NO02G05340, NO02G05340 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G05340 vs. NCBI_GenBank
Match: EWM30146.1 (hypothetical protein Naga_100115g18 [Nannochloropsis gaditana]) HSP 1 Score: 267.7 bits (683), Expect = 7.100e-68 Identity = 136/209 (65.07%), Postives = 158/209 (75.60%), Query Frame = 0 Query: 1 MGGYSSKSANRGGCCNPRERAFLLVCWDAAFLNRMMRTPNATAADLEEGPSSTASPADMSQIFAVAPPPVVDARRLLSLVEGSHNTQPPPTSRFPSGTPFSRWVRARLVLFTPDLSASLAQLHQNTRLWHIFRRRLYVPILGPRELQAQFVNGALHRFQRRSRRRGPGVIVLVAGDGSLEAIPSFAASLRAMLRWGHRLEIWSWDGMVP 210 MGG+ SK A G CCN RERAF+LV WDAAFL RMMR+ + + E + D+SQIFAVAPPPVVDARRLL+LVE Q T + TP RWVRARLVLF P+++ SLAQL QNTRLW IFRRR Y P+LGPR+LQAQ V AL+RFQR ++R GPGVIV+VAGDG+LEA+PSFA SLRAMLRWGHRLE+WSW+G VP Sbjct: 1 MGGHPSKPARHGRCCNSRERAFMLVSWDAAFLTRMMRSATSLEDNGRE-VDAAQRVMDLSQIFAVAPPPVVDARRLLTLVEQGVQNQSATTLN-NTTTPVFRWVRARLVLFAPEVTPSLAQLQQNTRLWRIFRRRRYFPVLGPRDLQAQVVAQALNRFQRHAKRHGPGVIVIVAGDGALEAVPSFATSLRAMLRWGHRLEVWSWEGAVP 207
BLAST of NO02G05340 vs. NCBI_GenBank
Match: EWM30154.1 (u-box domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 115.5 bits (288), Expect = 4.500e-22 Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 0 Query: 389 PEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALREMIGLWR 455 PEPF+DPL+MEVM DP LTPSGYSYERAVI+EQIRRR +DPMTQ+PL E DLRPNRALREMI +WR Sbjct: 70 PEPFVDPLSMEVMRDPVLTPSGYSYERAVILEQIRRRALDPMTQEPLQETDLRPNRALREMIEIWR 135
BLAST of NO02G05340 vs. NCBI_GenBank
Match: OCL13634.1 (U-box-domain-containing protein [Glonium stellatum]) HSP 1 Score: 72.0 bits (175), Expect = 5.700e-9 Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 0 Query: 387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449 D P+ +DP+T E+M DP +T G+SYERA ++E ++R DP+T++ L EDLRPN ALRE Sbjct: 211 DVPDYLVDPITFEIMHDPVVTKHGHSYERATLIEHLKRSPTDPLTRELLRIEDLRPNIALRE 272
BLAST of NO02G05340 vs. NCBI_GenBank
Match: EOD43493.1 (putative u-box domain-containing protein [Neofusicoccum parvum UCRNP2]) HSP 1 Score: 71.6 bits (174), Expect = 7.500e-9 Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 0 Query: 384 EDDDAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449 E + P+ +D ++ E+M DP +T +G+SYERA ++E ++R +DP+T++PL EDLRPN ALRE Sbjct: 206 EKREVPDHLIDNISFEIMHDPVITKNGHSYERATLIEHLKRSPMDPLTREPLKIEDLRPNIALRE 270
BLAST of NO02G05340 vs. NCBI_GenBank
Match: XP_008082441.1 (RING/U-box [Glarea lozoyensis ATCC 20868] >EPE31030.1 RING/U-box [Glarea lozoyensis ATCC 20868]) HSP 1 Score: 71.2 bits (173), Expect = 9.700e-9 Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 0 Query: 389 PEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALR 448 P+ F+D +T VMVDP +T +G SYERA I+E ++R DP+T++PL EDLRPN ALR Sbjct: 212 PDYFVDDITFAVMVDPVVTKTGNSYERASIMEHLKRSHTDPLTREPLTMEDLRPNLALR 270
BLAST of NO02G05340 vs. NCBI_GenBank
Match: XP_020125139.1 (u-box domain-containing protein [Diplodia corticola] >OJD28879.1 u-box domain-containing protein [Diplodia corticola]) HSP 1 Score: 71.2 bits (173), Expect = 9.700e-9 Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 0 Query: 387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449 + P+ +D ++ E+M DP +T +G+SYERA ++E ++R DP+T++PL EDLRPN ALRE Sbjct: 209 EVPDHLIDNISFEIMHDPVITKNGHSYERATLIEHLKRSPTDPLTREPLKIEDLRPNIALRE 270
BLAST of NO02G05340 vs. NCBI_GenBank
Match: XP_002508478.1 (predicted protein [Micromonas commoda] >ACO69736.1 predicted protein [Micromonas commoda]) HSP 1 Score: 70.9 bits (172), Expect = 1.300e-8 Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 0 Query: 383 DEDDDAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRG-VDPMTQQPLAEEDLRPNRALREMIGLW 454 D D+ P+ F LT EV DP + PSG+SYER ++E +R+ G DP+T++PL E DLRPN +LR W Sbjct: 186 DRSDEPPDCFCCKLTFEVFRDPVVAPSGHSYERVAVMEHLRKVGKFDPVTREPLVESDLRPNHSLRNAAHEW 257
BLAST of NO02G05340 vs. NCBI_GenBank
Match: OCK91728.1 (U-box-domain-containing protein [Cenococcum geophilum 1.58]) HSP 1 Score: 70.9 bits (172), Expect = 1.300e-8 Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 0 Query: 387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449 + P+ +DP+T E+M DP +T G+SYERA ++E ++R DP+T++ L EDLRPN ALRE Sbjct: 211 EVPDYLIDPITFEIMHDPVVTKHGHSYERATLIEHLKRSPTDPLTRELLRIEDLRPNIALRE 272
BLAST of NO02G05340 vs. NCBI_GenBank
Match: EPS44869.1 (hypothetical protein H072_1139 [Dactylellina haptotyla CBS 200.50]) HSP 1 Score: 70.5 bits (171), Expect = 1.700e-8 Identity = 27/63 (42.86%), Postives = 48/63 (76.19%), Query Frame = 0 Query: 387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALREM 450 + P+ +D ++ +M DP +T +G+SY+R+VI++ +RR DP+T++PL +EDLRPN AL+++ Sbjct: 212 EVPDYLIDSISFSIMTDPVVTKNGHSYDRSVIMDHLRRSNTDPLTREPLRQEDLRPNLALKQV 274
BLAST of NO02G05340 vs. NCBI_GenBank
Match: KKY16170.1 (putative u-box domain containing protein [Diplodia seriata] >OMP89005.1 STIP1 homology and U box-containing protein 1 [Diplodia seriata]) HSP 1 Score: 70.1 bits (170), Expect = 2.200e-8 Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 0 Query: 387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449 + P+ +D ++ E+M DP +T +G+SYERA ++E ++R DP+T++PL +DLRPN ALRE Sbjct: 209 EVPDHLIDNISFEIMHDPVITKNGHSYERATLIEHLKRSPTDPLTREPLKIDDLRPNIALRE 270 The following BLAST results are available for this feature:
BLAST of NO02G05340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G05340 ID=NO02G05340|Name=NO02G05340|organism=Nannochloropsis oceanica|type=gene|length=1467bpback to top protein sequence of NO02G05340.1 >NO02G05340.1-protein ID=NO02G05340.1-protein|Name=NO02G05340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=489bpback to top Synonyms
Publications
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