NO02G06160.1, NO02G06160.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G06160.1
Unique Name	NO02G06160.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1683
Alignment location	chr2:1649515..1651791 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1649515..1651791 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G06160.1 vs.
Match: CBN77310.1 (hypothetical protein Esi_0044_0107 [Ectocarpus siliculosus])

HSP 1 Score: 69.7 bits (169), Expect = 3.300e-8
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 0

Query:  471 KLLVGICIFGPLANGTFLAGVPVLSAGALSGFNLAVWKKQLAYATTRDVQMWSFFYPLNFLFVPRKFRPLATNLMGLFFLVVLS 555
            K +     + P ANG FLAG  VL  G  + F  A W++QL   T RD +MW   + LNF  VP+ +RPLA +L G+  L V+S
Sbjct:    9 KAVASSVFYSPFANGLFLAGARVLRYGFKTRFGWAEWRRQLTVCTIRDFEMWPPLHVLNFWLVPKHWRPLAGHLAGVVLLAVIS 92

The following BLAST results are available for this feature:

BLAST of NO02G06160.1 vs.

BLAST of NO02G06160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBN77310.1	3.300e-8	42.86	hypothetical protein Esi_0044_0107 [Ectocarpus sil...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G06160	NO02G06160	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G06160.1	NO02G06160.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G06160.1.cds1	NO02G06160.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G06160.1.cds2	NO02G06160.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G06160.1.cds3	NO02G06160.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G06160.1.cds4	NO02G06160.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1649515..1651791-
coding sequence from alignment at chr2:1649515..1651791-

mRNA sequence

>NO02G06160.1 ID=NO02G06160.1|Name=NO02G06160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp
ATGCGTACTCCAACGATTACGCGGCCGAAGAGGGGGGCTTCAGCCGCAGT
CTTCTTGCCCAGCCTCCTCTCCCTCATCCTTGTCAGCAGCAGCGCAGCCA
ACGCAGCCGTCGCTCATGCCGATCAAGCAAGCACTTGTGGCAGCAATTTC
CAGCACTGTTCCCAATCTGCATCAATATCCACCATGTCCGCTCCCTGCGA
ATCAACGTCCCTTCCTGCTGTGCGTGAGAGCACCTCCCTTAGCCCGACCA
AGGTAAAGAGCTGCAGCACCAGCGTCGAGCCGACGCATGCGCCCTCCTCC
TCCTGCCTCCTCAGCACGGTCTCAGGCGGGTTCATGCCTTCGCCCACTCT
TCCTCCCTTTAGCCGGTCTTTAAATTCCCCTTCCACCGCTGCCGCGGCTG
CGGTGGCGGCAGCCTCCTCCCCTCCTTCTGCGGGCGCACCTGGAGCCCTC
TCCTCTCTCCATGCTTCTGCCTCCCCTTCCATCTCGTCCGCCTCCTCTCG
ATCGGTCTCTCCCACCTCCCCCCTTACCTTACTATCACCCTTCACCGTTC
CCTCTAACTACATCCGGAGCTTCAGCAGCGTGTTAGTCCGTCCCCGACCC
ACAAGAGAGACCTTCGAAGCGGAGGCGGAAGAGGAGAACGAGGGATGGCG
CTTTCTGTACGCTCCTCCCGAGAGCTACGAACACTACCAAGACTTCCAAG
ACCCTTACTACCTGACTCCTTCCACCCTCTCCTCCCTTGCTACCTTTTCC
TCACACGCCGTCACCGCTGCCCCCACTACCGACTCCTCCTCCTCCACTCT
CCGCTCCTCCCCCTTCTTCTCCCCCTCCTCCTCCTTCTTTTCCTCCTCCT
TGTCCTCCTCTTCCTCCCGCCGCTATGAACGTGAGCGTCGAGCTCGAGCT
AACCGCCGGTTAAGAATAACCTCATCCTCCCCCTCCACCTCCTCCTTCTC
CTTCTCCCCCATCTACCGAGATCTCTTCCTTCCATCCTCTCCCGCCTCCC
CCCTGCCCTCCCTCCAGCCATTCCTTACCCACGCTAAGTCCCTCCTCCTC
GCCCTCCTCCGTGCCCCCTCCCACCTCCTCTCCAAGCTGTTCGCGGGCTA
CAGTAACTTATTGGAAACGCATTTCTTCCTCACCTCCCTGGTGCAAGCCA
CCGTCCTGGGGATATGCGGAGACATTGCGGCCCAGAACGTAGAGGTTCTT
GTCCGGGGCGGGCTCCTGAGGGCAGGAGGGCTGGAGGGAGGAATAGTGGC
GGGGGTGCAGAGGTTGCTGCAGGGATTTAAGCCGGACTGGGTCAGGACGA
GGAACGTGGCTGTGTTGACGACCGCGATAGACGGCCTGCTTACCCCCCAA
TACTACGTGTGGATGGAGCGGTGGTTCTCCGAGAAGAAGAGCGTCAAGGT
CATCATGCAGAAGCTGCTGGTGGGCATCTGTATTTTCGGGCCTCTTGCCA
ACGGCACCTTCCTCGCCGGCGTCCCTGTCCTGTCAGCGGGCGCGCTCTCT
GGCTTCAACCTGGCCGTGTGGAAGAAGCAGCTCGCATACGCCACCACCCG
CGACGTCCAGATGTGGAGCTTTTTTTACCCACTTAACTTCCTCTTCGTTC
CCCGGAAGTTCCGACCTCTGGCCACCAACCTCATGGGCCTGTTCTTTCTC
GTGGTCCTCTCCCTCTGTGCCTACAGCGGCTAG

protein sequence of NO02G06160.1

>NO02G06160.1-protein ID=NO02G06160.1-protein|Name=NO02G06160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=561bp
MRTPTITRPKRGASAAVFLPSLLSLILVSSSAANAAVAHADQASTCGSNF
QHCSQSASISTMSAPCESTSLPAVRESTSLSPTKVKSCSTSVEPTHAPSS
SCLLSTVSGGFMPSPTLPPFSRSLNSPSTAAAAAVAAASSPPSAGAPGAL
SSLHASASPSISSASSRSVSPTSPLTLLSPFTVPSNYIRSFSSVLVRPRP
TRETFEAEAEEENEGWRFLYAPPESYEHYQDFQDPYYLTPSTLSSLATFS
SHAVTAAPTTDSSSSTLRSSPFFSPSSSFFSSSLSSSSSRRYERERRARA
NRRLRITSSSPSTSSFSFSPIYRDLFLPSSPASPLPSLQPFLTHAKSLLL
ALLRAPSHLLSKLFAGYSNLLETHFFLTSLVQATVLGICGDIAAQNVEVL
VRGGLLRAGGLEGGIVAGVQRLLQGFKPDWVRTRNVAVLTTAIDGLLTPQ
YYVWMERWFSEKKSVKVIMQKLLVGICIFGPLANGTFLAGVPVLSAGALS
GFNLAVWKKQLAYATTRDVQMWSFFYPLNFLFVPRKFRPLATNLMGLFFL
VVLSLCAYSG*

mRNA from alignment at chr2:1649515..1651791-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G06160.1 ID=NO02G06160.1|Name=NO02G06160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2277bp|location=Sequence derived from alignment at chr2:1649515..1651791- (Nannochloropsis oceanica)
ATGCGTACTCCAACGATTACGCGGCCGAAGAGGGGGGCTTCAGCCGCAGT
CTTCTTGCCCAGCCTCCTCTCCCTCATCCTTGTCAGCAGCAGCGCAGCCA
ACGCAGCCGTCGCTCATGCCGATCAAGCAAGCACTTGTGGCAGCAATTTC
CAGCACTGTTCCCAATCTGCATCAATATCCACCATGTCCGCTCCCTGCGA
ATCAACGTCCCTTCCTGCTGTGCGTGAGAGCACCTCCCTTAGCCCGACCA
AGGTAAAGAGCTGCAGCACCAGCGTCGAGCCGACGCATGCGCCCTCCTCC
TCCTGCCTCCTCAGCACGGTCTCAGGCGGGTTCATGCCTTCGCCCACTCT
TCCTCCCTTTAGCCGGTCTTTAAATTCCCCTTCCACCGCTGCCGCGGCTG
CGGTGGCGGCAGCCTCCTCCCCTCCTTCTGCGGGCGCACCTGGAGCCCTC
TCCTCTCTCCATGCTTCTGCCTCCCCTTCCATCTCGTCCGCCTCCTCTCG
ATCGGTCTCTCCCACCTCCCCCCTTACCTTACTATCACCCTTCACCGTTC
CCTCTAACTACATCCGGAGCTTCAGCAGCGTGTTAGTCCGTCCCCGACCC
ACAAGAGAGACCTTCGAAGCGGAGGCGGAAGAGGAGAACGAGGGATGGCG
CTTTCTGTACGCTCCTCCCGAGAGCTACGAACACTACCAAGACTTCCAAG
ACCCTTACTACCTGACTCCTTCCACCCTCTCCTCCCTTGCTACCTTTTCC
TCACACGCCGTCACCGCTGCCCCCACTACCGACTCCTCCTCCTCCACTCT
CCGCTCCTCCCCCTTCTTCTCCCCCTCCTCCTCCTTCTTTTCCTCCTCCT
TGTCCTCCTCTTCCTCCCGCCGCTATGAACGTGAGCGTCGAGCTCGAGCT
AACCGCCGGTTAAGAATAACCTCATCCTCCCCCTCCACCTCCTCCTTCTC
CTTCTCCCCCATCTACCGAGATCTCTTCCTTCCATCCTCTCCCGCCTCCC
CCCTGCCCTCCCTCCAGCCATTCCTTACCCACGCTAAGTCCCTCCTCCTC
GCCCTCCTCCGTGCCCCCTCCCACCTCCTCTCCAAGCTGTTCGCGGGCTA
CAGTAACTTATTGGAAACGCATTTCTTCCTCACCTCCCTGGTGCAAGCCA
CCGTCCTGGGGATATGCGGAGACATTGCGGCCCAGAACGTAGAGGTTCTT
GTCCGGGGCGGGCTCCTGAGGGCAGGAGGGCTGGAGGGAGGAATAGTGGC
GGGGGTGCAGAGGTTGCTGCAGGGATTTAAGCCGGACTGGGTCAGGACGA
GGAACGTGGCTGTGTTGACGACCGCGATAGGTGGGCGGAGGAGGGAAGGA
GAGAGTGAGGGAGGGGGGGAGGGAGGGAGGGCACCTGTGGGTCTTGGGCC
TCGTTGGTGTTGCCCATGCTTTGTCTAAGCAGTATATGTCACTGATATTT
CTCGTAATTCCTCCCCGTTTTACCCGCCAGACGGCCTGCTTACCCCCCAA
TACTACGTGTGGATGGAGCGGTGGTTCTCCGAGAAGAAGAGCGTCAAGGT
CATCATGCAGAAGCTGCTGGTGGGCATCTGTATTTTCGGGCCTCTTGCCA
ACGGGTAGGTTTTTCCCTCCCTCCCTTCCTCCTTCCCTCCCTCCCTCCCT
TTCCCCATTTGTCTCCGTTCTTCCACCTGTCAGTCGCGTATGTTTGACGT
CGATTCTTCTTGTTGCGCGCCCTGCTTCCCTCCTTCCCTCCTTCTCTCCT
TCCCTCTTTCCCTCTTTCCCTCCTTCCCTCCTTCCCTTCTCTCCTCCCTC
CGCCCCCGGTCGACTTCCTAACTCCACCTCAGAGATTTTCCTCGCTTACC
CCCTCTCCCTCGGGCCCTCCCTCGCTCCATCCCTTCCCAGCACCTTCCTC
GCCGGCGTCCCTGTCCTGTCAGCGGGCGCGCTCTCTGGCTTCAACCTGGC
CGTGTGGAAGAAGCAGCTCGCATACGCCACCACCCGCGACGTCCAGGTGA
GGAGAGAGGGAGGGAGGGAGGGAGGGAGTGTCAATCTCAACCGTGCGCGG
ACCGTTCTACAAGGGCCGTCACGACGGAAAGTACACCCACACCGGCGTCC
CTTCACTCACCTCTGCCTCCCATCCTCTCTCCCCCCTTCCCTTCTCCCCC
TCAGATGTGGAGCTTTTTTTACCCACTTAACTTCCTCTTCGTTCCCCGGA
AGTTCCGACCTCTGGCCACCAACCTCATGGGCCTGTTCTTTCTCGTGGTC
CTCTCCCTCTGTGCCTACAGCGGCTAG

Coding sequence (CDS) from alignment at chr2:1649515..1651791-

>NO02G06160.1 ID=NO02G06160.1|Name=NO02G06160.1|organism=Nannochloropsis oceanica|type=CDS|length=1683bp|location=Sequence derived from alignment at chr2:1649515..1651791- (Nannochloropsis oceanica)
ATGCGTACTCCAACGATTACGCGGCCGAAGAGGGGGGCTTCAGCCGCAGT
CTTCTTGCCCAGCCTCCTCTCCCTCATCCTTGTCAGCAGCAGCGCAGCCA
ACGCAGCCGTCGCTCATGCCGATCAAGCAAGCACTTGTGGCAGCAATTTC
CAGCACTGTTCCCAATCTGCATCAATATCCACCATGTCCGCTCCCTGCGA
ATCAACGTCCCTTCCTGCTGTGCGTGAGAGCACCTCCCTTAGCCCGACCA
AGGTAAAGAGCTGCAGCACCAGCGTCGAGCCGACGCATGCGCCCTCCTCC
TCCTGCCTCCTCAGCACGGTCTCAGGCGGGTTCATGCCTTCGCCCACTCT
TCCTCCCTTTAGCCGGTCTTTAAATTCCCCTTCCACCGCTGCCGCGGCTG
CGGTGGCGGCAGCCTCCTCCCCTCCTTCTGCGGGCGCACCTGGAGCCCTC
TCCTCTCTCCATGCTTCTGCCTCCCCTTCCATCTCGTCCGCCTCCTCTCG
ATCGGTCTCTCCCACCTCCCCCCTTACCTTACTATCACCCTTCACCGTTC
CCTCTAACTACATCCGGAGCTTCAGCAGCGTGTTAGTCCGTCCCCGACCC
ACAAGAGAGACCTTCGAAGCGGAGGCGGAAGAGGAGAACGAGGGATGGCG
CTTTCTGTACGCTCCTCCCGAGAGCTACGAACACTACCAAGACTTCCAAG
ACCCTTACTACCTGACTCCTTCCACCCTCTCCTCCCTTGCTACCTTTTCC
TCACACGCCGTCACCGCTGCCCCCACTACCGACTCCTCCTCCTCCACTCT
CCGCTCCTCCCCCTTCTTCTCCCCCTCCTCCTCCTTCTTTTCCTCCTCCT
TGTCCTCCTCTTCCTCCCGCCGCTATGAACGTGAGCGTCGAGCTCGAGCT
AACCGCCGGTTAAGAATAACCTCATCCTCCCCCTCCACCTCCTCCTTCTC
CTTCTCCCCCATCTACCGAGATCTCTTCCTTCCATCCTCTCCCGCCTCCC
CCCTGCCCTCCCTCCAGCCATTCCTTACCCACGCTAAGTCCCTCCTCCTC
GCCCTCCTCCGTGCCCCCTCCCACCTCCTCTCCAAGCTGTTCGCGGGCTA
CAGTAACTTATTGGAAACGCATTTCTTCCTCACCTCCCTGGTGCAAGCCA
CCGTCCTGGGGATATGCGGAGACATTGCGGCCCAGAACGTAGAGGTTCTT
GTCCGGGGCGGGCTCCTGAGGGCAGGAGGGCTGGAGGGAGGAATAGTGGC
GGGGGTGCAGAGGTTGCTGCAGGGATTTAAGCCGGACTGGGTCAGGACGA
GGAACGTGGCTGTGTTGACGACCGCGATAGACGGCCTGCTTACCCCCCAA
TACTACGTGTGGATGGAGCGGTGGTTCTCCGAGAAGAAGAGCGTCAAGGT
CATCATGCAGAAGCTGCTGGTGGGCATCTGTATTTTCGGGCCTCTTGCCA
ACGGCACCTTCCTCGCCGGCGTCCCTGTCCTGTCAGCGGGCGCGCTCTCT
GGCTTCAACCTGGCCGTGTGGAAGAAGCAGCTCGCATACGCCACCACCCG
CGACGTCCAGATGTGGAGCTTTTTTTACCCACTTAACTTCCTCTTCGTTC
CCCGGAAGTTCCGACCTCTGGCCACCAACCTCATGGGCCTGTTCTTTCTC
GTGGTCCTCTCCCTCTGTGCCTACAGCGGCTAG

Synonyms

Publications