NO02G05880, NO02G05880 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G05880 vs. NCBI_GenBank
Match: XP_016997795.1 (PREDICTED: RNA-binding protein 5-A [Drosophila takahashii]) HSP 1 Score: 80.1 bits (196), Expect = 3.400e-11 Identity = 67/210 (31.90%), Postives = 88/210 (41.90%), Query Frame = 0 Query: 586 CLLCRRAFNSWDQWRKHEAKSALHAENLAK---QLAEGVMLQQQQQYRDRAEERRQLYGQDDRPKSLKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKTDVETAGVDKPLGEGNVGHQMLRSLGWKEGEGLGRDKGGITEPVRADQALLSGSKSGVGAGGGGLEGRRGGGRRPSAREVYDSKEVQKAMMRARYESV 793 CLLC+RAF S D +KH S LH ENLAK A ++ + YRDRA+ERR YG+ D P + R+ D A P+ NVG ++L+ +GW EG+GLGR G T+ + AD G + VG G + G P YD K K M+ RYE+V Sbjct: 839 CLLCKRAFQSLDILQKHLKMSTLHKENLAKLNQNSAGDAIIDEALSYRDRAKERRLKYGESDPPPPNRS----------------------------RERFEQEIKTLQTRQKDPSGAAPAMPISSSNVGSRLLQKMGWSEGQGLGRKNQGRTQIIEAD-----GRSNNVGLG-----NKSAGHMMPG----YDYKSYIKMKMKQRYENV 1006
BLAST of NO02G05880 vs. NCBI_GenBank
Match: EPB92019.1 (hypothetical protein HMPREF1544_01082 [Mucor circinelloides f. circinelloides 1006PhL]) HSP 1 Score: 77.8 bits (190), Expect = 1.700e-10 Identity = 59/195 (30.26%), Postives = 86/195 (44.10%), Query Frame = 0 Query: 586 CLLCRRAFNSWDQWRKHEAKSALHAENL--------AKQLAEGVMLQQQQ-----QYRDRAEERRQLYGQDDRPKSLKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKTDVETAGVDKPLGEGNVGHQMLRSLGWKEGEGLGRDKGGITEPVRADQ-----ALLSGSKSGVGAGGGGLEGR 763 CLLC+R F +H+A S LH NL AK + + +QQQ +YR+RA ERRQ YGQ ++P R+ + A + P+ + N G +ML ++GWK+GEGLG+D GI +PV+A+ + S +K VG+GGG + R Sbjct: 104 CLLCQRKFKQKSDLERHQAISELHKNNLKDPVAVNKAKLKLQFIQTEQQQEEQTVEYRNRAAERRQAYGQPEKP----------------------------VLSPPSSPPHRQQSTMSKREQSINQASMYTPIADDNKGARMLANMGWKKGEGLGKDGSGILDPVKAESYAQSAGIGSTTKRDVGSGGGSYQSR 270
BLAST of NO02G05880 vs. NCBI_GenBank
Match: XP_017061079.1 (PREDICTED: RNA-binding protein 5-A [Drosophila ficusphila]) HSP 1 Score: 77.8 bits (190), Expect = 1.700e-10 Identity = 66/209 (31.58%), Postives = 86/209 (41.15%), Query Frame = 0 Query: 586 CLLCRRAFNSWDQWRKHEAKSALHAENLAK---QLAEGVMLQQQQQYRDRAEERRQLYGQDDRPKSLKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKTDVETAGVDKPLGEGNVGHQMLRSLGWKEGEGLGRDKGGITEPVRADQALLSGSKSGVGAGGGGLEGRRGGGRRPSAREVYDSKEVQKAMMRARYES 792 CLLC+RAF S D +KH S LH ENLAK G + + YRDRA+ERR YG+ D P + R+ D A P+ NVG ++L+ +GW EG+GLGR G T+ + AD G + VG G + G P D K K MM+ RYE+ Sbjct: 834 CLLCKRAFQSLDILQKHLKMSTLHKENLAKLNQSTGGGAAVDEGLSYRDRAKERRLKYGESDPPPPNRS----------------------------RERFEQEIKTLQTRQKDSSAAAPAMPISSSNVGSRLLQKMGWSEGQGLGRKNQGRTQIIEAD-----GRSNNVGL------GNKSGHMIPG----NDYKSYIKKMMKQRYEN 999
BLAST of NO02G05880 vs. NCBI_GenBank
Match: CDS07132.1 (hypothetical protein LRAMOSA09655 [Lichtheimia ramosa]) HSP 1 Score: 77.4 bits (189), Expect = 2.200e-10 Identity = 60/186 (32.26%), Postives = 76/186 (40.86%), Query Frame = 0 Query: 586 CLLCRRAFNSWDQWRKHEAKSALHAENLA---------------KQLAEGVMLQQ-QQQYRDRAEERRQLYGQDDRPKSLKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKTDVETAGVDKPLGEGNVGHQMLRSLGWKEGEGLGRDKGGITEPVRADQALLSGSKSGVGAG 756 CLLC+R F + +H+ S LH +NLA K AE Q QQ YR+RA ERRQ YGQ +RP K +DKPL + NVG +ML+ +GWK GEGLG+D GI +P+ A+Q GVG G Sbjct: 125 CLLCQRKFKTLQDLERHQELSELHKKNLADPVCVGKAQMKMRYVKNEAEQAQEQMAQQNYRNRAAERRQAYGQPERP----------------PLPLSTSPPPREPKRQPLSLTQLRAKKQQMAKETSSGTSLDKPLNDDNVGARMLQQMGWKRGEGLGKDASGIVDPIAAEQ-----YAQGVGLG 289
BLAST of NO02G05880 vs. NCBI_GenBank
Match: XP_016997771.1 (PREDICTED: RNA-binding protein 5-A isoform X1 [Drosophila takahashii]) HSP 1 Score: 77.4 bits (189), Expect = 2.200e-10 Identity = 65/209 (31.10%), Postives = 87/209 (41.63%), Query Frame = 0 Query: 586 CLLCRRAFNSWDQWRKHEAKSALHAENLAK---QLAEGVMLQQQQQYRDRAEERRQLYGQDDRPKSLKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKTDVETAGVDKPLGEGNVGHQMLRSLGWKEGEGLGRDKGGITEPVRADQALLSGSKSGVGAGGGGLEGRRGGGRRPSAREVYDSKEVQKAMMRARYES 792 CLLC+RAF S D +KH S LH ENLAK G + + YRDRA+ERR YG+ D P + R+ D A P+ NVG ++++ +GW EG+GLGR G T+ + AD G + VG G + G +P D K K MM+ RYE+ Sbjct: 817 CLLCKRAFQSLDILQKHLKMSNLHKENLAKLKQNSGGGAAIDEGLSYRDRAKERRLKYGESDPPPPNRS----------------------------RERFEQEIKTLQTRQKDASGATPAMPISSSNVGSRLMQKMGWSEGQGLGRKNQGRTQIIEAD-----GRTNNVGL------GNKSGNMQPG----NDYKSYIKKMMKQRYEN 982
BLAST of NO02G05880 vs. NCBI_GenBank
Match: XP_016997772.1 (PREDICTED: RNA-binding protein 5-A isoform X2 [Drosophila takahashii]) HSP 1 Score: 77.4 bits (189), Expect = 2.200e-10 Identity = 65/209 (31.10%), Postives = 87/209 (41.63%), Query Frame = 0 Query: 586 CLLCRRAFNSWDQWRKHEAKSALHAENLAK---QLAEGVMLQQQQQYRDRAEERRQLYGQDDRPKSLKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKTDVETAGVDKPLGEGNVGHQMLRSLGWKEGEGLGRDKGGITEPVRADQALLSGSKSGVGAGGGGLEGRRGGGRRPSAREVYDSKEVQKAMMRARYES 792 CLLC+RAF S D +KH S LH ENLAK G + + YRDRA+ERR YG+ D P + R+ D A P+ NVG ++++ +GW EG+GLGR G T+ + AD G + VG G + G +P D K K MM+ RYE+ Sbjct: 794 CLLCKRAFQSLDILQKHLKMSNLHKENLAKLKQNSGGGAAIDEGLSYRDRAKERRLKYGESDPPPPNRS----------------------------RERFEQEIKTLQTRQKDASGATPAMPISSSNVGSRLMQKMGWSEGQGLGRKNQGRTQIIEAD-----GRTNNVGL------GNKSGNMQPG----NDYKSYIKKMMKQRYEN 959
BLAST of NO02G05880 vs. NCBI_GenBank
Match: XP_016997773.1 (PREDICTED: RNA-binding protein 5-A isoform X3 [Drosophila takahashii]) HSP 1 Score: 77.4 bits (189), Expect = 2.200e-10 Identity = 65/209 (31.10%), Postives = 87/209 (41.63%), Query Frame = 0 Query: 586 CLLCRRAFNSWDQWRKHEAKSALHAENLAK---QLAEGVMLQQQQQYRDRAEERRQLYGQDDRPKSLKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKTDVETAGVDKPLGEGNVGHQMLRSLGWKEGEGLGRDKGGITEPVRADQALLSGSKSGVGAGGGGLEGRRGGGRRPSAREVYDSKEVQKAMMRARYES 792 CLLC+RAF S D +KH S LH ENLAK G + + YRDRA+ERR YG+ D P + R+ D A P+ NVG ++++ +GW EG+GLGR G T+ + AD G + VG G + G +P D K K MM+ RYE+ Sbjct: 500 CLLCKRAFQSLDILQKHLKMSNLHKENLAKLKQNSGGGAAIDEGLSYRDRAKERRLKYGESDPPPPNRS----------------------------RERFEQEIKTLQTRQKDASGATPAMPISSSNVGSRLMQKMGWSEGQGLGRKNQGRTQIIEAD-----GRTNNVGL------GNKSGNMQPG----NDYKSYIKKMMKQRYEN 665
BLAST of NO02G05880 vs. NCBI_GenBank
Match: OAD00962.1 (C2H2-type zinc finger transcription factor [Mucor circinelloides f. lusitanicus CBS 277.49]) HSP 1 Score: 77.0 bits (188), Expect = 2.900e-10 Identity = 74/197 (37.56%), Postives = 97/197 (49.24%), Query Frame = 0 Query: 586 CLLCRRAFNSWDQWRKHEAKSALHAENL--------AKQLAEGVMLQQQQ-------QYRDRAEERRQLYGQDDRPKSLKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKTDVETAGVDKPLGEGNVGHQMLRSLGWKEGEGLGRDKGGITEPVRADQ-----ALLSGSKSGVGAGGGGLEGR 763 CLLC+R F +H+A S LH NL AK + + QQ+ +YR+RA ERRQ YGQ D+P XXXXXXXXXXXXX R+ V A + P+ + N G +ML S+GWK+GEGLG+D GI +PV+A+ + S K VG+GGG + R Sbjct: 111 CLLCQRKFKQKSDLERHQAISELHKNNLKDPVAVNKAKLKIQFIQTDQQEKEKEQTVEYRNRAAERRQAYGQPDKP-------------------------VLSPXXXXXXXXXXXXXMIPRREQPVNQASMYTPIADDNKGARMLASMGWKKGEGLGKDGSGILDPVKAESYAQSAGIGSTPKRDVGSGGGSYQSR 282
BLAST of NO02G05880 vs. NCBI_GenBank
Match: XP_016972045.1 (PREDICTED: RNA-binding protein 5-B isoform X1 [Drosophila rhopaloa]) HSP 1 Score: 76.6 bits (187), Expect = 3.800e-10 Identity = 65/208 (31.25%), Postives = 89/208 (42.79%), Query Frame = 0 Query: 586 CLLCRRAFNSWDQWRKHEAKSALHAENLAK--QLAEGVMLQQQQQYRDRAEERRQLYGQDDRPKSLKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKTDVETAGVDKPLGEGNVGHQMLRSLGWKEGEGLGRDKGGITEPVRADQALLSGSKSGVGAGGGGLEGRRGGGRRPSAREVYDSKEVQKAMMRARYES 792 CLLC+RAF S D +KH S LH ENLAK Q ++G + + YRDRA+ERR YG+ D P + R+ D + P+ NVG ++++ +GW EG+GLGR G T+ + AD G + VG G + G P D K K MM+ RYE+ Sbjct: 816 CLLCKRAFQSLDILQKHLKMSNLHKENLAKLNQNSKGNSIDEALSYRDRAKERRLKYGESDPPPPNRS----------------------------RERFEHEIKTLQARQKDSSGSAPALPISSSNVGSRLMQKMGWSEGQGLGRKNQGRTQIIEAD-----GRTNNVGLGS------KAGNLPPG----NDYKSYIKKMMKQRYEN 980
BLAST of NO02G05880 vs. NCBI_GenBank
Match: XP_016972046.1 (PREDICTED: RNA-binding protein 5-B isoform X2 [Drosophila rhopaloa]) HSP 1 Score: 76.6 bits (187), Expect = 3.800e-10 Identity = 65/208 (31.25%), Postives = 89/208 (42.79%), Query Frame = 0 Query: 586 CLLCRRAFNSWDQWRKHEAKSALHAENLAK--QLAEGVMLQQQQQYRDRAEERRQLYGQDDRPKSLKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKTDVETAGVDKPLGEGNVGHQMLRSLGWKEGEGLGRDKGGITEPVRADQALLSGSKSGVGAGGGGLEGRRGGGRRPSAREVYDSKEVQKAMMRARYES 792 CLLC+RAF S D +KH S LH ENLAK Q ++G + + YRDRA+ERR YG+ D P + R+ D + P+ NVG ++++ +GW EG+GLGR G T+ + AD G + VG G + G P D K K MM+ RYE+ Sbjct: 793 CLLCKRAFQSLDILQKHLKMSNLHKENLAKLNQNSKGNSIDEALSYRDRAKERRLKYGESDPPPPNRS----------------------------RERFEHEIKTLQARQKDSSGSAPALPISSSNVGSRLMQKMGWSEGQGLGRKNQGRTQIIEAD-----GRTNNVGLGS------KAGNLPPG----NDYKSYIKKMMKQRYEN 957 The following BLAST results are available for this feature:
BLAST of NO02G05880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G05880 ID=NO02G05880|Name=NO02G05880|organism=Nannochloropsis oceanica|type=gene|length=2456bpback to top protein sequence of NO02G05880.1 >NO02G05880.1-protein ID=NO02G05880.1-protein|Name=NO02G05880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=798bpback to top Synonyms
Publications
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