NO02G05880.1, NO02G05880.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G05880.1
Unique Name	NO02G05880.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2394
Alignment location	chr2:1568261..1570716 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1568261..1570716 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G05880.1 vs.
Match: XP_002087519.2 (uncharacterized protein Dyak_GE17429, isoform A [Drosophila yakuba]; EDW87231.2 uncharacterized protein Dyak_GE17429, isoform A [Drosophila yakuba])

HSP 1 Score: 76.6 bits (187), Expect = 3.800e-10
Identity = 67/209 (32.06%), Postives = 96/209 (45.93%), Query Frame = 0

Query:  586 CLLCRRAFNSWDQWRKHEAKSALHAENLAKQLAEGVM---LQQQQQYRDRAEERRQLYGQDDRPKSLKEGEGRDRGRGGGRGGGRERERRRDDRDRDRDQRKEESRDAERRKTDVETAGVDKPLGEGNVGHQMLRSLGWKEGEGLGRDKGGITEPVRADQALLSGSKSGVGAGGGGLEGRRGGGRRPSAREVYDSKEVQKAMMRARYES 792
            CLLC+RAF S D  +KH   S LH ENLAK     V+   + +   YRDRA+ERR  YG+ D P                              ++ R++ ++E +  + R+ D   A    P+   NVG ++++ +GW EG+GLGR   G T+ + AD     G  + VG       G + G   P      D K   K MM+ RYE+
Sbjct:  818 CLLCKRAFQSLDILQKHLKMSNLHKENLAKLKQNSVVEAGMDEGLSYRDRAKERRLKYGESDPPPP----------------------------NKSRERFEQEIKTLQSRQKDSSGATPAMPISSSNVGSRLMQKMGWSEGQGLGRKNQGRTQIIEAD-----GRTNNVGL------GNKSGHLTPG----NDYKSYIKKMMKQRYEN 983

The following BLAST results are available for this feature:

BLAST of NO02G05880.1 vs.

BLAST of NO02G05880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_002087519.2	3.800e-10	32.06	uncharacterized protein Dyak_GE17429, isoform A [D...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G05880	NO02G05880	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G05880.1	NO02G05880.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G05880.1.cds1	NO02G05880.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G05880.1.cds2	NO02G05880.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1568261..1570716-
coding sequence from alignment at chr2:1568261..1570716-

mRNA sequence

>NO02G05880.1 ID=NO02G05880.1|Name=NO02G05880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2394bp
ATGGAGTACTGTGTGCCCCCTCCTCCTTCGGGCCCTCCCTCACGTGCTGC
CTTGCCCCTCGCGGGAGGGGGGTGGGGAGGAGGGAAGGGCGAGAAGGAGG
GAGGGAAATGGAAGAGGGAAGAGGAGAATCAGCTGCGGGCCCACAGAAAG
TCGAGGGACAAGGACTGGGTTTGTGGGAAATGCCATAAATTGAATTACGG
TCGACGGGAAGATTGTTGTCAGTGCAAGCACCCAAAGGGCACTGATGCTC
TGTACCCTCCCCATCTCTACGAGGAAGAGGGCAGGCAGGCCAGGCGGGCC
CACGCAGATGAGAGTGAGATTCCGTGTCGCACACTCATAATGAAGGGGTT
GCCGATCCACTCCAACGAGGCGTCTGTCGTGCAGGCGCTGCAGGGAGGGT
ATGGGGTATGTGTTACCGCTTGTTCTTTGGGCCGGGACAGCAGCAGAGGG
GGGGCCAGCAAAGGGACGTGTGTCGTGGAAATGAGCGACGTGGACGGGGC
ATCTTTCCTCGTCAGAGAGAGTAAGAGGGGTGTGAGTCAGGGAGGGGGGG
GGGTAGGCGTAGTCGTGGAGGGGAGGACGGTCCGGGTTGCATTTGCAACT
GATACGTTCGCTTCCTTGGCCGGAGGGTCGATGTTTCTCGTCGATGGGGC
TCAACAATTACCGCAGCTGCCCCTGCACTCATCAGCACCACTACAGCAGC
AGCAGCAGCAGCAGCCGCCGCCACCGCCGTCAGTGCACGGCATGTCATTA
CCTCTCCCCCTCCCTCCGGCATCTGGCTATCCCCCGGGCTTCCCTCCTCC
TCTTCCCCTCCCCCTTCCTCCCTCCCTCTCTGGCGCTCCTCCAGCCTCCG
TGCGACCACCAGTGACCAATAATAATGGGGCTTTAGGCCGTCCACCTCGA
CGATCGGCACCAGCAGCAGCACCAGCAGTAGCACCAGCAGTAGCACCAGC
ACCAGCAGCACCAGCAGCACCAGCAAAACAACGGCCGGAGTGGCCCCCGA
CTTTCGAGGACGGTGGAGGTGCTTACACCTACGATGTGGCAAGCGGGTTT
TTTTGGGAGGGGGGCTCGGGATTTTTCCACGACCCGGTGAGCAAACTGTA
TTACTCCGTGGGGAAACAGGCTTATTTCAGGTGGGAGGGGAGGGAGGGAG
GGAGGGAGGAAGGGGGAGGGGGAAGGGGAGGGCAGTGGGTGATGTTTGTG
CCGCCGATTCCTGGAAAGGGGGGTAGAGACAGAGAGGAACAGGGGCAGGA
GCAGCAGCCTTGTCAGGAGCTGAAACAGCGGCCGTCTCAGCGAGGAGAAA
TTGGAGTCAATTTGGAGGGAGGTAACGGGGAGATGGGAGTAAAGGGGGAG
GAGCGCAAGGAGAAAGATGTGCAGCTTCCCAGGAAGACTGTTAAGATCGC
TCTCAAGCCAAAGACGACGGCGGGTGGAGGGAGTGGATCGAGGCCCTCCG
GAGGGGCATGGATGGGTGCTGAGGACGAGGAGCAGGAGGAGCAGGAGCAG
AAGGGCGAAGGGCAGGAGGAGTTGGAGCCTCTAAGGGACGAAGAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGCAATG
GCAGTGATGGGAGAAGTGATAGTAGTAGCAGCGGCAACACCGCCAGCCGA
AGCTTCCTCCCCTCGCTCAGCAATGATGCCTTCCTCCCTGTCAGCGCCTC
GTCCACCAGCACCAGCACCAAAAGCATAGTCGGAGAAGTCAATGGCGAGC
CTGTCTGTCTGTTGTGTAGACGTGCATTCAACTCGTGGGACCAGTGGCGA
AAACACGAGGCCAAAAGCGCCCTTCACGCTGAAAATCTGGCCAAACAATT
GGCGGAAGGCGTGATGCTACAGCAGCAGCAGCAGTATCGAGATCGGGCGG
AGGAGAGGAGACAATTGTACGGACAGGACGATAGACCCAAGAGTCTAAAG
GAGGGAGAAGGACGGGATCGAGGGAGGGGAGGAGGGCGAGGAGGAGGACG
TGAGAGGGAGCGGCGGCGAGACGACCGAGACCGAGACCGAGACCAAAGGA
AGGAAGAAAGCAGGGACGCAGAGAGGAGGAAGACGGATGTGGAGACGGCA
GGGGTGGACAAACCATTGGGAGAGGGGAATGTGGGACATCAAATGCTGAG
GTCGTTAGGCTGGAAGGAGGGGGAGGGCCTGGGAAGGGATAAGGGGGGGA
TCACGGAGCCTGTACGAGCAGACCAGGCGCTCTTGTCAGGGAGCAAGAGT
GGGGTGGGTGCTGGTGGCGGAGGGCTGGAGGGGAGGAGGGGAGGGGGGAG
GAGGCCGTCGGCGAGGGAGGTGTACGATTCGAAAGAGGTGCAGAAGGCGA
TGATGCGGGCAAGGTACGAATCGGTCGGGGGAAAGGTGGAGTGA

protein sequence of NO02G05880.1

>NO02G05880.1-protein ID=NO02G05880.1-protein|Name=NO02G05880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=798bp
MEYCVPPPPSGPPSRAALPLAGGGWGGGKGEKEGGKWKREEENQLRAHRK
SRDKDWVCGKCHKLNYGRREDCCQCKHPKGTDALYPPHLYEEEGRQARRA
HADESEIPCRTLIMKGLPIHSNEASVVQALQGGYGVCVTACSLGRDSSRG
GASKGTCVVEMSDVDGASFLVRESKRGVSQGGGGVGVVVEGRTVRVAFAT
DTFASLAGGSMFLVDGAQQLPQLPLHSSAPLQQQQQQQPPPPPSVHGMSL
PLPLPPASGYPPGFPPPLPLPLPPSLSGAPPASVRPPVTNNNGALGRPPR
RSAPAAAPAVAPAVAPAPAAPAAPAKQRPEWPPTFEDGGGAYTYDVASGF
FWEGGSGFFHDPVSKLYYSVGKQAYFRWEGREGGREEGGGGRGGQWVMFV
PPIPGKGGRDREEQGQEQQPCQELKQRPSQRGEIGVNLEGGNGEMGVKGE
ERKEKDVQLPRKTVKIALKPKTTAGGGSGSRPSGGAWMGAEDEEQEEQEQ
KGEGQEELEPLRDEEQQQQQQQQQQQQQQQQGNGSDGRSDSSSSGNTASR
SFLPSLSNDAFLPVSASSTSTSTKSIVGEVNGEPVCLLCRRAFNSWDQWR
KHEAKSALHAENLAKQLAEGVMLQQQQQYRDRAEERRQLYGQDDRPKSLK
EGEGRDRGRGGGRGGGRERERRRDDRDRDRDQRKEESRDAERRKTDVETA
GVDKPLGEGNVGHQMLRSLGWKEGEGLGRDKGGITEPVRADQALLSGSKS
GVGAGGGGLEGRRGGGRRPSAREVYDSKEVQKAMMRARYESVGGKVE*

mRNA from alignment at chr2:1568261..1570716-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G05880.1 ID=NO02G05880.1|Name=NO02G05880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2456bp|location=Sequence derived from alignment at chr2:1568261..1570716- (Nannochloropsis oceanica)
ATGGAGTACTGTGTGCCCCCTCCTCCTTCGGGCCCTCCCTCACGTGCTGC
CTTGCCCCTCGCGGGAGGGGGGTGGGGAGGAGGGAAGGGCGAGAAGGAGG
GAGGGAAATGGAAGAGGGAAGAGGAGAATCAGCTGCGGGCCCACAGAAAG
TCGAGGGACAAGGACTGGGTTTGTGGGAAATGCCATAAATTGAATTACGG
TCGACGGGAAGATTGTTGTCAGTGCAAGCACCCAAAGGGCACTGATGCTC
TGTACCCTCCCCATCTCTACGAGGAAGAGGGCAGGCAGGCCAGGCGGGCC
CACGCAGATGAGAGTGAGATTCCGTGTCGCACACTCATAATGAAGGGGTT
GCCGATCCACTCCAACGAGGCGTCTGTCGTGCAGGCGCTGCAGGGAGGGT
ATGGGGTATGTGTTACCGCTTGTTCTTTGGGCCGGGACAGCAGCAGAGGG
GGGGCCAGCAAAGGGACGTGTGTCGTGGAAATGAGCGACGTGGACGGGGC
ATCTTTCCTCGTCAGAGAGAGTAAGAGGGGTGTGAGTCAGGGAGGGGGGG
GGGTAGGCGTAGTCGTGGAGGGGAGGACGGTCCGGGTTGCATTTGCAACT
GATACGTTCGCTTCCTTGGCCGGAGGGTCGATGTTTCTCGTCGATGGGGC
TCAACAATTACCGCAGCTGCCCCTGCACTCATCAGCACCACTACAGCAGC
AGCAGCAGCAGCAGCCGCCGCCACCGCCGTCAGTGCACGGCATGTCATTA
CCTCTCCCCCTCCCTCCGGCATCTGGCTATCCCCCGGGCTTCCCTCCTCC
TCTTCCCCTCCCCCTTCCTCCCTCCCTCTCTGGCGCTCCTCCAGCCTCCG
TGCGACCACCAGTGACCAATAATAATGGGGCTTTAGGCCGTCCACCTCGA
CGATCGGCACCAGCAGCAGCACCAGCAGTAGCACCAGCAGTAGCACCAGC
ACCAGCAGCACCAGCAGCACCAGCAAAACAACGGCCGGAGTGGCCCCCGA
CTTTCGAGGACGGTGGAGGTGCTTACACCTACGATGTGGCAAGCGGGTTT
TTTTGGGAGGGGGGCTCGGGATTTTTCCACGACCCGGTGAGCAAACTGTA
TTACTCCGTGGGGAAACAGGCTTATTTCAGGTGGGAGGGGAGGGAGGGAG
GGAGGGAGGAAGGGGGAGGGGGAAGGGGAGGGCAGTGGGTGATGTTTGTG
CCGCCGATTCCTGGAAAGGGGGGTAGAGACAGAGAGGAACAGGGGCAGGA
GCAGCAGCCTTGTCAGGAGCTGAAACAGCGGCCGTCTCAGCGAGGAGAAA
TTGGAGTCAATTTGGAGGGAGGTAACGGGGAGATGGGAGTAAAGGGGGAG
GAGCGCAAGGAGAAAGATGTGCAGCTTCCCAGGAAGACTGTTAAGATCGC
TCTCAAGCCAAAGACGACGGCGGGTGGAGGGAGTGGATCGAGGCCCTCCG
GAGGGGCATGGATGGGTGCTGAGGACGAGGAGCAGGAGGAGCAGGAGCAG
AAGGGCGAAGGGCAGGAGGAGTTGGAGCCTCTAAGGGACGAAGAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGCAATG
GCAGTGATGGGAGAAGTGATAGTAGTAGCAGCGGCAACACCGCCAGCCGA
AGCTTCCTCCCCTCGCTCAGCAATGATGCCTTCCTCCCTGTCAGCGCCTC
GTCCACCAGCACCAGCACCAAAAGCGTGCCTGCCCCCCCCTTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGATAGTCGGAGAAG
TCAATGGCGAGCCTGTCTGTCTGTTGTGTAGACGTGCATTCAACTCGTGG
GACCAGTGGCGAAAACACGAGGCCAAAAGCGCCCTTCACGCTGAAAATCT
GGCCAAACAATTGGCGGAAGGCGTGATGCTACAGCAGCAGCAGCAGTATC
GAGATCGGGCGGAGGAGAGGAGACAATTGTACGGACAGGACGATAGACCC
AAGAGTCTAAAGGAGGGAGAAGGACGGGATCGAGGGAGGGGAGGAGGGCG
AGGAGGAGGACGTGAGAGGGAGCGGCGGCGAGACGACCGAGACCGAGACC
GAGACCAAAGGAAGGAAGAAAGCAGGGACGCAGAGAGGAGGAAGACGGAT
GTGGAGACGGCAGGGGTGGACAAACCATTGGGAGAGGGGAATGTGGGACA
TCAAATGCTGAGGTCGTTAGGCTGGAAGGAGGGGGAGGGCCTGGGAAGGG
ATAAGGGGGGGATCACGGAGCCTGTACGAGCAGACCAGGCGCTCTTGTCA
GGGAGCAAGAGTGGGGTGGGTGCTGGTGGCGGAGGGCTGGAGGGGAGGAG
GGGAGGGGGGAGGAGGCCGTCGGCGAGGGAGGTGTACGATTCGAAAGAGG
TGCAGAAGGCGATGATGCGGGCAAGGTACGAATCGGTCGGGGGAAAGGTG
GAGTGA

Coding sequence (CDS) from alignment at chr2:1568261..1570716-

>NO02G05880.1 ID=NO02G05880.1|Name=NO02G05880.1|organism=Nannochloropsis oceanica|type=CDS|length=2394bp|location=Sequence derived from alignment at chr2:1568261..1570716- (Nannochloropsis oceanica)
ATGGAGTACTGTGTGCCCCCTCCTCCTTCGGGCCCTCCCTCACGTGCTGC
CTTGCCCCTCGCGGGAGGGGGGTGGGGAGGAGGGAAGGGCGAGAAGGAGG
GAGGGAAATGGAAGAGGGAAGAGGAGAATCAGCTGCGGGCCCACAGAAAG
TCGAGGGACAAGGACTGGGTTTGTGGGAAATGCCATAAATTGAATTACGG
TCGACGGGAAGATTGTTGTCAGTGCAAGCACCCAAAGGGCACTGATGCTC
TGTACCCTCCCCATCTCTACGAGGAAGAGGGCAGGCAGGCCAGGCGGGCC
CACGCAGATGAGAGTGAGATTCCGTGTCGCACACTCATAATGAAGGGGTT
GCCGATCCACTCCAACGAGGCGTCTGTCGTGCAGGCGCTGCAGGGAGGGT
ATGGGGTATGTGTTACCGCTTGTTCTTTGGGCCGGGACAGCAGCAGAGGG
GGGGCCAGCAAAGGGACGTGTGTCGTGGAAATGAGCGACGTGGACGGGGC
ATCTTTCCTCGTCAGAGAGAGTAAGAGGGGTGTGAGTCAGGGAGGGGGGG
GGGTAGGCGTAGTCGTGGAGGGGAGGACGGTCCGGGTTGCATTTGCAACT
GATACGTTCGCTTCCTTGGCCGGAGGGTCGATGTTTCTCGTCGATGGGGC
TCAACAATTACCGCAGCTGCCCCTGCACTCATCAGCACCACTACAGCAGC
AGCAGCAGCAGCAGCCGCCGCCACCGCCGTCAGTGCACGGCATGTCATTA
CCTCTCCCCCTCCCTCCGGCATCTGGCTATCCCCCGGGCTTCCCTCCTCC
TCTTCCCCTCCCCCTTCCTCCCTCCCTCTCTGGCGCTCCTCCAGCCTCCG
TGCGACCACCAGTGACCAATAATAATGGGGCTTTAGGCCGTCCACCTCGA
CGATCGGCACCAGCAGCAGCACCAGCAGTAGCACCAGCAGTAGCACCAGC
ACCAGCAGCACCAGCAGCACCAGCAAAACAACGGCCGGAGTGGCCCCCGA
CTTTCGAGGACGGTGGAGGTGCTTACACCTACGATGTGGCAAGCGGGTTT
TTTTGGGAGGGGGGCTCGGGATTTTTCCACGACCCGGTGAGCAAACTGTA
TTACTCCGTGGGGAAACAGGCTTATTTCAGGTGGGAGGGGAGGGAGGGAG
GGAGGGAGGAAGGGGGAGGGGGAAGGGGAGGGCAGTGGGTGATGTTTGTG
CCGCCGATTCCTGGAAAGGGGGGTAGAGACAGAGAGGAACAGGGGCAGGA
GCAGCAGCCTTGTCAGGAGCTGAAACAGCGGCCGTCTCAGCGAGGAGAAA
TTGGAGTCAATTTGGAGGGAGGTAACGGGGAGATGGGAGTAAAGGGGGAG
GAGCGCAAGGAGAAAGATGTGCAGCTTCCCAGGAAGACTGTTAAGATCGC
TCTCAAGCCAAAGACGACGGCGGGTGGAGGGAGTGGATCGAGGCCCTCCG
GAGGGGCATGGATGGGTGCTGAGGACGAGGAGCAGGAGGAGCAGGAGCAG
AAGGGCGAAGGGCAGGAGGAGTTGGAGCCTCTAAGGGACGAAGAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGCAATG
GCAGTGATGGGAGAAGTGATAGTAGTAGCAGCGGCAACACCGCCAGCCGA
AGCTTCCTCCCCTCGCTCAGCAATGATGCCTTCCTCCCTGTCAGCGCCTC
GTCCACCAGCACCAGCACCAAAAGCATAGTCGGAGAAGTCAATGGCGAGC
CTGTCTGTCTGTTGTGTAGACGTGCATTCAACTCGTGGGACCAGTGGCGA
AAACACGAGGCCAAAAGCGCCCTTCACGCTGAAAATCTGGCCAAACAATT
GGCGGAAGGCGTGATGCTACAGCAGCAGCAGCAGTATCGAGATCGGGCGG
AGGAGAGGAGACAATTGTACGGACAGGACGATAGACCCAAGAGTCTAAAG
GAGGGAGAAGGACGGGATCGAGGGAGGGGAGGAGGGCGAGGAGGAGGACG
TGAGAGGGAGCGGCGGCGAGACGACCGAGACCGAGACCGAGACCAAAGGA
AGGAAGAAAGCAGGGACGCAGAGAGGAGGAAGACGGATGTGGAGACGGCA
GGGGTGGACAAACCATTGGGAGAGGGGAATGTGGGACATCAAATGCTGAG
GTCGTTAGGCTGGAAGGAGGGGGAGGGCCTGGGAAGGGATAAGGGGGGGA
TCACGGAGCCTGTACGAGCAGACCAGGCGCTCTTGTCAGGGAGCAAGAGT
GGGGTGGGTGCTGGTGGCGGAGGGCTGGAGGGGAGGAGGGGAGGGGGGAG
GAGGCCGTCGGCGAGGGAGGTGTACGATTCGAAAGAGGTGCAGAAGGCGA
TGATGCGGGCAAGGTACGAATCGGTCGGGGGAAAGGTGGAGTGA

Synonyms

Publications