NO02G06000, NO02G06000 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G06000
Unique Name	NO02G06000
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	5646
Alignment location	chr2:1604362..1610007 -

Link to JBrowse

Properties


Property Name	Value
Description	Major facilitator superfamily mfs_1

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1604362..1610007 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0016021	integral component of membrane
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity
GO:0005215	transporter activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036259	MFS_trans_sf
IPR016181	Acyl_CoA_acyltransferase
IPR011701	MFS
IPR000182	GNAT_dom
IPR001958	Tet-R_TetA/multi-R_MdtG

Homology

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BLAST of NO02G06000 vs. NCBI_GenBank
Match: XP_005853362.1 (major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526] >EKU22997.1 major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 385.6 bits (989), Expect = 4.200e-103
Identity = 201/411 (48.91%), Postives = 290/411 (70.56%), Query Frame = 0

Query:  118 QIKRSKVMMRMIAFFYHLSLSILVATWTELLLDGFGNSYSKAAAFLGMCQGVERGIQFLTAATLGNLSDCLGRRPILLSSLILNIVGTLVVVIRPVPTSVLAYFIIHGISNSVLAMLNAITGDL-GAGREDVEGGLTQQFGRLGMAIGLAMMVGPMFGPSIQSINLIYPLYVSIFFLVVSVAIGFAMAESLPPNNSKMSL--ERSNPILGLKKALRYRSFLLFSIPYFLSQMSECVYAFIVIYAKRRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVSDKGCVLIGLFMHGLSMAVMGSAFASWMMFLMMAPRFLAGLKLPGLFSFMSRNVLHTDQGIVQGSIMSLRVLARTVGTPLYGMIFSYFFDKQRIAERG-----EWITGITFYVAGAFDILALLVAVGVFR 521
            Q+ R+K + R + FFYH+S  +L  T+TELLL+ FGN+YS+ AAFLG+C GVERG+QF ++  LGNLSD +GRRPILL SL+L+    +VV I P   SVL YF+I+G SN  L M+NAI  DL  A  +  EG L QQ+GRLGMAIGL+M++GP  GP +Q +N++YP+Y+S+ FL VS+ I ++MAESL   +  +++   ++NP   L++A+R+R F LFS P+FL+Q++ECVY F+V+Y KRR GW Y+++G Y+S++ + +AI+QG+LR+ VPRFVS+ GCV +GLF H L+M V+  A   WMM L + P+  A LK PGL S +++ +    QG++QGS+ SLRVL++ VG P++G I +    +Q   E+G     EW+ G+ F+VA A D+LA  +   +FR
Sbjct:   90 QLVRTKKLCRALGFFYHISFGVLFTTFTELLLNDFGNNYSQTAAFLGVCAGVERGVQFFSSPVLGNLSDSVGRRPILLLSLLLHFASLMVVAILPTRHSVLIYFLINGASNVTLGMINAIVADLCSAQGKTGEGELAQQYGRLGMAIGLSMILGPAIGPVLQKMNVLYPIYLSLAFLGVSIVIAWSMAESLQACHRALNINWRKANPFFVLREAMRFRRFQLFSGPFFLNQLTECVYQFVVLYTKRRFGWGYMTLGFYVSIIGICLAIIQGSLRYFVPRFVSENGCVTVGLFGHALAMGVISVATHGWMMGLTILPQMAASLKNPGLMSALAKGIAPEQQGVLQGSVSSLRVLSKAVGGPIFGAIVALSL-RQAGEEKGPGGGSEWMLGLPFWVAAALDLLAAGICWYIFR 499

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BLAST of NO02G06000 vs. NCBI_GenBank
Match: EWM30067.1 (gcn5-related n-acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 369.0 bits (946), Expect = 4.100e-98
Identity = 191/287 (66.55%), Postives = 220/287 (76.66%), Query Frame = 0

Query:  558 LPLT-ASPLPLTFLQLQRLPASEVRSQCTPRALAPIPLPPEEVQATFGPKPLPLGYRLGLLEPSDLPSLVQLLLVCFPPDLPLQDPDFSPSPPSSSSSPSWLARRLIRPFTQTVNALAFVASRQELRWGLLSRHGERLRTLSLEGQTSESLTLCVEEEPTRRLVAVVELCLRRPDGNLISSIRSSSLRYDRKCRPYLCNLAVAPLYRGQGLGRGLVKAAEGLVRRVWGEEVIYLHLDEADEAAMGLYQRGGYRRVVGVDPTGWYQEVMFEAARKEGRKLRYYSKSVG 844
            LPL+ AS    +        A+  R Q + R LAP+PL P++V+A FGP PLPLGYR GLLEPSDLPSLVQLLLVCFPPDLPL + D      SS+S PS L+R+L+    +  N LAF+ S+QELRWGLLSRHGERL    LEGQ +ESLTLCVEEEPT RLVAVVELCLRRPDGNLI SIRSSSLRYD  CRPYLCNLAV+PLYRGQGLG+ LV+ AE +V   W E+V+YLHLDE D AAM LY + GY RV+GVDPTGWYQEVM EAAR+EG+ L+YY + VG
Sbjct:   30 LPLSDASVTDASAFMFHMPTAALTRRQHSIRPLAPVPLSPQKVRAIFGPNPLPLGYRFGLLEPSDLPSLVQLLLVCFPPDLPLPEADDILHSSSSTSLPSKLSRQLLYFAARATNGLAFLLSKQELRWGLLSRHGERLSHPCLEGQCTESLTLCVEEEPTNRLVAVVELCLRRPDGNLIPSIRSSSLRYDAACRPYLCNLAVSPLYRGQGLGKALVRIAENVVSECWEEDVVYLHLDETDVAAMSLYGKLGYERVIGVDPTGWYQEVMIEAARREGKSLKYYKREVG 316

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BLAST of NO02G06000 vs. NCBI_GenBank
Match: EWM30078.1 (major facilitator superfamily mfs_1 [Nannochloropsis gaditana])

HSP 1 Score: 367.1 bits (941), Expect = 1.500e-97
Identity = 194/290 (66.90%), Postives = 223/290 (76.90%), Query Frame = 0

Query:  109 FGPPHLNPAQIKRSKVMMRMIAFFYHLSLSILVATWTELLLDGFGNSYSKAAAFLGMCQGVERGIQFLTAATLGNLSDCLGRRPILLSSLILNIVGTLVVVIRPVPTSVLAYFIIHGISNSVLAMLNAITGDLGAGREDVEGGLTQQFGRLGMAIGLAMMVGPMFGPSIQSINLIYPLYVSIFFLVVSVAIGFAMAESLPPNNSKMSLERSNPILGLKKALRYRSFLLFSIPYFLSQMSECVYAFIVIYAKRRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVSDK 399
            +GPPHL+   IKR+KV MR+IAFFYHLSLS+LVATWTELLL GF N++SKAAAFLG CQGVERGIQFLTAA+LGNLSDC+GRRP+L +SLILNI+ TL V+++P P +VLAYFII G+SN +LAMLNAI GDL AGRE++EGGLTQQ+GRLGMA                                         AESLPP N  + LE SNP+ GLKKA+RYR FLLF++P+FLSQ+SE VYAFIVIY K+RLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVS K
Sbjct:  127 YGPPHLDRETIKRAKVSMRIIAFFYHLSLSVLVATWTELLLKGFDNNFSKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESLPPQNRHIKLEHSNPLWGLKKAMRYRPFLLFALPFFLSQLSESVYAFIVIYTKQRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVSGK 416

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BLAST of NO02G06000 vs. NCBI_GenBank
Match: EWM30079.1 (major facilitator superfamily mfs_1 [Nannochloropsis gaditana])

HSP 1 Score: 367.1 bits (941), Expect = 1.500e-97
Identity = 194/290 (66.90%), Postives = 223/290 (76.90%), Query Frame = 0

Query:  109 FGPPHLNPAQIKRSKVMMRMIAFFYHLSLSILVATWTELLLDGFGNSYSKAAAFLGMCQGVERGIQFLTAATLGNLSDCLGRRPILLSSLILNIVGTLVVVIRPVPTSVLAYFIIHGISNSVLAMLNAITGDLGAGREDVEGGLTQQFGRLGMAIGLAMMVGPMFGPSIQSINLIYPLYVSIFFLVVSVAIGFAMAESLPPNNSKMSLERSNPILGLKKALRYRSFLLFSIPYFLSQMSECVYAFIVIYAKRRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVSDK 399
            +GPPHL+   IKR+KV MR+IAFFYHLSLS+LVATWTELLL GF N++SKAAAFLG CQGVERGIQFLTAA+LGNLSDC+GRRP+L +SLILNI+ TL V+++P P +VLAYFII G+SN +LAMLNAI GDL AGRE++EGGLTQQ+GRLGMA                                         AESLPP N  + LE SNP+ GLKKA+RYR FLLF++P+FLSQ+SE VYAFIVIY K+RLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVS K
Sbjct:  127 YGPPHLDRETIKRAKVSMRIIAFFYHLSLSVLVATWTELLLKGFDNNFSKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESLPPQNRHIKLEHSNPLWGLKKAMRYRPFLLFALPFFLSQLSESVYAFIVIYTKQRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVSGK 416

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BLAST of NO02G06000 vs. NCBI_GenBank
Match: SJN51389.1 (permease [Sphingobacterium faecium PCAi_F2.5])

HSP 1 Score: 140.2 bits (352), Expect = 3.100e-29
Identity = 109/390 (27.95%), Postives = 187/390 (47.95%), Query Frame = 0

Query:  135 LSLSILVATWTELLLDGFGNSYSKAAAFLGMCQGVERGIQFLTAATLGNLSDCLGRRPILLSSLILNIVGTLVVVIRPVPTSVLAYFIIHGISNSVLAMLNAITGDLGAGREDVEGGLTQQFGRLGMAIGLAMMVGPMFGPSIQSINLIYPLYVSIFFLVVSVAIG-FAMAESLPPNNSK-MSLERSNPILGLKKALRYRSF-LLFSIPYFLSQMSECVYAFIVIYAKRRLGWSYVSVGLYISLLALTIAILQ-GNLRHIVPRFVSDKGCVLIGLFMHGLSMAVMGSAFASWMMFLMMAPRFLAGLKLPGLFSFMSRNVLHTDQGIVQGSIMSLRVLARTVGTPLYGMIFSYFFDKQRIAERGEWITGITFYVAGAFDILALLVAVGVFR 521
            + L I++    +L+ +  G + S A+ + G+        QF  A+ LGNLSD  GRRPILL SL+   +  L++ + P    +     I GI+ +   +  A   D+ +  +       Q FG LG A GL  +VGP+ G  +       P Y +     ++   G F + ESL  +N +      +NP+   K+  +Y     LF   + ++  S  V +    Y   R  W    VG+ +  +   +A++Q G +R I+P+   +K  +LIG  ++ +SM +MG AFA W++FL + P   AG+  P + S +S      +QG +QG + S+  L   +G P+   +F++F DK+       ++ G  FY+      ++ ++A   FR
Sbjct:   21 IGLGIIIPVMPKLIEELIGGTLSDASRYGGLLMFCYALTQFFFASVLGNLSDRFGRRPILLISLLGFSINYLLMGLAPTILWLFIGRFIAGITGASYTVAAAFIADISSQEKK-----AQNFGLLGAAFGLGFIVGPLLGGLLGHYGARIPFYAAAILSFLNFLYGYFLIPESLQKDNRRPFKWRNANPVGAFKQLAKYPHLKQLFFCIFLINIASHAVQSTWSYYTMERYQWDERMVGISLGFVGALVAVVQAGLIRIIIPKLGLEKS-ILIGCGLYMISMPLMGMAFAPWLIFLAIVPYVFAGIAGPAIQSLISNETPSNEQGQIQGGLTSIISLTAIIGPPVMSWLFAHFTDKKEAL----YLPGAPFYLGFVLTAVSFIIACFFFR 400

[Close]

BLAST of NO02G06000 vs. NCBI_GenBank
Match: WP_045755031.1 (tetracycline resistance MFS efflux pump [Sphingobacterium sp. PM2-P1-29] >CDT08173.1 Tetracycline-efflux transporter [Sphingobacterium sp. PM2-P1-29])

HSP 1 Score: 138.7 bits (348), Expect = 8.900e-29
Identity = 108/390 (27.69%), Postives = 188/390 (48.21%), Query Frame = 0

Query:  135 LSLSILVATWTELLLDGFGNSYSKAAAFLGMCQGVERGIQFLTAATLGNLSDCLGRRPILLSSLILNIVGTLVVVIRPVPTSVLAYFIIHGISNSVLAMLNAITGDLGAGREDVEGGLTQQFGRLGMAIGLAMMVGPMFGPSIQSINLIYPLYVSIFFLVVSVAIG-FAMAESLPPNNSK-MSLERSNPILGLKKALRYRSF-LLFSIPYFLSQMSECVYAFIVIYAKRRLGWSYVSVGLYISLLALTIAILQ-GNLRHIVPRFVSDKGCVLIGLFMHGLSMAVMGSAFASWMMFLMMAPRFLAGLKLPGLFSFMSRNVLHTDQGIVQGSIMSLRVLARTVGTPLYGMIFSYFFDKQRIAERGEWITGITFYVAGAFDILALLVAVGVFR 521
            + L I++    +L+ +  G + S A+ + G+        QF  A+ LGNLSD  GRRPILL SL+   +  L++ + P    +     I GI+ +   +  A   D+ +  +       Q FG LG A GL  +VGP+ G  +       P Y +     ++   G F + ESL  +N +    + +NP+   K+  +Y     LF   + ++  +  V +    Y   R  W    VG+ +  +   +A++Q G +R I+P+   +K  +LIG  ++ +SM +MG AFA W++FL + P   AG+  P + S +S      +QG +QG + S+  L   +G P+   +F++F DK+       ++ G  FY+      ++ ++A   FR
Sbjct:   21 IGLGIIIPVMPKLIEELIGGTLSDASRYGGLLMFCYALTQFFFASVLGNLSDRFGRRPILLISLLGFSINYLLMGLAPTILWLFIGRFIAGITGASYTVAAAFIADISSQEKK-----AQNFGLLGAAFGLGFIVGPLLGGLLGHYGARIPFYAAAILSFLNFLYGYFLIPESLQKDNRRPFKWKNANPVGAFKQLAKYPHLKQLFFCIFLINVSAHAVQSTWSYYTMERYQWDERMVGISLGFVGALVALVQAGLIRIIIPKLGLEKS-ILIGSGLYMISMPLMGLAFAPWLIFLAIVPYVFAGIAGPAIQSLISNETPSNEQGQIQGGLTSIISLTAIIGPPVMSWLFAHFTDKKEAL----YLPGAPFYLGFVLTAVSFIIACFFFR 400

[Close]

BLAST of NO02G06000 vs. NCBI_GenBank
Match: WP_021190239.1 (tetracycline resistance MFS efflux pump [Sphingobacterium sp. IITKGP-BTPF85] >KKX48223.1 MFS transporter [Sphingobacterium sp. IITKGP-BTPF85])

HSP 1 Score: 137.5 bits (345), Expect = 2.000e-28
Identity = 108/390 (27.69%), Postives = 188/390 (48.21%), Query Frame = 0

Query:  135 LSLSILVATWTELLLDGFGNSYSKAAAFLGMCQGVERGIQFLTAATLGNLSDCLGRRPILLSSLILNIVGTLVVVIRPVPTSVLAYFIIHGISNSVLAMLNAITGDLGAGREDVEGGLTQQFGRLGMAIGLAMMVGPMFGPSIQSINLIYPLYVSIFFLVVSVAIG-FAMAESLPPNNSK-MSLERSNPILGLKKALRYRSF-LLFSIPYFLSQMSECVYAFIVIYAKRRLGWSYVSVGLYISLLALTIAILQ-GNLRHIVPRFVSDKGCVLIGLFMHGLSMAVMGSAFASWMMFLMMAPRFLAGLKLPGLFSFMSRNVLHTDQGIVQGSIMSLRVLARTVGTPLYGMIFSYFFDKQRIAERGEWITGITFYVAGAFDILALLVAVGVFR 521
            + L I++    +L+ +  G + S A+ + G+        QF  A+ LGNLSD  GRRPILL SL+   +  L++ + P    +     I GI+ +   +  A   D+ +  +       Q FG LG A GL  +VGP+ G  +       P + +     ++   G F + ESL   N +    + +NP+   K+  +Y     LF   + ++  S  V +    Y   R  W    VG+ +  + + +AI+Q G +R I+P+   +K  +LIG  ++ +SM +MG A+A W++FL + P   AG+  P + S +S      +QG +QG + S+  L   +G P+   +F++F DK+       ++ G  FY+      ++ +VA   F+
Sbjct:   21 IGLGIIIPVMPKLIEELIGGTLSDASRYGGLLMFCYALTQFFFASVLGNLSDRFGRRPILLISLLGFSINYLLMGLAPTILWLFIGRFIAGITGASYTVAAAFIADISSHEKK-----AQNFGLLGAAFGLGFIVGPLLGGLLGHYGARIPFFAAALLSFLNFLYGYFFIPESLKKENRRPFRWKNANPVGAFKQLAKYPHLKQLFFCIFLINISSHAVQSTWSYYTMERFQWDERMVGISLGFIGMLLAIVQAGLIRIIIPKLGLEKS-ILIGSGLYVISMPLMGMAYAPWLIFLAVIPYVFAGIAGPAIQSLVSNETPSNEQGQIQGGLTSIISLTAIIGPPVMSWLFAHFTDKKEAL----YLPGAPFYLGFVLTAISFIVACFFFK 400

[Close]

BLAST of NO02G06000 vs. NCBI_GenBank
Match: WP_108158293.1 (MFS transporter [Sphingobacterium faecium] >PTX12897.1 DHA1 family tetracycline resistance protein-like MFS transporter [Sphingobacterium faecium])

HSP 1 Score: 137.5 bits (345), Expect = 2.000e-28
Identity = 107/390 (27.44%), Postives = 188/390 (48.21%), Query Frame = 0

Query:  135 LSLSILVATWTELLLDGFGNSYSKAAAFLGMCQGVERGIQFLTAATLGNLSDCLGRRPILLSSLILNIVGTLVVVIRPVPTSVLAYFIIHGISNSVLAMLNAITGDLGAGREDVEGGLTQQFGRLGMAIGLAMMVGPMFGPSIQSINLIYPLYVSIFFLVVSVAIG-FAMAESLPPNNSK-MSLERSNPILGLKKALRYRSF-LLFSIPYFLSQMSECVYAFIVIYAKRRLGWSYVSVGLYISLLALTIAILQ-GNLRHIVPRFVSDKGCVLIGLFMHGLSMAVMGSAFASWMMFLMMAPRFLAGLKLPGLFSFMSRNVLHTDQGIVQGSIMSLRVLARTVGTPLYGMIFSYFFDKQRIAERGEWITGITFYVAGAFDILALLVAVGVFR 521
            + L I++    +L+ +  G + S A+ + G+        QF  A+ LGNLSD  GRRPILL SL+   +  L++ + P    +     I GI+ +   +  A   D+ +  +       Q FG LG A GL  +VGP+ G  +       P Y +     ++   G F + ESL  +N +    + +NP+   K+  +Y     LF   + ++  +  V +    Y   R  W    VG+ +  +   +A++Q G +R I+P+   +K  +LIG  ++ +SM +MG AFA W++FL + P   AG+  P + S +S      +QG +QG + S+  L   +G P+   +F++F DK+       ++ G  FY+      ++ ++A   F+
Sbjct:   21 IGLGIIIPVMPKLIEELIGGTLSDASRYGGLLMFCYALTQFFFASVLGNLSDRFGRRPILLISLLGFSINYLLMGLAPTILWLFIGRFIAGITGASYTVAAAFIADISSQEKK-----AQNFGLLGAAFGLGFIVGPLLGGLLGHYGARIPFYAAAILSFLNFLYGYFLIPESLQKDNRRPFKWKNANPVGAFKQLAKYPHLKQLFFCIFLINVSAHAVQSTWSYYTMERYQWDERMVGISLGFVGALVALVQAGLIRIIIPKLGLEKS-ILIGSGLYMISMPLMGLAFAPWLIFLAIVPYVFAGIAGPAIQSLISNETPSNEQGQIQGGLTSIISLTAIIGPPVMSWLFAHFTDKKEAL----YLPGAPFYLGFILTAISFIIACFFFK 400

[Close]

BLAST of NO02G06000 vs. NCBI_GenBank
Match: WP_038700972.1 (tetracycline resistance MFS efflux pump [Sphingobacterium sp. ML3W] >AIM38748.1 MFS transporter [Sphingobacterium sp. ML3W])

HSP 1 Score: 134.4 bits (337), Expect = 1.700e-27
Identity = 108/390 (27.69%), Postives = 187/390 (47.95%), Query Frame = 0

Query:  135 LSLSILVATWTELLLDGFGNSYSKAAAFLGMCQGVERGIQFLTAATLGNLSDCLGRRPILLSSLILNIVGTLVVVIRPVPTSVLAYFIIHGISNSVLAMLNAITGDLGAGREDVEGGLTQQFGRLGMAIGLAMMVGPMFGPSIQSINLIYPLYVSIFFLVVSVAIG-FAMAESLPPNNSK-MSLERSNPILGLKKALRYRSF-LLFSIPYFLSQMSECVYAFIVIYAKRRLGWSYVSVGLYISLLALTIAILQ-GNLRHIVPRFVSDKGCVLIGLFMHGLSMAVMGSAFASWMMFLMMAPRFLAGLKLPGLFSFMSRNVLHTDQGIVQGSIMSLRVLARTVGTPLYGMIFSYFFDKQRIAERGEWITGITFYVAGAFDILALLVAVGVFR 521
            + L I++    +L+ +  G + S A+ + G+        QF  A+ LGNLSD  GRRPILL SL+   V  L++ + P    +     I GI+ +   +  A   D+ +  +       Q FG LG A GL  ++GP+ G  +       P Y +     ++   G F + ESL   N +    + +NP+   K+  ++     LF   + ++  +  V +    Y   R  W    VGL +  +   +AI+Q G LR I+P+   +K  +LIG  ++ ++M +MG+A+A W++F+ + P   AG+    + S +S      +QG +QG + S+  L   +G P+   +F++F DK+       +I G  FY+      ++ +VA   FR
Sbjct:   21 IGLGIIIPVMPKLIEELIGGTLSDASRYGGLLMFSYALTQFFFASVLGNLSDRFGRRPILLISLLGFSVNYLLMGLAPTILWLFIGRFIAGITGASYTVAAAFIADISSHEKK-----AQNFGLLGAAFGLGFIIGPLLGGVLGHYGARIPFYAAAILSFMNFLYGYFFIPESLKKENRRPFKWKNANPVGAFKQLAKFPHLKQLFICIFLINIAAHAVQSTWSYYTMERYHWDERMVGLSLGFIGTLLAIVQAGLLRIIIPKLGLEKS-ILIGSALYMIAMPLMGAAYAPWLLFVAIVPYVFAGITGTAIQSLVSNETPANEQGQIQGGLTSIISLTAIIGPPVMSWLFAHFTDKKEAL----YIPGAPFYLGFVLTAISFIVACFFFR 400

[Close]

BLAST of NO02G06000 vs. NCBI_GenBank
Match: WP_067053884.1 (MFS transporter [Mucilaginibacter sp. L294])

HSP 1 Score: 134.0 bits (336), Expect = 2.200e-27
Identity = 105/389 (26.99%), Postives = 185/389 (47.56%), Query Frame = 0

Query:  135 LSLSILVATWTELLLDGFGNSYSKAAAFLGMCQGVERGIQFLTAATLGNLSDCLGRRPILLSSLILNIVGTLVVVIRPVPTSVLAYFIIHGISNSVLAMLNAITGDLGAGREDVEGGLTQQFGRLGMAIGLAMMVGPMFGPSIQSINLIYPLYVSIFFLVVSVAIG-FAMAESLPPNNSK-MSLERSNPILGLKKALRYRSFL-LFSIPYFLSQMSECVYAFIVIYAKRRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVSDKGCVLIGLFMHGLSMAVMGSAFASWMMFLMMAPRFLAGLKLPGLFSFMSRNVLHTDQGIVQGSIMSLRVLARTVGTPLYGMIFSYFFDKQRIAERGEWITGITFYVAGAFDILALLVAVGVFR 521
            + L+I++  + +L+      + S+A+ + G+       +QFL +  +GNLSD  GRRP+LL SL+   +  + +   P    +    II GI+ +     +A   D+    +       Q FG +G+A GL  ++GP  G  +   N+ YP Y +    +++ A G F + ESL   + +    +R+NP+  L +  +Y + + L +  + +   +  V +    Y   +  WS  ++G  ++ +   IA++QG L  +V   +     + IGL ++ L M + G A  SWMMF  M P  L G+  P L S M+  V    QG +QG++  L  L+   G      IF+YF            + G  ++VA A  ++  ++AV  F+
Sbjct:   25 IGLAIIIPVFPKLIETLIHGNISQASKYSGLLVMAYAIMQFLFSPLVGNLSDKYGRRPVLLFSLLGFGIDYIFMAFAPTIGWLFVGRIIAGITGASFTTASAYIADVSEPEK-----RAQNFGMIGVAFGLGFIIGPFIGGVLGDFNVKYPFYAAAALALINAAYGFFILPESLDKEHRREFDWKRANPVGSLLQLKKYPAVIGLATCLFIIYIATHAVQSVWTYYTIEKFNWSIRTIGYSLTFIGAMIALVQGGLIRVVIPKIGQNRSIWIGLLLYALGMLLFGLANKSWMMFAFMIPYSLGGICGPALQSVMTSEVPKNAQGELQGALTGLMSLSAVFGPLFMTWIFAYFTADNAPVH----LPGAPYFVASALMLIGAILAVRSFK 404

The following BLAST results are available for this feature:

BLAST of NO02G06000 vs. NCBI_GenBank

BLAST of NO02G06000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_005853362.1	4.200e-103	48.91	major facilitator superfamily mfs 1, partial [Nann...	[more]
EWM30067.1	4.100e-98	66.55	gcn5-related n-acetyltransferase [Nannochloropsis ...	[more]
EWM30078.1	1.500e-97	66.90	major facilitator superfamily mfs_1 [Nannochlorops...	[more]
EWM30079.1	1.500e-97	66.90	major facilitator superfamily mfs_1 [Nannochlorops...	[more]
SJN51389.1	3.100e-29	27.95	permease [Sphingobacterium faecium PCAi_F2.5]	[more]
WP_045755031.1	8.900e-29	27.69	tetracycline resistance MFS efflux pump [Sphingoba...	[more]
WP_021190239.1	2.000e-28	27.69	tetracycline resistance MFS efflux pump [Sphingoba...	[more]
WP_108158293.1	2.000e-28	27.44	MFS transporter [Sphingobacterium faecium] >PTX128...	[more]
WP_038700972.1	1.700e-27	27.69	tetracycline resistance MFS efflux pump [Sphingoba...	[more]
WP_067053884.1	2.200e-27	26.99	MFS transporter [Mucilaginibacter sp. L294]	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL019	nonsL019	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL017	nonsL017	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR032	ncniR032	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR004	ngnoR004	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR001	ngnoR001	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK007304	NSK007304	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO02G06000.1	NO02G06000.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627545	gene_1195	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100173g10	gene580	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO02G06000.1	NO02G06000.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO02G06000 ID=NO02G06000|Name=NO02G06000|organism=Nannochloropsis oceanica|type=gene|length=5646bp
ATGAGTGAGCTCGATCTACCTGCGACGGAGTCTGCGGTCTATTCTTCTGA
AGCGCAAGACTCCCTTGGCTTGGAAGAGAGCAAGGAAAGCAGTACATTCA
GCAAAATGCACAACCTTAGCTACGAGGGCAAGGAGGAGATGGGCGAGGAG
GAGATGGGCGAGGAGGAGGGGGAGGGAGAAGGGGAGCAAGAAGAGGATAT
AATTAAGGCGGAGGGTGGAATGGCGACATTGGTTGGAATGGAACTGACAA
ATGCGCCAGCCGACACGACGTCGGCCCCGAAGAAGAGGAAAAAGAGAAGG
AGGAAGAGACGCGCGGTACGACGTTTCGGGCCTCCGCATTTGAATCCCGC
ACAAATCAAACGCTCCAAGgtttgtttgtctagaaatgatctgggtggga
ggccggggacggagtggcgagggaaaggaagatgtgggagggtggaggag
cgcagcgacccaaaagtatttgtgtgatgtgagctaggaaccgaaagaca
accttaattttcttccctctatctctctatccctctgtccctttccctct
tctcgcccagGTAATGATGCGAATGATTGCCTTCTTCTACCACCTCTCCC
TCTCCATCCTCGTGGCCACCTGGACTGAGCTGCTACTGGATGGTTTCGGC
AATAGTTACTCCAAAGCAGCGGCGTTCTTAGGgtaggaaggaaggggaaa
tatataaggtgtggaggtgatctgtgcctttcggctctaaccctttcctc
acactcttccgcctgccctccttccctccttcctcctttcccccctccct
tcctccgcttgtgaccagCATGTGCCAAGGCGTAGAGCGGGGCATTCAAT
TTTTAACGGCCGCCACGCTGGGCAACCTGAGCGACTGCCTGGGGAGACGG
CCCATATTGCTGAGCTCCCTCATCCTGAACATCGTGGGGACGCTAGTGGT
GGTCATCAGGCCGgtgaggaggggggggggacgaagggtgcggggtgtgg
cttggtgggtgtgtttgtgtgggtgtatgtgtgaaggagtgtgtatatgt
gtgtatacgtgtgcgggtggtggagtggaggtgcatatagatatgtgtgc
cccccccctcggagccttgtggctcccatgtgcatctcgccaccacctcc
acctccctccccctccctccccctccctccccctccctccttccctccct
ccttccctccctatcccagGTCCCCACCTCCGTCCTGGCCTATTTCATCA
TCCACGGCATCAGTAACTCAGTCCTTGCCATGCTTAATGCCATCACGGGG
GATCTAGGTGCAGGCCGGGAGGACGTGGAGGGAGGTCTAACCCAGCAATT
TGGCCGACTTGgtacgccctccctccctcccgccctccctccctccctcc
ctccctccctccctccctccctcccgccctccctccttccttccttcctt
tccttctttccttgtttcgtctgacaatcgatcctgcccaggctcttcaa
cactccctgctcttccaacgcccccaacccctcgccctccctccctccct
ccctccccatccagGCATGGCCATCGGTCTGGCTATGATGGTAGGGCCCA
TGTTCGGGCCCTCCATCCAATCAATCAACgtaggcaagccctccctccct
cccttcctccctccctccctccctccttccctccctcctcaatcttggtc
cgcaatctacccctctcccacctccctccctccctccctccctccccctc
cagTTGATCTACCCCCTCTACGTCTCCATCTTCTTCCTCGTCGTCTCGGT
CGCCATCGGgtatggacctcgtacacagcacccttcgctccctccctccc
tccctccctccctccctccaaccattttctcaccctccctccctccctcc
ctccctccctccctccctccctccctccctccctagCTTCGCCATGGCCG
AGTCCCTCCCTCCCAACAACTCCAAGATGTCTCTCGAACGCAGCAACCCC
ATCCTGGGGCTCAAAAAAGCCTTGAGgtacggagggagggagggagggag
ggagggagggagggaggaggggaagactgatggacggggacgttgatgtg
gaaggaaggagggagggagggagggagggagggagggagggagggagggg
agggacagaggacgaacgatcttctgatgttgaaatgtgcttgtgcttgt
ggtgtttctccaccgcaggtttccaattccttctctccctccctccctcc
ctcccttcctcccaagGTACCGGTCGTTCCTCCTCTTCTCCATCCCCTAC
TTCCTCTCTCAGATGTCCGAGTGCGTCTACGCCTTTATCGTCATCTACGC
CAAACGCCGCCTTGGATGgtacgtcctccctccctccctccctccctccc
tccctctctccctccctccctcccattctctctctagatcatacgtctct
gtaggcctgtactttttatccctcctggctctcacccctccctccctccc
tccctccctccctccctccctccctccctccctccctctctctagatcat
acgtctttgtaggcctgtactttttatccctcctggctctcacccctccc
tccctccctccctccctccctccctccctccctccctccctccctccctc
tagGTCATACGTCTCTGTAGGCCTGTACATATCCCTCCTGGCTCTCACCA
TCGCCATCCTCCAGGGAAACCTCCGCCATATCGTACCGCGCTTCGTTTCG
Ggtacgccctccctccctccctccctccctccctccctccctctctctct
ccctctccccctcccccgggtcagatgctcgtccttatcccatcctcttt
cacttcttcccgtccctccctccctccctccctccctccccccccctcag
ACAAGGGCTGCGTCCTCATCGGTCTCTTCATGCACGGTTTGAGCATGGCC
GTCATGGGCAGTGCCTTTGCTTCATGGATGATGTTTCTCATGgtacctcc
cctccctccctccctccctccctccctccttacaaccccaccactcattc
caccctcccgtccctcttgtctttcccgtcccttcctccctccctccctc
cctccctccctccctccctttctagATGGCTCCCCGATTTTTGGCGGGTC
TCAAACTGCCCGGGCTCTTCAGCTTCATGAGCAGAAATGTGCTTCACACC
GATCAAGgtacgccctccctccctcccggcctccctccctccctcatacg
caccctcgtgcgccgaaagaaagactgcccttccactgacctttccctcc
ctccctatctcccatcctccctcctcagGCATCGTGCAAGGCTCTATCAT
GAGTCTCCGCGTCCTGGCCCGCACCGTCGGCACGCCGTTATATGGCATGA
TATTCAGCTACTTCTTTGACAAGCAGCGCATTGCCGAGgtacgtctgatt
ttctccattctatcctttgccattataatgtattgatcctcctcctccct
tcctccgtcccttccgccctccctcccttcctcaagCGTGGGGAATGGAT
CACCGGCATCACTTTCTACGTGGCCGGCGCCTTCGACATCTTAGCCCTTC
TCGTCGCCGTGGGGGTCTTTCGTATTTTGTTTAAAGAGGAGAACGTGAAT
GAGGGTGAGGGGGAGGGAGAGATAGGGGTGAAGAAGGAGAATAGTGGAGT
GGAGCTATTGGAGGAAGGGAGGAGACAGgtgggggcgaaatcgtaaggaa
gggaggaggaaggaagggagggcttgtacacgtgaaacagaatggatata
gatcgggatgatgataacagtagtaggaggagtgccatcttacatagaga
gggacgaagcgctctggatgagaaaccacaacgcatgcacggacaggctg
aggcccttgaggatggagagaatttgcaaggaggacaatgctgtcctttg
tattggaaagaatgaaaggattactgtaagtgcttcaatacggttgcctc
ttgattaaagtgctttcattgctttattcgaaagttaatggcctttcttg
tgttcgttaaaaccagggaggaaggaaggaggagggaggggaggttgata
aggggcgaacataggcatatgtgtgtgtcggagccgcatatttatcaatc
aataagtgccgcactgaactcgagatgggtccaatgcattcggcctgtgc
ggctcactcatggggaagctatgtcttgcacggtacagtgtcggcctgct
tcggcacgcggtatacaaagccgtcctggaggagggtgcattcaaagaaa
tttagtcgacaggatcctccaatttgatgagataagctcaccgccagacc
atgctattgcgacatacagggttgcaggatgaggccgctgcaggcgcgtc
cagcacaccgccatggccctccagaaactttcatcgtactcgccatcctc
ctcctccttctcctgctccagTGCTGCCTGCCGCTCACCGCCAGCCCCCT
TCCCTTGACATTTTTGCAGCTGCAGCGGCTCCCAGCTTCAGAAGTACGTA
GCCAATGTACCCCTCGGGCCCTCGCACCCATACCCCTACCGCCAGAAGAA
Ggtacgacgtggtggcgatttttcaaccttttcaccctcttgtgtctatt
ccccctccctccctctcatgacacctttcgttcccgacacagcactaaaa
cttcggcatcattcattccattgcatcctactttcttgcagtcctttctt
atcatcattgggtcgctattcatcccttccatcaccacccctcaactccc
tccgcagTGCAAGCCACATTTGGGCCGAAACCCCTCCCGCTCGGATATCG
CCTCGGCCTCCTCGAGCCCTCCGACCTCCCCTCCCTCGTCCAGCTTCTTC
TCGTCTGCTTCCCTCCCGACCTACCCCTGCAGGATCCCGATTTCTCCCCT
TCCCCCCCCTCCTCCTCCTCTTCCCCCTCGTGGCTGGCCCGCCGCCTCAT
CCGCCCCTTTACGCAAACCGTCAACGCCTTGGCCTTCGTTGCCTCCAGGC
AAGAACTCCGCTGGGGACTCCTCTCCCGGCACGGAGAACGCCTGCGCACC
CTGTCCCTGGAGGGTCAGACGAGCGAAAGCCTGACTTTATGCGTGGAGGA
AGAACCCACCCGCCGCCTAGTGGCGGTCGTTGAGCTGTGCCTCCGTCGGC
CGGACGGGAACCTTATATCGAGCATTCGTTCGTCCTCTCTCAGATACGAT
AGGAAATGCCGCCCTTATCTCTGCAATCTCGCTGTTGCCCCCCTCTATCG
TGGCCAGGGGCTCGGCCGAGGCCTGGTCAAGGCCGCGGAGGGATTGGTGC
GAAGGGTGTGGGGAGAGGAGGTGATTTATTTGCATCTCGATGAAGCTGAC
GAGGCAGCGATGGGACTCTATCAACGGGGAGGGTATAGGAGGGTGGTGGG
CGTTGATCCCACTGGCTGGTACCAAGAGGTGATGTTCGAGGCTGCTAGGA
AGGAGGGAAGGAAGTTGAGATATTACAGTAAGAGTGTGGGGGAGGAGGAG
GAAGGAAAGGAGGAGCAGGATGATGAGAGGGGAGGAGGTGAAGAGGGAGG
TTGGAGAGGCGGCAGCAGAAATGAGGGAGGAGAGCGGGACAGGTGA

protein sequence of NO02G06000.1

>NO02G06000.1-protein ID=NO02G06000.1-protein|Name=NO02G06000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=878bp
MSELDLPATESAVYSSEAQDSLGLEESKESSTFSKMHNLSYEGKEEMGEE
EMGEEEGEGEGEQEEDIIKAEGGMATLVGMELTNAPADTTSAPKKRKKRR
RKRRAVRRFGPPHLNPAQIKRSKVMMRMIAFFYHLSLSILVATWTELLLD
GFGNSYSKAAAFLGMCQGVERGIQFLTAATLGNLSDCLGRRPILLSSLIL
NIVGTLVVVIRPVPTSVLAYFIIHGISNSVLAMLNAITGDLGAGREDVEG
GLTQQFGRLGMAIGLAMMVGPMFGPSIQSINLIYPLYVSIFFLVVSVAIG
FAMAESLPPNNSKMSLERSNPILGLKKALRYRSFLLFSIPYFLSQMSECV
YAFIVIYAKRRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVSDKGC
VLIGLFMHGLSMAVMGSAFASWMMFLMMAPRFLAGLKLPGLFSFMSRNVL
HTDQGIVQGSIMSLRVLARTVGTPLYGMIFSYFFDKQRIAERGEWITGIT
FYVAGAFDILALLVAVGVFRILFKEENVNEGEGEGEIGVKKENSGVELLE
EGRRQCCLPLTASPLPLTFLQLQRLPASEVRSQCTPRALAPIPLPPEEVQ
ATFGPKPLPLGYRLGLLEPSDLPSLVQLLLVCFPPDLPLQDPDFSPSPPS
SSSSPSWLARRLIRPFTQTVNALAFVASRQELRWGLLSRHGERLRTLSLE
GQTSESLTLCVEEEPTRRLVAVVELCLRRPDGNLISSIRSSSLRYDRKCR
PYLCNLAVAPLYRGQGLGRGLVKAAEGLVRRVWGEEVIYLHLDEADEAAM
GLYQRGGYRRVVGVDPTGWYQEVMFEAARKEGRKLRYYSKSVGEEEEGKE
EQDDERGGGEEGGWRGGSRNEGGERDR*

Synonyms

Publications