAAG
GCCATATTATCTACTCCGACTTGATTTTTAAAAATCTTGGAAAGCTTCCT
GGGGGTCCTGAATTAATGACAGCAGTGCTCAAGGGCAACGCCACATTTCT
AGATTTCACCACTACGCTGCGGCTACGTGTTAAAGCTTTGGGTTTTGTGC
CTATCGTTCGCGTTTTTCAAGTAGACTGCTATATATCCATTCTTTGGGGA
GAACCAACCAGGCGGGACGGCAGCAAAGAAACAATCTCAGATTGCATGGG
CACTTTTTTGTAA
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protein sequence of NO03G00030.1

>NO03G00030.1-protein ID=NO03G00030.1-protein|Name=NO03G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MGWWRDLFRRSSSSRRGILNFGSADIQQQPSPPSQPLQQQLPPLQLEEGG
RSFLLPPPHITFSTHPMPNDISSKKNENDEDVVLERDDINEDEHFPSPVS
FSVSSSVHSVVDGINERLHHLPKWQYRLLCGSLWLILFLFVILLTVSIIY
GFGLKNVHFSVTGVTPLVSTLADTQGNVPLRTTLSLDNPNIFPITASPTT
TTISYIDRTNETRTLYPLVRAPVPRIYLHSHEEGHIIYSDLIFKNLGKLP
GGPELMTAVLKGNATFLDFTTTLRLRVKALGFVPIVRVFQVDCYISILWG
EPTRRDGSKETISDCMGTFL*
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mRNA from alignment at chr3:9875..10837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00030.1 ID=NO03G00030.1|Name=NO03G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=963bp|location=Sequence derived from alignment at chr3:9875..10837- (Nannochloropsis oceanica)
ATGGGATGGTGGCGGGATCTGTTCCGCCGATCCAGCAGCAGCCGGCGTGG
AATCCTTAACTTTGGCAGCGCTGATATACAACAGCAACCCTCTCCACCGT
CGCAGCCACTACAACAACAGCTTCCACCTCTGCAGCTCGAGGAGGGTGGG
CGCAGTTTCTTGCTGCCGCCCCCACACATCACGTTCAGCACCCATCCGAT
GCCTAATGACATCAGTAGTAAGAAAAATGAAAATGATGAGGATGTGGTAC
TCGAGAGGGATGATATCAATGAGGATGAACACTTCCCGTCGCCTGTCTCG
TTCTCCGTGTCCTCGAGCGTCCATTCGGTCGTCGACGGCATCAACGAGCG
CCTGCACCACTTACCCAAATGGCAGTATCGGCTCTTGTGCGGAAGCTTGT
GGCTTATCCTCTTCCTCTTTGTTATCCTGCTTACAGTTTCCATCATCTAT
GGCTTTGGCCTCAAGAACGTCCACTTTTCCGTGACGGGCGTGACTCCCCT
GGTCTCCACCTTGGCTGACACGCAGGGCAACGTCCCTCTCCGCACCACCC
TCAGCCTCGACAATCCCAATATCTTCCCCATTACTGCATCACCCACTACC
ACAACCATCTCATACATTGACAGAACCAATGAAACGCGGACACTCTATCC
TCTCGTCAGAGCTCCGGTGCCACGCATCTACCTCCACTCCCACGAGGAAG
GCCATATTATCTACTCCGACTTGATTTTTAAAAATCTTGGAAAGCTTCCT
GGGGGTCCTGAATTAATGACAGCAGTGCTCAAGGGCAACGCCACATTTCT
AGATTTCACCACTACGCTGCGGCTACGTGTTAAAGCTTTGGGTTTTGTGC
CTATCGTTCGCGTTTTTCAAGTAGACTGCTATATATCCATTCTTTGGGGA
GAACCAACCAGGCGGGACGGCAGCAAAGAAACAATCTCAGATTGCATGGG
CACTTTTTTGTAA
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Coding sequence (CDS) from alignment at chr3:9875..10837-

>NO03G00030.1 ID=NO03G00030.1|Name=NO03G00030.1|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at chr3:9875..10837- (Nannochloropsis oceanica)
ATGGGATGGTGGCGGGATCTGTTCCGCCGATCCAGCAGCAGCCGGCGTGG
AATCCTTAACTTTGGCAGCGCTGATATACAACAGCAACCCTCTCCACCGT
CGCAGCCACTACAACAACAGCTTCCACCTCTGCAGCTCGAGGAGGGTGGG
CGCAGTTTCTTGCTGCCGCCCCCACACATCACGTTCAGCACCCATCCGAT
GCCTAATGACATCAGTAGTAAGAAAAATGAAAATGATGAGGATGTGGTAC
TCGAGAGGGATGATATCAATGAGGATGAACACTTCCCGTCGCCTGTCTCG
TTCTCCGTGTCCTCGAGCGTCCATTCGGTCGTCGACGGCATCAACGAGCG
CCTGCACCACTTACCCAAATGGCAGTATCGGCTCTTGTGCGGAAGCTTGT
GGCTTATCCTCTTCCTCTTTGTTATCCTGCTTACAGTTTCCATCATCTAT
GGCTTTGGCCTCAAGAACGTCCACTTTTCCGTGACGGGCGTGACTCCCCT
GGTCTCCACCTTGGCTGACACGCAGGGCAACGTCCCTCTCCGCACCACCC
TCAGCCTCGACAATCCCAATATCTTCCCCATTACTGCATCACCCACTACC
ACAACCATCTCATACATTGACAGAACCAATGAAACGCGGACACTCTATCC
TCTCGTCAGAGCTCCGGTGCCACGCATCTACCTCCACTCCCACGAGGAAG
GCCATATTATCTACTCCGACTTGATTTTTAAAAATCTTGGAAAGCTTCCT
GGGGGTCCTGAATTAATGACAGCAGTGCTCAAGGGCAACGCCACATTTCT
AGATTTCACCACTACGCTGCGGCTACGTGTTAAAGCTTTGGGTTTTGTGC
CTATCGTTCGCGTTTTTCAAGTAGACTGCTATATATCCATTCTTTGGGGA
GAACCAACCAGGCGGGACGGCAGCAAAGAAACAATCTCAGATTGCATGGG
CACTTTTTTGTAA
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Synonyms
Publications