NO02G05340.1, NO02G05340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05340.1
Unique NameNO02G05340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1467
Alignment locationchr2:1430059..1431525 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1430059..1431525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05340.1 vs.
Match: EWM30146.1 (hypothetical protein Naga_100115g18 [Nannochloropsis gaditana])

HSP 1 Score: 267.7 bits (683), Expect = 7.100e-68
Identity = 136/209 (65.07%), Postives = 158/209 (75.60%), Query Frame = 0 
Query:    1 MGGYSSKSANRGGCCNPRERAFLLVCWDAAFLNRMMRTPNATAADLEEGPSSTASPADMSQIFAVAPPPVVDARRLLSLVEGSHNTQPPPTSRFPSGTPFSRWVRARLVLFTPDLSASLAQLHQNTRLWHIFRRRLYVPILGPRELQAQFVNGALHRFQRRSRRRGPGVIVLVAGDGSLEAIPSFAASLRAMLRWGHRLEIWSWDGMVP 210
            MGG+ SK A  G CCN RERAF+LV WDAAFL RMMR+  +   +  E   +     D+SQIFAVAPPPVVDARRLL+LVE     Q   T    + TP  RWVRARLVLF P+++ SLAQL QNTRLW IFRRR Y P+LGPR+LQAQ V  AL+RFQR ++R GPGVIV+VAGDG+LEA+PSFA SLRAMLRWGHRLE+WSW+G VP
Sbjct:    1 MGGHPSKPARHGRCCNSRERAFMLVSWDAAFLTRMMRSATSLEDNGRE-VDAAQRVMDLSQIFAVAPPPVVDARRLLTLVEQGVQNQSATTLNNTT-TPVFRWVRARLVLFAPEVTPSLAQLQQNTRLWRIFRRRRYFPVLGPRDLQAQVVAQALNRFQRHAKRHGPGVIVIVAGDGALEAVPSFATSLRAMLRWGHRLEVWSWEGAVP 207
The following BLAST results are available for this feature:
BLAST of NO02G05340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30146.17.100e-6865.07hypothetical protein Naga_100115g18 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05340NO02G05340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05340.1NO02G05340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05340.1.cds1NO02G05340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05340.1 ID=NO02G05340.1|Name=NO02G05340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1467bp
ATGGGTGGGTACTCCTCCAAGTCGGCTAATCGTGGTGGATGCTGCAATCC
TCGCGAGCGCGCTTTCCTTCTCGTGTGTTGGGATGCCGCATTTTTGAATC
GCATGATGCGAACGCCAAATGCCACCGCTGCCGACCTCGAGGAAGGCCCA
AGCAGCACTGCTAGTCCTGCGGACATGAGCCAAATTTTCGCCGTGGCTCC
GCCACCGGTCGTGGACGCTCGCCGTCTCCTAAGCTTAGTCGAAGGTAGCC
ACAACACCCAGCCACCCCCTACCTCTCGCTTCCCATCCGGCACACCCTTT
TCCCGATGGGTGCGCGCCCGCCTCGTCCTCTTTACCCCTGATCTCTCTGC
TTCTCTTGCGCAGCTCCACCAAAACACACGCTTGTGGCACATTTTCCGTC
GTCGACTCTATGTCCCCATTCTGGGCCCACGAGAATTACAAGCTCAGTTT
GTAAATGGTGCTCTGCACCGGTTCCAACGTCGCTCCCGTCGGCGTGGGCC
AGGCGTCATAGTCCTCGTCGCCGGAGACGGCAGCCTGGAAGCCATCCCTA
GTTTTGCTGCCTCTCTGCGGGCAATGCTTCGATGGGGACACAGGTTGGAG
ATCTGGTCTTGGGATGGAATGGTTCCATCGCTGTACAAGGAGCTAGCGAG
TGAAGTGGCGGAAGGGAAGGTGCAAGTGAGGTACCTGAACGACCATCGAC
CGGCCATTCGCTATCAGACAGGAGGGCGAGGAAGCACTGGTGCTGGTATT
GGTGCTGGTATTGGTCTTGATGCTGCAGCTGAAGGCGGTGGAGGGTCTTC
CTTACTGACGCCGCCATCGAATGCTGCCGCGTTGCCGGTAGCGATGCCCA
TGGCCGTTCCTGTTGAGGGAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGA
GAAGAAGAAGAAGAGGGAGGCACATTTGCTGTTGCTCGCCCTCACAATAC
GGCGCAATTCCCTCTGGAGAAAGACGACGGTGGTGGGGCGGATCAAGCTG
CAGCTGCTATGGCGGGGTTAGAGATAGGGGAGGACGGGGACGTGGTGGAA
AGGGAGGGAGGTGTGGAGGGCGTAGAGGAAGACGATTCAAGCAGTGATGA
TGAGACGGGCCAGCGGCAGCAAACGGGCAACGCTGCTGATGCCTACGATG
AGGATGACGATGCTCCTGAGCCTTTCTTGGATCCGTTGACCATGGAAGTG
ATGGTAGACCCGGCATTAACGCCATCGGGGTACTCGTATGAGAGGGCGGT
GATTGTCGAGCAGATCCGACGGAGGGGTGTGGATCCCATGACACAGCAGC
CGTTGGCGGAGGAGGATTTGAGGCCGAACAGGGCGTTGAGAGAGATGATC
GGATTGTGGAGATTGCGACAGAGGCAGCAGCAGGAGCAGCAGTCGCATGC
GGGGAGGCAAGCGCGGGAGTTCGAGGGGGAGGGAGGGGGAGAGGGGGAGA
GTGAAGGTCGAGGGTGA
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protein sequence of NO02G05340.1

>NO02G05340.1-protein ID=NO02G05340.1-protein|Name=NO02G05340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MGGYSSKSANRGGCCNPRERAFLLVCWDAAFLNRMMRTPNATAADLEEGP
SSTASPADMSQIFAVAPPPVVDARRLLSLVEGSHNTQPPPTSRFPSGTPF
SRWVRARLVLFTPDLSASLAQLHQNTRLWHIFRRRLYVPILGPRELQAQF
VNGALHRFQRRSRRRGPGVIVLVAGDGSLEAIPSFAASLRAMLRWGHRLE
IWSWDGMVPSLYKELASEVAEGKVQVRYLNDHRPAIRYQTGGRGSTGAGI
GAGIGLDAAAEGGGGSSLLTPPSNAAALPVAMPMAVPVEGGRGGGGGGGG
EEEEEGGTFAVARPHNTAQFPLEKDDGGGADQAAAAMAGLEIGEDGDVVE
REGGVEGVEEDDSSSDDETGQRQQTGNAADAYDEDDDAPEPFLDPLTMEV
MVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALREMI
GLWRLRQRQQQEQQSHAGRQAREFEGEGGGEGESEGRG*
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mRNA from alignment at chr2:1430059..1431525-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05340.1 ID=NO02G05340.1|Name=NO02G05340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1467bp|location=Sequence derived from alignment at chr2:1430059..1431525- (Nannochloropsis oceanica)
ATGGGTGGGTACTCCTCCAAGTCGGCTAATCGTGGTGGATGCTGCAATCC
TCGCGAGCGCGCTTTCCTTCTCGTGTGTTGGGATGCCGCATTTTTGAATC
GCATGATGCGAACGCCAAATGCCACCGCTGCCGACCTCGAGGAAGGCCCA
AGCAGCACTGCTAGTCCTGCGGACATGAGCCAAATTTTCGCCGTGGCTCC
GCCACCGGTCGTGGACGCTCGCCGTCTCCTAAGCTTAGTCGAAGGTAGCC
ACAACACCCAGCCACCCCCTACCTCTCGCTTCCCATCCGGCACACCCTTT
TCCCGATGGGTGCGCGCCCGCCTCGTCCTCTTTACCCCTGATCTCTCTGC
TTCTCTTGCGCAGCTCCACCAAAACACACGCTTGTGGCACATTTTCCGTC
GTCGACTCTATGTCCCCATTCTGGGCCCACGAGAATTACAAGCTCAGTTT
GTAAATGGTGCTCTGCACCGGTTCCAACGTCGCTCCCGTCGGCGTGGGCC
AGGCGTCATAGTCCTCGTCGCCGGAGACGGCAGCCTGGAAGCCATCCCTA
GTTTTGCTGCCTCTCTGCGGGCAATGCTTCGATGGGGACACAGGTTGGAG
ATCTGGTCTTGGGATGGAATGGTTCCATCGCTGTACAAGGAGCTAGCGAG
TGAAGTGGCGGAAGGGAAGGTGCAAGTGAGGTACCTGAACGACCATCGAC
CGGCCATTCGCTATCAGACAGGAGGGCGAGGAAGCACTGGTGCTGGTATT
GGTGCTGGTATTGGTCTTGATGCTGCAGCTGAAGGCGGTGGAGGGTCTTC
CTTACTGACGCCGCCATCGAATGCTGCCGCGTTGCCGGTAGCGATGCCCA
TGGCCGTTCCTGTTGAGGGAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGA
GAAGAAGAAGAAGAGGGAGGCACATTTGCTGTTGCTCGCCCTCACAATAC
GGCGCAATTCCCTCTGGAGAAAGACGACGGTGGTGGGGCGGATCAAGCTG
CAGCTGCTATGGCGGGGTTAGAGATAGGGGAGGACGGGGACGTGGTGGAA
AGGGAGGGAGGTGTGGAGGGCGTAGAGGAAGACGATTCAAGCAGTGATGA
TGAGACGGGCCAGCGGCAGCAAACGGGCAACGCTGCTGATGCCTACGATG
AGGATGACGATGCTCCTGAGCCTTTCTTGGATCCGTTGACCATGGAAGTG
ATGGTAGACCCGGCATTAACGCCATCGGGGTACTCGTATGAGAGGGCGGT
GATTGTCGAGCAGATCCGACGGAGGGGTGTGGATCCCATGACACAGCAGC
CGTTGGCGGAGGAGGATTTGAGGCCGAACAGGGCGTTGAGAGAGATGATC
GGATTGTGGAGATTGCGACAGAGGCAGCAGCAGGAGCAGCAGTCGCATGC
GGGGAGGCAAGCGCGGGAGTTCGAGGGGGAGGGAGGGGGAGAGGGGGAGA
GTGAAGGTCGAGGGTGA
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Coding sequence (CDS) from alignment at chr2:1430059..1431525-

>NO02G05340.1 ID=NO02G05340.1|Name=NO02G05340.1|organism=Nannochloropsis oceanica|type=CDS|length=1467bp|location=Sequence derived from alignment at chr2:1430059..1431525- (Nannochloropsis oceanica)
ATGGGTGGGTACTCCTCCAAGTCGGCTAATCGTGGTGGATGCTGCAATCC
TCGCGAGCGCGCTTTCCTTCTCGTGTGTTGGGATGCCGCATTTTTGAATC
GCATGATGCGAACGCCAAATGCCACCGCTGCCGACCTCGAGGAAGGCCCA
AGCAGCACTGCTAGTCCTGCGGACATGAGCCAAATTTTCGCCGTGGCTCC
GCCACCGGTCGTGGACGCTCGCCGTCTCCTAAGCTTAGTCGAAGGTAGCC
ACAACACCCAGCCACCCCCTACCTCTCGCTTCCCATCCGGCACACCCTTT
TCCCGATGGGTGCGCGCCCGCCTCGTCCTCTTTACCCCTGATCTCTCTGC
TTCTCTTGCGCAGCTCCACCAAAACACACGCTTGTGGCACATTTTCCGTC
GTCGACTCTATGTCCCCATTCTGGGCCCACGAGAATTACAAGCTCAGTTT
GTAAATGGTGCTCTGCACCGGTTCCAACGTCGCTCCCGTCGGCGTGGGCC
AGGCGTCATAGTCCTCGTCGCCGGAGACGGCAGCCTGGAAGCCATCCCTA
GTTTTGCTGCCTCTCTGCGGGCAATGCTTCGATGGGGACACAGGTTGGAG
ATCTGGTCTTGGGATGGAATGGTTCCATCGCTGTACAAGGAGCTAGCGAG
TGAAGTGGCGGAAGGGAAGGTGCAAGTGAGGTACCTGAACGACCATCGAC
CGGCCATTCGCTATCAGACAGGAGGGCGAGGAAGCACTGGTGCTGGTATT
GGTGCTGGTATTGGTCTTGATGCTGCAGCTGAAGGCGGTGGAGGGTCTTC
CTTACTGACGCCGCCATCGAATGCTGCCGCGTTGCCGGTAGCGATGCCCA
TGGCCGTTCCTGTTGAGGGAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGA
GAAGAAGAAGAAGAGGGAGGCACATTTGCTGTTGCTCGCCCTCACAATAC
GGCGCAATTCCCTCTGGAGAAAGACGACGGTGGTGGGGCGGATCAAGCTG
CAGCTGCTATGGCGGGGTTAGAGATAGGGGAGGACGGGGACGTGGTGGAA
AGGGAGGGAGGTGTGGAGGGCGTAGAGGAAGACGATTCAAGCAGTGATGA
TGAGACGGGCCAGCGGCAGCAAACGGGCAACGCTGCTGATGCCTACGATG
AGGATGACGATGCTCCTGAGCCTTTCTTGGATCCGTTGACCATGGAAGTG
ATGGTAGACCCGGCATTAACGCCATCGGGGTACTCGTATGAGAGGGCGGT
GATTGTCGAGCAGATCCGACGGAGGGGTGTGGATCCCATGACACAGCAGC
CGTTGGCGGAGGAGGATTTGAGGCCGAACAGGGCGTTGAGAGAGATGATC
GGATTGTGGAGATTGCGACAGAGGCAGCAGCAGGAGCAGCAGTCGCATGC
GGGGAGGCAAGCGCGGGAGTTCGAGGGGGAGGGAGGGGGAGAGGGGGAGA
GTGAAGGTCGAGGGTGA
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Synonyms
Publications