NO02G06160, NO02G06160 (gene) Nannochloropsis oceanica

Overview
NameNO02G06160
Unique NameNO02G06160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2277
Alignment locationchr2:1649515..1651791 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1649515..1651791 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
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BLAST of NO02G06160 vs. NCBI_GenBank
Match: CBN77310.1 (hypothetical protein Esi_0044_0107 [Ectocarpus siliculosus])

HSP 1 Score: 69.7 bits (169), Expect = 3.300e-8
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 0 
Query:  471 KLLVGICIFGPLANGTFLAGVPVLSAGALSGFNLAVWKKQLAYATTRDVQMWSFFYPLNFLFVPRKFRPLATNLMGLFFLVVLS 555
            K +     + P ANG FLAG  VL  G  + F  A W++QL   T RD +MW   + LNF  VP+ +RPLA +L G+  L V+S
Sbjct:    9 KAVASSVFYSPFANGLFLAGARVLRYGFKTRFGWAEWRRQLTVCTIRDFEMWPPLHVLNFWLVPKHWRPLAGHLAGVVLLAVIS 92
The following BLAST results are available for this feature:
BLAST of NO02G06160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
CBN77310.13.300e-842.86hypothetical protein Esi_0044_0107 [Ectocarpus sil... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G06160.1NO02G06160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|155896gene_1210Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G06160.1NO02G06160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G06160 ID=NO02G06160|Name=NO02G06160|organism=Nannochloropsis oceanica|type=gene|length=2277bp
ATGCGTACTCCAACGATTACGCGGCCGAAGAGGGGGGCTTCAGCCGCAGT
CTTCTTGCCCAGCCTCCTCTCCCTCATCCTTGTCAGCAGCAGCGCAGCCA
ACGCAGCCGTCGCTCATGCCGATCAAGCAAGCACTTGTGGCAGCAATTTC
CAGCACTGTTCCCAATCTGCATCAATATCCACCATGTCCGCTCCCTGCGA
ATCAACGTCCCTTCCTGCTGTGCGTGAGAGCACCTCCCTTAGCCCGACCA
AGGTAAAGAGCTGCAGCACCAGCGTCGAGCCGACGCATGCGCCCTCCTCC
TCCTGCCTCCTCAGCACGGTCTCAGGCGGGTTCATGCCTTCGCCCACTCT
TCCTCCCTTTAGCCGGTCTTTAAATTCCCCTTCCACCGCTGCCGCGGCTG
CGGTGGCGGCAGCCTCCTCCCCTCCTTCTGCGGGCGCACCTGGAGCCCTC
TCCTCTCTCCATGCTTCTGCCTCCCCTTCCATCTCGTCCGCCTCCTCTCG
ATCGGTCTCTCCCACCTCCCCCCTTACCTTACTATCACCCTTCACCGTTC
CCTCTAACTACATCCGGAGCTTCAGCAGCGTGTTAGTCCGTCCCCGACCC
ACAAGAGAGACCTTCGAAGCGGAGGCGGAAGAGGAGAACGAGGGATGGCG
CTTTCTGTACGCTCCTCCCGAGAGCTACGAACACTACCAAGACTTCCAAG
ACCCTTACTACCTGACTCCTTCCACCCTCTCCTCCCTTGCTACCTTTTCC
TCACACGCCGTCACCGCTGCCCCCACTACCGACTCCTCCTCCTCCACTCT
CCGCTCCTCCCCCTTCTTCTCCCCCTCCTCCTCCTTCTTTTCCTCCTCCT
TGTCCTCCTCTTCCTCCCGCCGCTATGAACGTGAGCGTCGAGCTCGAGCT
AACCGCCGGTTAAGAATAACCTCATCCTCCCCCTCCACCTCCTCCTTCTC
CTTCTCCCCCATCTACCGAGATCTCTTCCTTCCATCCTCTCCCGCCTCCC
CCCTGCCCTCCCTCCAGCCATTCCTTACCCACGCTAAGTCCCTCCTCCTC
GCCCTCCTCCGTGCCCCCTCCCACCTCCTCTCCAAGCTGTTCGCGGGCTA
CAGTAACTTATTGGAAACGCATTTCTTCCTCACCTCCCTGGTGCAAGCCA
CCGTCCTGGGGATATGCGGAGACATTGCGGCCCAGAACGTAGAGGTTCTT
GTCCGGGGCGGGCTCCTGAGGGCAGGAGGGCTGGAGGGAGGAATAGTGGC
GGGGGTGCAGAGGTTGCTGCAGGGATTTAAGCCGGACTGGGTCAGGACGA
GGAACGTGGCTGTGTTGACGACCGCGATAGgtgggcggaggagggaagga
gagagtgagggagggggggagggagggagggcacctgtgggtcttgggcc
tcgttggtgttgcccatgctttgtctaagcagtatatgtcactgatattt
ctcgtaattcctccccgttttacccgccagACGGCCTGCTTACCCCCCAA
TACTACGTGTGGATGGAGCGGTGGTTCTCCGAGAAGAAGAGCGTCAAGGT
CATCATGCAGAAGCTGCTGGTGGGCATCTGTATTTTCGGGCCTCTTGCCA
ACGGgtaggtttttccctccctcccttcctccttccctccctccctccct
ttccccatttgtctccgttcttccacctgtcagtcgcgtatgtttgacgt
cgattcttcttgttgcgcgccctgcttccctccttccctccttctctcct
tccctctttccctctttccctccttccctccttcccttctctcctccctc
cgcccccggtcgacttcctaactccacctcagagattttcctcgcttacc
ccctctccctcgggccctccctcgctccatcccttcccagCACCTTCCTC
GCCGGCGTCCCTGTCCTGTCAGCGGGCGCGCTCTCTGGCTTCAACCTGGC
CGTGTGGAAGAAGCAGCTCGCATACGCCACCACCCGCGACGTCCAGgtga
ggagagagggagggagggagggagggagtgtcaatctcaaccgtgcgcgg
accgttctacaagggccgtcacgacggaaagtacacccacaccggcgtcc
cttcactcacctctgcctcccatcctctctccccccttcccttctccccc
tcagATGTGGAGCTTTTTTTACCCACTTAACTTCCTCTTCGTTCCCCGGA
AGTTCCGACCTCTGGCCACCAACCTCATGGGCCTGTTCTTTCTCGTGGTC
CTCTCCCTCTGTGCCTACAGCGGCTAG
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protein sequence of NO02G06160.1

>NO02G06160.1-protein ID=NO02G06160.1-protein|Name=NO02G06160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=561bp
MRTPTITRPKRGASAAVFLPSLLSLILVSSSAANAAVAHADQASTCGSNF
QHCSQSASISTMSAPCESTSLPAVRESTSLSPTKVKSCSTSVEPTHAPSS
SCLLSTVSGGFMPSPTLPPFSRSLNSPSTAAAAAVAAASSPPSAGAPGAL
SSLHASASPSISSASSRSVSPTSPLTLLSPFTVPSNYIRSFSSVLVRPRP
TRETFEAEAEEENEGWRFLYAPPESYEHYQDFQDPYYLTPSTLSSLATFS
SHAVTAAPTTDSSSSTLRSSPFFSPSSSFFSSSLSSSSSRRYERERRARA
NRRLRITSSSPSTSSFSFSPIYRDLFLPSSPASPLPSLQPFLTHAKSLLL
ALLRAPSHLLSKLFAGYSNLLETHFFLTSLVQATVLGICGDIAAQNVEVL
VRGGLLRAGGLEGGIVAGVQRLLQGFKPDWVRTRNVAVLTTAIDGLLTPQ
YYVWMERWFSEKKSVKVIMQKLLVGICIFGPLANGTFLAGVPVLSAGALS
GFNLAVWKKQLAYATTRDVQMWSFFYPLNFLFVPRKFRPLATNLMGLFFL
VVLSLCAYSG*
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Synonyms
Publications