NO02G05360, NO02G05360 (gene) Nannochloropsis oceanica

Overview
NameNO02G05360
Unique NameNO02G05360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length360
Alignment locationchr2:1434827..1435186 -

Link to JBrowse

Properties
Property NameValue
DescriptionTrans--dihydrobenzene--diol dehydrogenase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1434827..1435186 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO02G05360 vs. NCBI_GenBank
Match: EWM30143.1 (trans- -dihydrobenzene- -diol dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 191.8 bits (486), Expect = 1.200e-45
Identity = 90/117 (76.92%), Postives = 102/117 (87.18%), Query Frame = 0
Query:    1 MGETPEETTIVGTEGRIKILGPAHCPTKMIVSRKNKGRGNVEDYVFEYALPAPSPAVVEAGGFNYPNSQGFMYEAAAVQRCVEGGRVECPQYSMEETLVVARIMDEVRRQIGVKSVG 118
            MGETPEETTIVGTEGRIKILGPAHCPT+M++ RK+KGR NV+ + FEY LPAP PAV   GGFNYPNSQGFMYEAAA QRCV  G  E PQY+MEETL+VA+IMDEVRRQ+GV++VG
Sbjct:  292 MGETPEETTIVGTEGRIKILGPAHCPTQMVLYRKHKGRRNVQAFDFEYPLPAPLPAVEATGGFNYPNSQGFMYEAAAAQRCVLAGLGETPQYTMEETLIVAKIMDEVRRQLGVRAVG 408          
BLAST of NO02G05360 vs. NCBI_GenBank
Match: OEU17178.1 (NAD(P)-binding protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 134.8 bits (338), Expect = 1.800e-28
Identity = 58/118 (49.15%), Postives = 87/118 (73.73%), Query Frame = 0
Query:    3 ETPEETTIVGTEGRIKILGPAHCPTKMIVSRKNKGRGNV-EDYVFEYALPAPSPAVVEAGGFNYPNSQGFMYEAAAVQRCVEGGRVECPQYSMEETLVVARIMDEVRRQIGVKSVGEE 120
            ETPEET +VG++GR+KI  P HCPT + +  K  GRGN+ +   FEY LP  +  ++++GG+ YPNS GF+YEAAAV RC+  G+ E PQ+++EET++  R+++E+R Q+GVK+  E+
Sbjct:  244 ETPEETVVVGSKGRMKIGSPGHCPTMLSIDLKADGRGNLGKTLNFEYPLPEDTKEIIDSGGYFYPNSAGFLYEAAAVARCIASGKREAPQFTLEETMLNLRVIEEIRNQLGVKAFDED 361          
BLAST of NO02G05360 vs. NCBI_GenBank
Match: CBJ27518.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 131.7 bits (330), Expect = 1.500e-27
Identity = 59/114 (51.75%), Postives = 78/114 (68.42%), Query Frame = 0
Query:    3 ETPEETTIVGTEGRIKILGPAHCPTKMIVSRKNKGRGNVEDYVFEYALPAPSPAVVEAGGFNYPNSQGFMYEAAAVQRCVEGGRVECPQYSMEETLVVARIMDEVRRQIGVKSV 117
            ETPEET I+GTEGRIK+L PAHCPT + V+ K  GRGN      ++ LP P  +V  +GGFNYPNS GF +EAAA+ +C+ GGR    QY+ +E L V  +++E R Q+ + SV
Sbjct:  241 ETPEETIIIGTEGRIKLLSPAHCPTAIEVTTKAIGRGNTTTIRHDFPLPDPPASVDASGGFNYPNSNGFQFEAAAIHKCIRGGRTSSDQYTPDEMLAVMHVLEECRTQLKIDSV 354          
BLAST of NO02G05360 vs. NCBI_GenBank
Match: XP_002177744.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC50558.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 127.1 bits (318), Expect = 3.700e-26
Identity = 58/112 (51.79%), Postives = 79/112 (70.54%), Query Frame = 0
Query:    1 MGETPEETTIVGTEGRIKILGPAHCPTKMIVSRKNKGRGNVEDYV-FEYALPAPSPAVVEAGGFNYPNSQGFMYEAAAVQRCVEGGRVECPQYSMEETLVVARIMDEVRRQI 112
            +GE+ EETT+VGT+GR+ I  P HCPTK+IVS K+ GR      + F++ LP  +  +  AGGF YPNS GF YEAAAV RC+  G+ E PQY++ ET++   I+DEVR+Q+
Sbjct:  263 LGESVEETTVVGTKGRLTIKTPGHCPTKLIVSLKSTGRAAASQTIEFDFPLPKDTDDIKTAGGFVYPNSAGFCYEAAAVARCIASGKTEAPQYTLAETMLEMEILDEVRKQL 374          
BLAST of NO02G05360 vs. NCBI_GenBank
Match: XP_009032319.1 (hypothetical protein AURANDRAFT_18834 [Aureococcus anophagefferens] >EGB12661.1 hypothetical protein AURANDRAFT_18834 [Aureococcus anophagefferens])

HSP 1 Score: 121.3 bits (303), Expect = 2.000e-24
Identity = 60/110 (54.55%), Postives = 73/110 (66.36%), Query Frame = 0
Query:    3 ETPEETTIVGTEGRIKILGPAHCPTKMIVSRKNKGRGNVEDYVFEYALPAPS-PAVVEAGG---FNYPNSQGFMYEAAAVQRCVEGGRVECPQYSMEETLVVARIMDEVR 109
            ET E TT VG +GR+ +L PAHCPTK+ +  K  GRGN      EYA PAPS P    AGG   F+YPNS GF YEAAAVQRCV  G  ECPQY+++ETL+   + D+ +
Sbjct:  320 ETAETTTYVGQKGRVVVLPPAHCPTKLRLELKAAGRGNASVSEVEYAFPAPSRPFAPVAGGDACFHYPNSHGFCYEAAAVQRCVNAGLTECPQYTLDETLLALDLADQAK 429          
BLAST of NO02G05360 vs. NCBI_GenBank
Match: XP_009522124.1 (hypothetical protein PHYSODRAFT_496155 [Phytophthora sojae] >EGZ19407.1 hypothetical protein PHYSODRAFT_496155 [Phytophthora sojae])

HSP 1 Score: 89.4 bits (220), Expect = 8.500e-15
Identity = 43/113 (38.05%), Postives = 70/113 (61.95%), Query Frame = 0
Query:    1 MGETPEETTIVGTEGRIKILGPAHCPTKMIVSRKNKGRGNVEDYVFEYALPAPSPAVVEAGGFNYPNSQGFMYEAAAVQRCVEGGRVECPQYSMEETLVVARIMDEVRRQIGV 114
            + E     TI G++GRI+I  PAH  T+++V++  +  G+ ++   ++  P PS ++  A  F YP S+  +YEA AV   +  GR++C +Y +EE+L +A IMDE+R  IGV
Sbjct:  580 LAELGNSVTITGSKGRIRIPSPAHSATEVVVTQFLED-GSHQETTTKFPWPTPSSSI--ATPFKYPGSEALVYEAEAVTEAIRDGRLQCEEYPLEESLAIAEIMDEIREAIGV 689          
BLAST of NO02G05360 vs. NCBI_GenBank
Match: XP_009826693.1 (hypothetical protein H257_04033 [Aphanomyces astaci] >ETV83263.1 hypothetical protein H257_04033 [Aphanomyces astaci])

HSP 1 Score: 89.0 bits (219), Expect = 1.100e-14
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 0
Query:    6 EETTIVGTEGRIKILGPAHCPTKMIVSRKNKGRGNVEDYVFEYALPAPSPAVVEAGGFNYPNSQGFMYEAAAVQRCVEGGR-VECPQYSMEETLVVARIMDEVRRQIGV 114
            EE TI+G++GR+ I  PAH PT++   R ++G G+ E  +FE+ALP P+   V A  FN+  S G  YEAAAV R +   R  EC +Y + E+L +A +MD +RR +GV
Sbjct:  244 EEVTILGSKGRLVIDAPAHTPTRV---RVDRGTGDAE--LFEFALPKPA---VSASAFNFGGSVGLSYEAAAVTRAILHDRATECAEYPLSESLFLAGLMDTIRRDLGV 344          
BLAST of NO02G05360 vs. NCBI_GenBank
Match: XP_009826694.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV83264.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 89.0 bits (219), Expect = 1.100e-14
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 0
Query:    6 EETTIVGTEGRIKILGPAHCPTKMIVSRKNKGRGNVEDYVFEYALPAPSPAVVEAGGFNYPNSQGFMYEAAAVQRCVEGGR-VECPQYSMEETLVVARIMDEVRRQIGV 114
            EE TI+G++GR+ I  PAH PT++   R ++G G+ E  +FE+ALP P+   V A  FN+  S G  YEAAAV R +   R  EC +Y + E+L +A +MD +RR +GV
Sbjct:  154 EEVTILGSKGRLVIDAPAHTPTRV---RVDRGTGDAE--LFEFALPKPA---VSASAFNFGGSVGLSYEAAAVTRAILHDRATECAEYPLSESLFLAGLMDTIRRDLGV 254          
BLAST of NO02G05360 vs. NCBI_GenBank
Match: XP_021938127.1 (trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-like [Zootermopsis nevadensis] >KDR09314.1 Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Zootermopsis nevadensis])

HSP 1 Score: 88.2 bits (217), Expect = 1.900e-14
Identity = 48/111 (43.24%), Postives = 66/111 (59.46%), Query Frame = 0
Query:    5 PEETTIVGTEGRIKILGPAHCPTKMIVSRKNKGRGNVEDYVFEYALP-APSPAVVEAGGFNYPNSQGFMYEAAAVQRCVEGGRVECPQYSMEETLVVARIMDEVRRQIGVK 115
            P E  IVGT+G +KIL P  CPT +    K K          E+ LP AP P       FN+ NS G  YEA  V+RC++ G +E P+ S EE+L++A++ DE+R+Q+GVK
Sbjct:  235 PNEAFIVGTKGIVKILEPFWCPTSITTPEKTK----------EFILPNAPKP-------FNFTNSAGLRYEATEVRRCLKQGLLESPKVSHEESLILAQLEDEIRKQLGVK 328          
BLAST of NO02G05360 vs. NCBI_GenBank
Match: XP_019215733.1 (PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-like [Oreochromis niloticus])

HSP 1 Score: 87.0 bits (214), Expect = 4.200e-14
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 0
Query:    5 PEETTIVGTEGRIKILGPAHCPTKMIVSRKNKGRGNVEDYVFEYALPAPSPAVVEAGGFNYPNSQGFMYEAAAVQRCVEGGRVECPQYSMEETLVVARIMDEVRRQIGV 114
            P +  I GT+G IK+LGP HCPTK++V+ K            EY LP P   +      N+ NS G  YEAA V++C+  G  E P+  + +++++  IMDE+R+Q+GV
Sbjct:  235 PNDAVIAGTKGSIKVLGPMHCPTKLVVNDKET----------EYPLPEPCLPL------NFTNSTGLRYEAAEVRQCLLKGLKESPRMPLADSVLLTEIMDEIRKQVGV 327          
The following BLAST results are available for this feature:
BLAST of NO02G05360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30143.11.200e-4576.92trans- -dihydrobenzene- -diol dehydrogenase [Nanno... [more]
OEU17178.11.800e-2849.15NAD(P)-binding protein [Fragilariopsis cylindrus C... [more]
CBJ27518.11.500e-2751.75conserved unknown protein [Ectocarpus siliculosus][more]
XP_002177744.13.700e-2651.79predicted protein, partial [Phaeodactylum tricornu... [more]
XP_009032319.12.000e-2454.55hypothetical protein AURANDRAFT_18834 [Aureococcus... [more]
XP_009522124.18.500e-1538.05hypothetical protein PHYSODRAFT_496155 [Phytophtho... [more]
XP_009826693.11.100e-1444.95hypothetical protein H257_04033 [Aphanomyces astac... [more]
XP_009826694.11.100e-1444.95hypothetical protein, variant [Aphanomyces astaci]... [more]
XP_021938127.11.900e-1443.24trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-li... [more]
XP_019215733.14.200e-1439.45PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehyd... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007215NSK007215Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05360.1NO02G05360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624696gene_1126Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100115g16gene509Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05360.1NO02G05360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05360 ID=NO02G05360|Name=NO02G05360|organism=Nannochloropsis oceanica|type=gene|length=360bp
ATGGGTGAAACCCCGGAGGAAACGACGATTGTCGGGACGGAGGGAAGGAT
CAAGATCCTCGGACCGGCGCACTGTCCGACCAAGATGATCGTGTCGAGGA
AGAACAAAGGGAGAGGCAACGTGGAAGATTACGTCTTTGAGTACGCGTTA
CCTGCACCATCGCCTGCGGTGGTGGAAGCGGGGGGATTTAATTACCCAAA
TTCACAAGGCTTTATGTATGAGGCTGCGGCCGTGCAAAGGTGTGTGGAGG
GAGGAAGGGTGGAGTGCCCGCAGTATTCCATGGAGGAGACGCTGGTGGTC
GCGAGGATCATGGATGAGGTGCGGAGGCAGATTGGTGTGAAGAGTGTGGG
GGAGGAGTAG
back to top

protein sequence of NO02G05360.1

>NO02G05360.1-protein ID=NO02G05360.1-protein|Name=NO02G05360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MGETPEETTIVGTEGRIKILGPAHCPTKMIVSRKNKGRGNVEDYVFEYAL
PAPSPAVVEAGGFNYPNSQGFMYEAAAVQRCVEGGRVECPQYSMEETLVV
ARIMDEVRRQIGVKSVGEE*
back to top
Synonyms
Publications