NO02G05360.1, NO02G05360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05360.1
Unique NameNO02G05360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length360
Alignment locationchr2:1434827..1435186 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1434827..1435186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05360.1 vs.
Match: EWM30143.1 (trans- -dihydrobenzene- -diol dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 191.8 bits (486), Expect = 1.200e-45
Identity = 90/117 (76.92%), Postives = 102/117 (87.18%), Query Frame = 0 
Query:    1 MGETPEETTIVGTEGRIKILGPAHCPTKMIVSRKNKGRGNVEDYVFEYALPAPSPAVVEAGGFNYPNSQGFMYEAAAVQRCVEGGRVECPQYSMEETLVVARIMDEVRRQIGVKSVG 118
            MGETPEETTIVGTEGRIKILGPAHCPT+M++ RK+KGR NV+ + FEY LPAP PAV   GGFNYPNSQGFMYEAAA QRCV  G  E PQY+MEETL+VA+IMDEVRRQ+GV++VG
Sbjct:  292 MGETPEETTIVGTEGRIKILGPAHCPTQMVLYRKHKGRRNVQAFDFEYPLPAPLPAVEATGGFNYPNSQGFMYEAAAAQRCVLAGLGETPQYTMEETLIVAKIMDEVRRQLGVRAVG 408
The following BLAST results are available for this feature:
BLAST of NO02G05360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30143.11.200e-4576.92trans- -dihydrobenzene- -diol dehydrogenase [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05360NO02G05360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05360.1NO02G05360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05360.1.cds1NO02G05360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05360.1 ID=NO02G05360.1|Name=NO02G05360.1|organism=Nannochloropsis oceanica|type=mRNA|length=360bp
ATGGGTGAAACCCCGGAGGAAACGACGATTGTCGGGACGGAGGGAAGGAT
CAAGATCCTCGGACCGGCGCACTGTCCGACCAAGATGATCGTGTCGAGGA
AGAACAAAGGGAGAGGCAACGTGGAAGATTACGTCTTTGAGTACGCGTTA
CCTGCACCATCGCCTGCGGTGGTGGAAGCGGGGGGATTTAATTACCCAAA
TTCACAAGGCTTTATGTATGAGGCTGCGGCCGTGCAAAGGTGTGTGGAGG
GAGGAAGGGTGGAGTGCCCGCAGTATTCCATGGAGGAGACGCTGGTGGTC
GCGAGGATCATGGATGAGGTGCGGAGGCAGATTGGTGTGAAGAGTGTGGG
GGAGGAGTAG
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protein sequence of NO02G05360.1

>NO02G05360.1-protein ID=NO02G05360.1-protein|Name=NO02G05360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MGETPEETTIVGTEGRIKILGPAHCPTKMIVSRKNKGRGNVEDYVFEYAL
PAPSPAVVEAGGFNYPNSQGFMYEAAAVQRCVEGGRVECPQYSMEETLVV
ARIMDEVRRQIGVKSVGEE*
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mRNA from alignment at chr2:1434827..1435186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05360.1 ID=NO02G05360.1|Name=NO02G05360.1|organism=Nannochloropsis oceanica|type=mRNA|length=360bp|location=Sequence derived from alignment at chr2:1434827..1435186- (Nannochloropsis oceanica)
ATGGGTGAAACCCCGGAGGAAACGACGATTGTCGGGACGGAGGGAAGGAT
CAAGATCCTCGGACCGGCGCACTGTCCGACCAAGATGATCGTGTCGAGGA
AGAACAAAGGGAGAGGCAACGTGGAAGATTACGTCTTTGAGTACGCGTTA
CCTGCACCATCGCCTGCGGTGGTGGAAGCGGGGGGATTTAATTACCCAAA
TTCACAAGGCTTTATGTATGAGGCTGCGGCCGTGCAAAGGTGTGTGGAGG
GAGGAAGGGTGGAGTGCCCGCAGTATTCCATGGAGGAGACGCTGGTGGTC
GCGAGGATCATGGATGAGGTGCGGAGGCAGATTGGTGTGAAGAGTGTGGG
GGAGGAGTAG
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Coding sequence (CDS) from alignment at chr2:1434827..1435186-

>NO02G05360.1 ID=NO02G05360.1|Name=NO02G05360.1|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at chr2:1434827..1435186- (Nannochloropsis oceanica)
ATGGGTGAAACCCCGGAGGAAACGACGATTGTCGGGACGGAGGGAAGGAT
CAAGATCCTCGGACCGGCGCACTGTCCGACCAAGATGATCGTGTCGAGGA
AGAACAAAGGGAGAGGCAACGTGGAAGATTACGTCTTTGAGTACGCGTTA
CCTGCACCATCGCCTGCGGTGGTGGAAGCGGGGGGATTTAATTACCCAAA
TTCACAAGGCTTTATGTATGAGGCTGCGGCCGTGCAAAGGTGTGTGGAGG
GAGGAAGGGTGGAGTGCCCGCAGTATTCCATGGAGGAGACGCTGGTGGTC
GCGAGGATCATGGATGAGGTGCGGAGGCAGATTGGTGTGAAGAGTGTGGG
GGAGGAGTAG
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Synonyms
Publications