NO02G04540.1, NO02G04540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04540.1
Unique NameNO02G04540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2425
Alignment locationchr2:1227949..1230556 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1227949..1230556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04540.1 vs.
Match: EWM30309.1 (RAP domain protein [Nannochloropsis gaditana])

HSP 1 Score: 531.2 bits (1367), Expect = 4.000e-147
Identity = 316/561 (56.33%), Postives = 375/561 (66.84%), Query Frame = 0 
Query:   25 LAIVVMLLVAPRSGASSFLSRDLSFVPPPPLQLPSPSNGRVGITSLLYARRQIPRISDNSRSGYDSGLTPSSSRPGSPGSKTTS-FSPAQAPAATAAASHTITSLIGRSDKVEVLRAIEGLPPQFLTGATVTAAWDRLAQRTVSSGPRAPHLPPLHTDRAFLLLLERTRELLLDLSPGHCASIVGNLAKLRYRPDDSFLTTLLSSCRAREERQTFGQAARLASGLARLDYILENDELERLARIMDERMKVMDLDSLHPESLSLGLWSLAVLGKLSEPGMEGLRDGLVKAAIVRLDAVHMEATAVGLGQGPVLSEGKAKNLVRICRQLRIALLFLPPPAATAA---------------ASAGVPAASRCSLYSGSAGSSSSTTTTTTLSSLPSSSLSSTELLRLRINQIWLDLGAWLDPVRPSRLQTDVETTLRSNGAFFTREWEDGVVTVDIALHPLPV-----PEGSEGEKKEGTVRQPVALEVDGPSHFFVNHPQRPTGDTKIKHQALRLSQQWSAIISLPHFEWPRARMGGKQKKPRQQQLACLRRKVAQTGLEPGDF 565
            + +++  L+   S AS   SR   F+        + S+ +   TS L+ R++  R   +     D GL   SS       KTT+ FS + A  A+A A+ TITSLIGRSDKVEVLR IE LP   L G TV AAWDRLAQRTV +GPRAPHLPPLH DRAF +LLERTR LL DLSPGHCA++VGNLAKLRYRPDDSFL+ LL SCR+R E QTFGQAA L SGLARLDY  + DEL RLA +M+ER+  M+ D+LHPESLS+GLW+LAVLG L +P  E LR  LV+AAI RL + H EATA G GQGPVLSEGKAKNLVRICR LR ALLFL  P    +                  G  AA   SL S S  + + +       S    +LS+   LRL ++Q+WLDLGAW+DPVR SRLQ +VE+TLR  GA+ T EWED VVTVD+ALHP P+      EG+  +++ G   +PVALEVDGPSHFFVN PQRPTGDTKIKHQAL L  QWSA+ISL HFEWP         K  +QQLA L++K+AQTGLEP DF
Sbjct:   29 VGLILASLLPVYSCASPHRSRGFLFITTSTASATASSSYKF-YTSQLFGRKKAGRTKGDCA---DDGLPGGSSL-----EKTTAPFSLSDAHVASATATSTITSLIGRSDKVEVLRTIESLPSICLDGVTVAAAWDRLAQRTVPAGPRAPHLPPLHNDRAFHMLLERTRALLPDLSPGHCAAVVGNLAKLRYRPDDSFLSALLFSCRSRAEAQTFGQAAHLISGLARLDYDFKEDELGRLACLMEERLLTMEKDTLHPESLSMGLWALAVLGPLGDPSREKLRHWLVEAAIDRLASAHAEATAAGFGQGPVLSEGKAKNLVRICRLLRTALLFLSDPEVGQSGKKASGTSGGWEGKEVGEGRRAAKTPSLASVSRPAPALSPCYPLAVSNDDLNLSAFAKLRLCVDQVWLDLGAWVDPVRSSRLQMEVESTLRYGGAYCTGEWEDEVVTVDVALHPRPMSGSEDAEGAREDRRGGRRVRPVALEVDGPSHFFVNQPQRPTGDTKIKHQALHLGGQWSAVISLAHFEWP---------KSSKQQLAVLKKKIAQTGLEPKDF 571
The following BLAST results are available for this feature:
BLAST of NO02G04540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30309.14.000e-14756.33RAP domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04540NO02G04540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04540.1NO02G04540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04540.1.cds1NO02G04540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04540.1.cds2NO02G04540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04540.1 ID=NO02G04540.1|Name=NO02G04540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2425bp
CGTTGGGTCGAATGGTGGTGGGGCATGCGGTCCGAGCCCCAGCCCATGCC
CTCAGCCAGTTACATATCAGACTCCAACACACACACCATATCACAACCTA
TGGACACAAAAAATCAACTCTAGTAGTTACCAGGCGACGAATCGCAAGCT
ACATGCCGCTCCATCGTTAACAAGCGCTGCAAGCACCTGGAGCAAGTTGG
AGAGCAAGAGCGAGAATTACACTATCACGATGCGTACACTTTGCTGTCTC
CATCCAAGACCCACGAGAAGTGCCTTGGCCATGAAGCATGTTGTGTCAGT
CCTTGCCATCGTCGTTATGCTGCTGGTGGCCCCGAGAAGTGGCGCATCCT
CATTTCTGTCAAGAGATCTCTCTTTCGTCCCGCCACCACCGCTACAACTC
CCGTCACCCTCCAACGGCCGTGTGGGCATCACCAGCCTTCTCTATGCGCG
ACGACAAATTCCACGAATCAGTGACAACAGCAGAAGTGGCTATGACTCCG
GCCTGACACCAAGTAGCAGTCGCCCCGGCAGCCCGGGAAGTAAAACGACC
TCTTTCTCTCCTGCCCAAGCGCCCGCCGCAACAGCCGCCGCATCCCACAC
CATCACCAGCCTGATCGGGCGAAGCGACAAAGTAGAAGTCCTTCGAGCGA
TTGAAGGCCTCCCTCCTCAATTTTTAACCGGGGCCACCGTCACTGCTGCA
TGGGACCGCCTTGCCCAACGTACTGTTTCGTCTGGCCCCCGCGCCCCTCA
CCTTCCCCCTTTGCACACAGACCGTGCCTTCCTCCTCCTCCTTGAACGGA
CCCGCGAATTACTGCTTGATCTCTCCCCAGGGCATTGCGCTTCTATCGTT
GGTAATCTTGCGAAGCTCCGTTATCGTCCTGATGATTCATTTCTCACCAC
GTTGCTCTCCTCTTGCCGTGCGCGGGAGGAGCGGCAAACCTTTGGCCAAG
CGGCGCGGTTGGCGTCAGGATTGGCGAGGTTGGATTATATTTTGGAGAAC
GATGAGCTGGAGAGATTGGCAAGGATTATGGATGAAAGAATGAAGGTAAT
GGATTTGGATAGCTTGCATCCGGAGAGTCTGTCGCTGGGGTTGTGGTCTT
TGGCCGTGTTGGGTAAGCTGTCGGAGCCGGGGATGGAGGGGTTGAGGGAC
GGCTTGGTGAAGGCGGCGATTGTGCGGTTGGATGCTGTGCATATGGAGGC
GACGGCGGTGGGACTTGGGCAGGGGCCAGTTTTGTCGGAGGGAAAGGCTA
AGAATTTGGTGCGGATTTGCAGACAGTTGAGGATAGCGTTGCTGTTTTTG
CCGCCTCCTGCTGCTACTGCTGCTGCTTCTGCGGGTGTGCCTGCAGCGTC
ACGTTGTTCACTCTATTCTGGCTCAGCTGGCAGCAGCAGCAGCACCACCA
CCACCACCACCCTCTCTTCCCTCCCTTCATCCTCCTTATCCTCTACCGAG
CTCCTTCGACTTCGGATCAACCAAATCTGGCTCGATCTCGGCGCTTGGCT
TGACCCTGTCCGTCCTTCCCGTCTTCAAACGGACGTTGAAACGACCCTCC
GCTCCAACGGTGCCTTCTTTACGAGGGAATGGGAGGACGGCGTGGTCACT
GTAGATATCGCCTTGCACCCACTACCGGTTCCCGAAGGGAGCGAGGGAGA
GAAGAAGGAAGGGACGGTGAGGCAGCCGGTGGCTTTGGAGGTTGATGGGC
CGTCGCATTTTTTTGTGAACCATCCACAGAGGCCGACGGGGGATACGAAG
ATCAAGCACCAGGCGTTACGCTTGAGCCAGCAATGGTCGGCAATTATTTC
ATTGCCGCATTTTGAGTGGCCACGGGCGAGGATGGGAGGGAAGCAGAAGA
AGCCGCGGCAGCAACAGTTAGCGTGTTTGAGGAGGAAAGTGGCGCAGACG
GGGCTAGAGCCGGGAGATTTTTTGGTTTGAGTAAAGGAGGAAAGCGAGGA
AAGACTGGGGTTGTAGATACGAGAGAGGGGGAAATGGTGCATGTAAAATT
AAGGCGAAACGACTTAAAGTGTACGTAAGCAAGAAGGGAGGAGACAAAGG
TCACCAAGAAGGCTCAAGTAAGAGATATATGTGTCAACCGCATGTCATGA
TGAGAGGGCGGTAAAAAGAAGGGGAAATTCTGGTGGGCCGATGTTCGGAT
ATCGATCGTATTTCTGATTCTGTGACGCGATATGCCTGCACGTGCGCTCC
GTTGCCACCGTCTGACCTGAAGCATCTACAGACGTAGAGATAGTAATGTG
ATATTGAGGGCTAGTTGCCCAGACACTCCTCTATACAGTTCCCCAAGACT
TCTCACTGTCTCTGGTTGCTCGTAGGGGCTTCTGACCGCTTGCACGGAGG
AGTATAAGAAAAAAGCTTTCTATCCAGGCCCGCCAAGACATTTCTCGATC
AGTAGAAAACAAGTCCAAGGCGCGA
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protein sequence of NO02G04540.1

>NO02G04540.1-protein ID=NO02G04540.1-protein|Name=NO02G04540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MRTLCCLHPRPTRSALAMKHVVSVLAIVVMLLVAPRSGASSFLSRDLSFV
PPPPLQLPSPSNGRVGITSLLYARRQIPRISDNSRSGYDSGLTPSSSRPG
SPGSKTTSFSPAQAPAATAAASHTITSLIGRSDKVEVLRAIEGLPPQFLT
GATVTAAWDRLAQRTVSSGPRAPHLPPLHTDRAFLLLLERTRELLLDLSP
GHCASIVGNLAKLRYRPDDSFLTTLLSSCRAREERQTFGQAARLASGLAR
LDYILENDELERLARIMDERMKVMDLDSLHPESLSLGLWSLAVLGKLSEP
GMEGLRDGLVKAAIVRLDAVHMEATAVGLGQGPVLSEGKAKNLVRICRQL
RIALLFLPPPAATAAASAGVPAASRCSLYSGSAGSSSSTTTTTTLSSLPS
SSLSSTELLRLRINQIWLDLGAWLDPVRPSRLQTDVETTLRSNGAFFTRE
WEDGVVTVDIALHPLPVPEGSEGEKKEGTVRQPVALEVDGPSHFFVNHPQ
RPTGDTKIKHQALRLSQQWSAIISLPHFEWPRARMGGKQKKPRQQQLACL
RRKVAQTGLEPGDFLV*
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mRNA from alignment at chr2:1227949..1230556+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04540.1 ID=NO02G04540.1|Name=NO02G04540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2608bp|location=Sequence derived from alignment at chr2:1227949..1230556+ (Nannochloropsis oceanica)
CGTTGGGTCGAATGGTGGTGGGGCATGCGGTCCGAGCCCCAGCCCATGCC
CTCAGCCAGTTACATATCAGACTCCAACACACACACCATATCACAACCTA
TGGACACAAAAAATCAACTCTAGTAGTTACCAGGCGACGAATCGCAAGCT
ACATGCCGCTCCATCGTTAACAAGCGCTGCAAGCACCTGGAGCAAGTTGG
AGAGCAAGAGCGAGAATTACACTATCACGATGCGTACACTTTGCTGTCTC
CATCCAAGACCCACGAGAAGTGCCTTGGCCATGAAGCATGTTGTGTCAGT
CCTTGCCATCGTCGTTATGCTGCTGGTGGCCCCGAGAAGTGGCGCATCCT
CATTTCTGTCAAGAGGTAAGAGGCAGTCGAGGCAGAGTACCCCCCTTATA
CTGGTTGAACCGCACCACTAATACCGCAGCTGACAACCATAGCGTGCTCG
TTTCTCTTACGTCAAACGCGCATTGACAGAAAAGACAATAGGAACATTCT
TTGTCTCTCGCCGTCTCTCACCTCCTCCCAACTTCCACCCCATTTCAGAT
CTCTCTTTCGTCCCGCCACCACCGCTACAACTCCCGTCACCCTCCAACGG
CCGTGTGGGCATCACCAGCCTTCTCTATGCGCGACGACAAATTCCACGAA
TCAGTGACAACAGCAGAAGTGGCTATGACTCCGGCCTGACACCAAGTAGC
AGTCGCCCCGGCAGCCCGGGAAGTAAAACGACCTCTTTCTCTCCTGCCCA
AGCGCCCGCCGCAACAGCCGCCGCATCCCACACCATCACCAGCCTGATCG
GGCGAAGCGACAAAGTAGAAGTCCTTCGAGCGATTGAAGGCCTCCCTCCT
CAATTTTTAACCGGGGCCACCGTCACTGCTGCATGGGACCGCCTTGCCCA
ACGTACTGTTTCGTCTGGCCCCCGCGCCCCTCACCTTCCCCCTTTGCACA
CAGACCGTGCCTTCCTCCTCCTCCTTGAACGGACCCGCGAATTACTGCTT
GATCTCTCCCCAGGGCATTGCGCTTCTATCGTTGGTAATCTTGCGAAGCT
CCGTTATCGTCCTGATGATTCATTTCTCACCACGTTGCTCTCCTCTTGCC
GTGCGCGGGAGGAGCGGCAAACCTTTGGCCAAGCGGCGCGGTTGGCGTCA
GGATTGGCGAGGTTGGATTATATTTTGGAGAACGATGAGCTGGAGAGATT
GGCAAGGATTATGGATGAAAGAATGAAGGTAATGGATTTGGATAGCTTGC
ATCCGGAGAGTCTGTCGCTGGGGTTGTGGTCTTTGGCCGTGTTGGGTAAG
CTGTCGGAGCCGGGGATGGAGGGGTTGAGGGACGGCTTGGTGAAGGCGGC
GATTGTGCGGTTGGATGCTGTGCATATGGAGGCGACGGCGGTGGGACTTG
GGCAGGGGCCAGTTTTGTCGGAGGGAAAGGCTAAGAATTTGGTGCGGATT
TGCAGACAGTTGAGGATAGCGTTGCTGTTTTTGCCGCCTCCTGCTGCTAC
TGCTGCTGCTTCTGCGGGTGTGCCTGCAGCGTCACGTTGTTCACTCTATT
CTGGCTCAGCTGGCAGCAGCAGCAGCACCACCACCACCACCACCCTCTCT
TCCCTCCCTTCATCCTCCTTATCCTCTACCGAGCTCCTTCGACTTCGGAT
CAACCAAATCTGGCTCGATCTCGGCGCTTGGCTTGACCCTGTCCGTCCTT
CCCGTCTTCAAACGGACGTTGAAACGACCCTCCGCTCCAACGGTGCCTTC
TTTACGAGGGAATGGGAGGACGGCGTGGTCACTGTAGATATCGCCTTGCA
CCCACTACCGGTTCCCGAAGGGAGCGAGGGAGAGAAGAAGGAAGGGACGG
TGAGGCAGCCGGTGGCTTTGGAGGTTGATGGGCCGTCGCATTTTTTTGTG
AACCATCCACAGAGGCCGACGGGGGATACGAAGATCAAGCACCAGGCGTT
ACGCTTGAGCCAGCAATGGTCGGCAATTATTTCATTGCCGCATTTTGAGT
GGCCACGGGCGAGGATGGGAGGGAAGCAGAAGAAGCCGCGGCAGCAACAG
TTAGCGTGTTTGAGGAGGAAAGTGGCGCAGACGGGGCTAGAGCCGGGAGA
TTTTTTGGTTTGAGTAAAGGAGGAAAGCGAGGAAAGACTGGGGTTGTAGA
TACGAGAGAGGGGGAAATGGTGCATGTAAAATTAAGGCGAAACGACTTAA
AGTGTACGTAAGCAAGAAGGGAGGAGACAAAGGTCACCAAGAAGGCTCAA
GTAAGAGATATATGTGTCAACCGCATGTCATGATGAGAGGGCGGTAAAAA
GAAGGGGAAATTCTGGTGGGCCGATGTTCGGATATCGATCGTATTTCTGA
TTCTGTGACGCGATATGCCTGCACGTGCGCTCCGTTGCCACCGTCTGACC
TGAAGCATCTACAGACGTAGAGATAGTAATGTGATATTGAGGGCTAGTTG
CCCAGACACTCCTCTATACAGTTCCCCAAGACTTCTCACTGTCTCTGGTT
GCTCGTAGGGGCTTCTGACCGCTTGCACGGAGGAGTATAAGAAAAAAGCT
TTCTATCCAGGCCCGCCAAGACATTTCTCGATCAGTAGAAAACAAGTCCA
AGGCGCGA
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Coding sequence (CDS) from alignment at chr2:1227949..1230556+

>NO02G04540.1 ID=NO02G04540.1|Name=NO02G04540.1|organism=Nannochloropsis oceanica|type=CDS|length=1701bp|location=Sequence derived from alignment at chr2:1227949..1230556+ (Nannochloropsis oceanica)
ATGCGTACACTTTGCTGTCTCCATCCAAGACCCACGAGAAGTGCCTTGGC
CATGAAGCATGTTGTGTCAGTCCTTGCCATCGTCGTTATGCTGCTGGTGG
CCCCGAGAAGTGGCGCATCCTCATTTCTGTCAAGAGATCTCTCTTTCGTC
CCGCCACCACCGCTACAACTCCCGTCACCCTCCAACGGCCGTGTGGGCAT
CACCAGCCTTCTCTATGCGCGACGACAAATTCCACGAATCAGTGACAACA
GCAGAAGTGGCTATGACTCCGGCCTGACACCAAGTAGCAGTCGCCCCGGC
AGCCCGGGAAGTAAAACGACCTCTTTCTCTCCTGCCCAAGCGCCCGCCGC
AACAGCCGCCGCATCCCACACCATCACCAGCCTGATCGGGCGAAGCGACA
AAGTAGAAGTCCTTCGAGCGATTGAAGGCCTCCCTCCTCAATTTTTAACC
GGGGCCACCGTCACTGCTGCATGGGACCGCCTTGCCCAACGTACTGTTTC
GTCTGGCCCCCGCGCCCCTCACCTTCCCCCTTTGCACACAGACCGTGCCT
TCCTCCTCCTCCTTGAACGGACCCGCGAATTACTGCTTGATCTCTCCCCA
GGGCATTGCGCTTCTATCGTTGGTAATCTTGCGAAGCTCCGTTATCGTCC
TGATGATTCATTTCTCACCACGTTGCTCTCCTCTTGCCGTGCGCGGGAGG
AGCGGCAAACCTTTGGCCAAGCGGCGCGGTTGGCGTCAGGATTGGCGAGG
TTGGATTATATTTTGGAGAACGATGAGCTGGAGAGATTGGCAAGGATTAT
GGATGAAAGAATGAAGGTAATGGATTTGGATAGCTTGCATCCGGAGAGTC
TGTCGCTGGGGTTGTGGTCTTTGGCCGTGTTGGGTAAGCTGTCGGAGCCG
GGGATGGAGGGGTTGAGGGACGGCTTGGTGAAGGCGGCGATTGTGCGGTT
GGATGCTGTGCATATGGAGGCGACGGCGGTGGGACTTGGGCAGGGGCCAG
TTTTGTCGGAGGGAAAGGCTAAGAATTTGGTGCGGATTTGCAGACAGTTG
AGGATAGCGTTGCTGTTTTTGCCGCCTCCTGCTGCTACTGCTGCTGCTTC
TGCGGGTGTGCCTGCAGCGTCACGTTGTTCACTCTATTCTGGCTCAGCTG
GCAGCAGCAGCAGCACCACCACCACCACCACCCTCTCTTCCCTCCCTTCA
TCCTCCTTATCCTCTACCGAGCTCCTTCGACTTCGGATCAACCAAATCTG
GCTCGATCTCGGCGCTTGGCTTGACCCTGTCCGTCCTTCCCGTCTTCAAA
CGGACGTTGAAACGACCCTCCGCTCCAACGGTGCCTTCTTTACGAGGGAA
TGGGAGGACGGCGTGGTCACTGTAGATATCGCCTTGCACCCACTACCGGT
TCCCGAAGGGAGCGAGGGAGAGAAGAAGGAAGGGACGGTGAGGCAGCCGG
TGGCTTTGGAGGTTGATGGGCCGTCGCATTTTTTTGTGAACCATCCACAG
AGGCCGACGGGGGATACGAAGATCAAGCACCAGGCGTTACGCTTGAGCCA
GCAATGGTCGGCAATTATTTCATTGCCGCATTTTGAGTGGCCACGGGCGA
GGATGGGAGGGAAGCAGAAGAAGCCGCGGCAGCAACAGTTAGCGTGTTTG
AGGAGGAAAGTGGCGCAGACGGGGCTAGAGCCGGGAGATTTTTTGGTTTG
A
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Synonyms
Publications