NO02G06170, NO02G06170 (gene) Nannochloropsis oceanica

Overview
NameNO02G06170
Unique NameNO02G06170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1678
Alignment locationchr2:1652640..1654317 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1652640..1654317 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G06170 vs. NCBI_GenBank
Match: XP_005854224.1 (hypothetical protein NGA_0211900, partial [Nannochloropsis gaditana CCMP526] >EKU22138.1 hypothetical protein NGA_0211900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 65.9 bits (159), Expect = 3.800e-7
Identity = 45/90 (50.00%), Postives = 54/90 (60.00%), Query Frame = 0 
Query:  152 IGRVEGHNQRVLADAVERSQ-----DGTVERLVALNGAKEILRLARSYDIGILFSDTSLGAAAAQALAEEGRVGEKEGRRAKGSNGTPFP 237
            +G V GHNQRV+ ++V R Q     DG+VE  +  N A EILRLAR Y +GI F D SL  AAA+AL  E   G KEGR  +   GT  P
Sbjct:    1 MGTVHGHNQRVM-ESVGRVQDFKTGDGSVEEHIVFNAAVEILRLARCYQVGITFQDPSLAEAAARALDRE---GGKEGRE-EPREGTTVP 85
The following BLAST results are available for this feature:
BLAST of NO02G06170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854224.13.800e-750.00hypothetical protein NGA_0211900, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007287NSK007287Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G06170.1NO02G06170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G06170.1NO02G06170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G06170 ID=NO02G06170|Name=NO02G06170|organism=Nannochloropsis oceanica|type=gene|length=1678bp
ATGCGTAGGGGAAGCTTCAACCAATATCAGGAAATTTTCTGCCACCACAT
GCTGCGACAGAGTTTAATGGACGCACAACCAGAGCCGCTGCTACCGAGAA
TCCATCTCGTTGGCGGGGTCAAGTCTCTTGCTCCGAATACCACCACGGCC
GCCAAAACACATGTCACGGATTTTCGAAGCGTGAAGCAGGCGACAGGACT
TGGATTAGACAAGAATAAAGGCGGGTTGATAGTCTTTGGGCATGGTCACG
ATGCGCCGCTACCTCCTCCCCTCCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAACCGGACAAGGCACTCTCCAAGAAGCGCCCTCGTCAACAGCA
GCAACACCAACAACAACAAGAAAGAGAACAAGAACAAGCTTTCGATACTG
GAAACGACGTGGACAGgtacgctaaatgagtcttacatgtatatacagac
gcatgcggctcgatactgccctactcttcctgccacggctcaaacacccc
accagGCGATTAAAACCCAATGCGGACGCTCTGAAACGAATCATAGGGAG
AGTAGAAGGGCACAACCAGAGGGTTCTGGCCGATGCTGTCGAACGAAGCC
AGGACGGGACTGTGGAGCGATTAGgtgagggagggagggagggaggaagg
gaagaagtgggaggagaaagaacgaaagatgggagactaggctatccttt
tattataaggagttcatgttggaaagaggcatgtcaccctggccttgaat
tctccaacggcttccgcgtcttttttccacaaacattcatcctccctcat
tccctcccttcctccccccttcctccctcccttcccttcaccaattagTG
GCCTTGAACGGCGCAAAGGAGATTCTCCGCCTGGCGCGCTCTTACGACAT
CGGCATCTTGTTCTCGGACACCTCTTTGGGGGCAGCGGCTGCGCAGGCCT
TGGCTGAGGAAGGAAGGGTGGGCGAGAAGGAGGGGAGGAGGGCGAAGGGA
AGTAATGGTACACCGTTTCCTGTCCTTGGCAGGATGCTGGGTCCCGAGGT
CACAAACGACGAGAAGGAGGGAGAGAGGATGGGAGGGAGGGCGGTGCAAC
TGCCGGTAGGGGTAATCGAGAGGGAGCCGAAGAGGAAGGAGGAGAAAATG
ACTGGTGGTAGTAGTACGGGAGGAGAAGGAGGCAGCAAATTATTCGGCCG
GGCTTTTGCGGCAGCCCTTGGAGGAAGGGAAGAGAGAGGAGGAGGAGAAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GCATCAGAGGGGAGTAGAGAAAAGCATGTTAGACATGTAAAAATAGAAGC
AGCAGCAGTAGCACTACCGTTTGCAGGAGTAGAAACAGCAGCATCACAAT
CATCAGGAACAACAAGTGTAATACCAACTGCAGCAGCAGCAGCAGCAGAA
GTCGAAGCAACAGGGGTAGAAGGAAGGCACAAAAGACAACGGGTCGTCAT
TGCACGTGGAAGCGATGGAGGGAGGGGAGGTGAAGGGGCAGGGGCAGGGG
CAGCGAGGGGCTTCAAGGCCGCACTAACTGGCATTTTCTCAAAGGGGGGG
ATAGGTGGTGGGAGAGGGAGATTGAGAGGGCCACGTGAAGCGGCAGCATC
AGGAGGACCTGGAGGAGGGAAGGGTTGA
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protein sequence of NO02G06170.1

>NO02G06170.1-protein ID=NO02G06170.1-protein|Name=NO02G06170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MRRGSFNQYQEIFCHHMLRQSLMDAQPEPLLPRIHLVGGVKSLAPNTTTA
AKTHVTDFRSVKQATGLGLDKNKGGLIVFGHGHDAPLPPPLQQQQQQQQQ
QQQPDKALSKKRPRQQQQHQQQQEREQEQAFDTGNDVDRRLKPNADALKR
IIGRVEGHNQRVLADAVERSQDGTVERLVALNGAKEILRLARSYDIGILF
SDTSLGAAAAQALAEEGRVGEKEGRRAKGSNGTPFPVLGRMLGPEVTNDE
KEGERMGGRAVQLPVGVIEREPKRKEEKMTGGSSTGGEGGSKLFGRAFAA
ALGGREERGGGEGGGGGGGGGGGGGGGGGASEGSREKHVRHVKIEAAAVA
LPFAGVETAASQSSGTTSVIPTAAAAAAEVEATGVEGRHKRQRVVIARGS
DGGRGGEGAGAGAARGFKAALTGIFSKGGIGGGRGRLRGPREAAASGGPG
GGKG*
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Synonyms
Publications