NO02G04540, NO02G04540 (gene) Nannochloropsis oceanica

Overview
NameNO02G04540
Unique NameNO02G04540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2608
Alignment locationchr2:1227949..1230556 +

Link to JBrowse

Properties
Property NameValue
DescriptionRAP domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1227949..1230556 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013584RAP
Homology
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BLAST of NO02G04540 vs. NCBI_GenBank
Match: EWM30309.1 (RAP domain protein [Nannochloropsis gaditana])

HSP 1 Score: 518.1 bits (1333), Expect = 3.500e-143
Identity = 303/561 (54.01%), Postives = 356/561 (63.46%), Query Frame = 0 
Query:   25 LAIVVMLLVAPRSGASSFLSRDLSFVPPPPLQLPSPSNGRVGITSLLYARRQIPRISDNSRSGYDSGLTPSSSRPGSPGSKTTS-FSPAQAPAATAAASHTITSLIGRSDKVEVLRAIEGLPPQFLTGATVTAAWDRLAQRTVSSGPRAPHLPPLHTDRAFLLLLERTRELLLDLSPGHCASIVGNLAKLRYRPDDSFLTTLLSSCRAREERQTFGQAARLASGLARLDYILENDELERLARIMDERMKVMDLDSLHPESLSLGLWSLAVLGKLSEPGMEGLRDGLVKAAIVRLDAVHMEATAVGLGQGPVLSEGKAKNLVRICRQLRIALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT---------------ELLRLRINQIWLDLGAWLDPVRPSRLQTDVETTLRSNGAFFTREWEDGVVTVDIALHPLPV-----PEGSEGEKKEGTVRQPVALEVDGPSHFFVNHPQRPTGDTKIKHQALRLSQQWSAIISLPHFEWPRARMGGKQKKPRQQQLACLRRKVAQTGLEPGDF 565
            + +++  L+   S AS   SR   F+        + S+ +   TS L+ R++  R   +     D GL   SS       KTT+ FS + A  A+A A+ TITSLIGRSDKVEVLR IE LP   L G TV AAWDRLAQRTV +GPRAPHLPPLH DRAF +LLERTR LL DLSPGHCA++VGNLAKLRYRPDDSFL+ LL SCR+R E QTFGQAA L SGLARLDY  + DEL RLA +M+ER+  M+ D+LHPESLS+GLW+LAVLG L +P  E LR  LV+AAI RL + H EATA G GQGPVLSEGKAKNLVRICR LR ALL                                                                    LRL ++Q+WLDLGAW+DPVR SRLQ +VE+TLR  GA+ T EWED VVTVD+ALHP P+      EG+  +++ G   +PVALEVDGPSHFFVN PQRPTGDTKIKHQAL L  QWSA+ISL HFEWP         K  +QQLA L++K+AQTGLEP DF
Sbjct:   29 VGLILASLLPVYSCASPHRSRGFLFITTSTASATASSSYKF-YTSQLFGRKKAGRTKGDCA---DDGLPGGSSL-----EKTTAPFSLSDAHVASATATSTITSLIGRSDKVEVLRTIESLPSICLDGVTVAAAWDRLAQRTVPAGPRAPHLPPLHNDRAFHMLLERTRALLPDLSPGHCAAVVGNLAKLRYRPDDSFLSALLFSCRSRAEAQTFGQAAHLISGLARLDYDFKEDELGRLACLMEERLLTMEKDTLHPESLSMGLWALAVLGPLGDPSREKLRHWLVEAAIDRLASAHAEATAAGFGQGPVLSEGKAKNLVRICRLLRTALLFLSDPEVGQSGKKASGTSGGWEGKEVGEGRRAAKTPSLASVSRPAPALSPCYPLAVSNDDLNLSAFAKLRLCVDQVWLDLGAWVDPVRSSRLQMEVESTLRYGGAYCTGEWEDEVVTVDVALHPRPMSGSEDAEGAREDRRGGRRVRPVALEVDGPSHFFVNQPQRPTGDTKIKHQALHLGGQWSAVISLAHFEWP---------KSSKQQLAVLKKKIAQTGLEPKDF 571
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BLAST of NO02G04540 vs. NCBI_GenBank
Match: EWM29914.1 (hypothetical protein Naga_100035g39 [Nannochloropsis gaditana])

HSP 1 Score: 70.9 bits (172), Expect = 1.500e-8
Identity = 55/177 (31.07%), Postives = 79/177 (44.63%), Query Frame = 0 
Query:  417 WLDLGAWLDPVRPSRLQTDVETTLRSNGAFFTREWE--DGVVTVDIALHP------------LPVPEGSEGEKKEGTVRQPVALEVDGPSHFFVNHPQRPTGDTKIKHQAL-------------RLSQQWSAIISLPHFEWPRARMGGKQKKPR-QQQLACLRRKVAQTGLEPGDFL 566
            W  +    +P  PS L   V  TL   G  +  E +  +G  ++D+ L P              V +G E       V  PV +EVDGPSH+ VN P   TGDT  K + L               SQ+W+A++SL  +EW       ++  PR Q ++A LRRK+   GL   D++
Sbjct: 1187 WGHVAHLREPPVPSALHQQVMGTLTLAGVSYRAEEKVCEGTFSLDLVLFPRGNCRNCSSDRNKSVLDGEEA-SHSSRVALPVVVEVDGPSHYMVNMPDMLTGDTMFKRRMLLGQRSLRKDEGAHAPSQRWAAVLSLLLWEW-------EEVGPRYQNKIALLRRKLKAEGLRLEDYI 1355
The following BLAST results are available for this feature:
BLAST of NO02G04540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM30309.13.500e-14354.01RAP domain protein [Nannochloropsis gaditana][more]
EWM29914.11.500e-831.07hypothetical protein Naga_100035g39 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007125NSK007125Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04540.1NO02G04540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|149351gene_1047Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g19gene444Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04540.1NO02G04540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04540 ID=NO02G04540|Name=NO02G04540|organism=Nannochloropsis oceanica|type=gene|length=2608bp
CGTTGGGTCGAATGGTGGTGGGGCATGCGGTCCGAGCCCCAGCCCATGCC
CTCAGCCAGTTACATATCAGACTCCAACACACACACCATATCACAACCTA
TGGACACAAAAAATCAACTCTAGTAGTTACCAGGCGACGAATCGCAAGCT
ACATGCCGCTCCATCGTTAACAAGCGCTGCAAGCACCTGGAGCAAGTTGG
AGAGCAAGAGCGAGAATTACACTATCACGATGCGTACACTTTGCTGTCTC
CATCCAAGACCCACGAGAAGTGCCTTGGCCATGAAGCATGTTGTGTCAGT
CCTTGCCATCGTCGTTATGCTGCTGGTGGCCCCGAGAAGTGGCGCATCCT
CATTTCTGTCAAGAGgtaagaggcagtcgaggcagagtaccccccttata
ctggttgaaccgcaccactaataccgcagctgacaaccatagcgtgctcg
tttctcttacgtcaaacgcgcattgacagaaaagacaataggaacattct
ttgtctctcgccgtctctcacctcctcccaacttccaccccatttcagAT
CTCTCTTTCGTCCCGCCACCACCGCTACAACTCCCGTCACCCTCCAACGG
CCGTGTGGGCATCACCAGCCTTCTCTATGCGCGACGACAAATTCCACGAA
TCAGTGACAACAGCAGAAGTGGCTATGACTCCGGCCTGACACCAAGTAGC
AGTCGCCCCGGCAGCCCGGGAAGTAAAACGACCTCTTTCTCTCCTGCCCA
AGCGCCCGCCGCAACAGCCGCCGCATCCCACACCATCACCAGCCTGATCG
GGCGAAGCGACAAAGTAGAAGTCCTTCGAGCGATTGAAGGCCTCCCTCCT
CAATTTTTAACCGGGGCCACCGTCACTGCTGCATGGGACCGCCTTGCCCA
ACGTACTGTTTCGTCTGGCCCCCGCGCCCCTCACCTTCCCCCTTTGCACA
CAGACCGTGCCTTCCTCCTCCTCCTTGAACGGACCCGCGAATTACTGCTT
GATCTCTCCCCAGGGCATTGCGCTTCTATCGTTGGTAATCTTGCGAAGCT
CCGTTATCGTCCTGATGATTCATTTCTCACCACGTTGCTCTCCTCTTGCC
GTGCGCGGGAGGAGCGGCAAACCTTTGGCCAAGCGGCGCGGTTGGCGTCA
GGATTGGCGAGGTTGGATTATATTTTGGAGAACGATGAGCTGGAGAGATT
GGCAAGGATTATGGATGAAAGAATGAAGGTAATGGATTTGGATAGCTTGC
ATCCGGAGAGTCTGTCGCTGGGGTTGTGGTCTTTGGCCGTGTTGGGTAAG
CTGTCGGAGCCGGGGATGGAGGGGTTGAGGGACGGCTTGGTGAAGGCGGC
GATTGTGCGGTTGGATGCTGTGCATATGGAGGCGACGGCGGTGGGACTTG
GGCAGGGGCCAGTTTTGTCGGAGGGAAAGGCTAAGAATTTGGTGCGGATT
TGCAGACAGTTGAGGATAGCGTTGCTGTTTTTGCCGCCTCCTGCTGCTAC
TGCTGCTGCTTCTGCGGGTGTGCCTGCAGCGTCACGTTGTTCACTCTATT
CTGGCTCAGCTGGCAGCAGCAGCAGCACCACCACCACCACCACCCTCTCT
TCCCTCCCTTCATCCTCCTTATCCTCTACCGAGCTCCTTCGACTTCGGAT
CAACCAAATCTGGCTCGATCTCGGCGCTTGGCTTGACCCTGTCCGTCCTT
CCCGTCTTCAAACGGACGTTGAAACGACCCTCCGCTCCAACGGTGCCTTC
TTTACGAGGGAATGGGAGGACGGCGTGGTCACTGTAGATATCGCCTTGCA
CCCACTACCGGTTCCCGAAGGGAGCGAGGGAGAGAAGAAGGAAGGGACGG
TGAGGCAGCCGGTGGCTTTGGAGGTTGATGGGCCGTCGCATTTTTTTGTG
AACCATCCACAGAGGCCGACGGGGGATACGAAGATCAAGCACCAGGCGTT
ACGCTTGAGCCAGCAATGGTCGGCAATTATTTCATTGCCGCATTTTGAGT
GGCCACGGGCGAGGATGGGAGGGAAGCAGAAGAAGCCGCGGCAGCAACAG
TTAGCGTGTTTGAGGAGGAAAGTGGCGCAGACGGGGCTAGAGCCGGGAGA
TTTTTTGGTTTGAGTAAAGGAGGAAAGCGAGGAAAGACTGGGGTTGTAGA
TACGAGAGAGGGGGAAATGGTGCATGTAAAATTAAGGCGAAACGACTTAA
AGTGTACGTAAGCAAGAAGGGAGGAGACAAAGGTCACCAAGAAGGCTCAA
GTAAGAGATATATGTGTCAACCGCATGTCATGATGAGAGGGCGGTAAAAA
GAAGGGGAAATTCTGGTGGGCCGATGTTCGGATATCGATCGTATTTCTGA
TTCTGTGACGCGATATGCCTGCACGTGCGCTCCGTTGCCACCGTCTGACC
TGAAGCATCTACAGACGTAGAGATAGTAATGTGATATTGAGGGCTAGTTG
CCCAGACACTCCTCTATACAGTTCCCCAAGACTTCTCACTGTCTCTGGTT
GCTCGTAGGGGCTTCTGACCGCTTGCACGGAGGAGTATAAGAAAAAAGCT
TTCTATCCAGGCCCGCCAAGACATTTCTCGATCAGTAGAAAACAAGTCCA
AGGCGCGA
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protein sequence of NO02G04540.1

>NO02G04540.1-protein ID=NO02G04540.1-protein|Name=NO02G04540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MRTLCCLHPRPTRSALAMKHVVSVLAIVVMLLVAPRSGASSFLSRDLSFV
PPPPLQLPSPSNGRVGITSLLYARRQIPRISDNSRSGYDSGLTPSSSRPG
SPGSKTTSFSPAQAPAATAAASHTITSLIGRSDKVEVLRAIEGLPPQFLT
GATVTAAWDRLAQRTVSSGPRAPHLPPLHTDRAFLLLLERTRELLLDLSP
GHCASIVGNLAKLRYRPDDSFLTTLLSSCRAREERQTFGQAARLASGLAR
LDYILENDELERLARIMDERMKVMDLDSLHPESLSLGLWSLAVLGKLSEP
GMEGLRDGLVKAAIVRLDAVHMEATAVGLGQGPVLSEGKAKNLVRICRQL
RIALLFLPPPAATAAASAGVPAASRCSLYSGSAGSSSSTTTTTTLSSLPS
SSLSSTELLRLRINQIWLDLGAWLDPVRPSRLQTDVETTLRSNGAFFTRE
WEDGVVTVDIALHPLPVPEGSEGEKKEGTVRQPVALEVDGPSHFFVNHPQ
RPTGDTKIKHQALRLSQQWSAIISLPHFEWPRARMGGKQKKPRQQQLACL
RRKVAQTGLEPGDFLV*
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Synonyms
Publications