NO02G04330, NO02G04330 (gene) Nannochloropsis oceanica

Overview
NameNO02G04330
Unique NameNO02G04330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1255
Alignment locationchr2:1170749..1172003 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1170749..1172003 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO02G04330 vs. NCBI_GenBank
Match: EWM30204.1 (hypothetical protein Naga_100003g44 [Nannochloropsis gaditana])

HSP 1 Score: 338.2 bits (866), Expect = 2.300e-89
Identity = 170/265 (64.15%), Postives = 204/265 (76.98%), Query Frame = 0 
Query:    1 MVLVASLLYLARARIALSTIFALTYLLFPRFASWQIDSLRYASMSISPLDWAISLEMDVGVSVFNPNHVPARLHNATLDIYRVRPTYISGMHQAPTYGRKFGVATASAHDIPRRDSFPLDSHISIVRLPFSVACSFLREMATNEGLIKVRGVGQALVSAAAQDVTVFVDCLQHVKPFPHPGRIVHTACTYTIANGGGANGALLDLLQLQLGPGWGKTRRGTRHEGQDQQHVLGSGSNSSSGKGGGIEGEMMLKAVVAAAQASEGL 266
            MVL  SLLYL+RA   LST+ ALTYL FPRF  WQIDSLRY+SM+ISP D AISLEMDVGVS+FNPNH+ +RLHNATLDIYRV+PT+ISG HQAPTYG  FGVA    H++PRRD+F LDSH+SIVRLPF+V CSF+RE+  N+G++K+RGVGQA +SAAAQDVTV VDC QHV+PFPHPGRIVHTAC + +ANGGG NG+LLDLLQLQLG  WG+ R   + +G   +  + +           I    M++ V+A  QA EGL
Sbjct:    1 MVLAPSLLYLSRAPFTLSTLVALTYLFFPRFGMWQIDSLRYSSMTISPWDLAISLEMDVGVSMFNPNHINSRLHNATLDIYRVQPTHISGAHQAPTYGTSFGVARTHFHEVPRRDTFYLDSHVSIVRLPFAVLCSFMRELLLNKGVVKMRGVGQAWISAAAQDVTVLVDCFQHVQPFPHPGRIVHTACNFKLANGGGMNGSLLDLLQLQLGTEWGEIRGRKKQQGHKARKSVRAKEE--------ICDATMIRGVIAEVQACEGL 257
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BLAST of NO02G04330 vs. NCBI_GenBank
Match: CBJ29674.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 81.3 bits (199), Expect = 5.100e-12
Identity = 50/172 (29.07%), Postives = 87/172 (50.58%), Query Frame = 0 
Query:   26 LLFPRFASWQIDSLRYASMSISPLDWAISLEMDVGVSVFNPNHVPARLHNATLDIYRVRPTYISGMHQAPTYGRKFGVAT---ASAHDIPRRDSFPLDSHISIVRLPFSVACSFLREMATNEGLIKVRGVGQALVSAAAQDVTVFVDCLQHVKPFPHPGRIVHTACTYTIAN 195
            ++FPR  +WQI  ++Y  +S++     + +++D+G+ VFNPN+VPA L    + ++        G  +AP     FGV T    +A  +P R S  + + + +V LP S+A    +++A + G+I  R      V     D+ +  DC+QH++    P +I    C Y   N
Sbjct:   19 VMFPRAPTWQIVDMKYRGLSMNIASIGVDMKIDMGLEVFNPNYVPATLKGIVMTMFHED----LGGEEAP-----FGVVTFAGENAARLPARGSAVVQAQMEVVSLPTSMAMGIAKDVA-DGGVIVSRASAFMDVKVMGGDILIEADCVQHMQADVFPIKINEIDCKYYYKN 180
The following BLAST results are available for this feature:
BLAST of NO02G04330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM30204.12.300e-8964.15hypothetical protein Naga_100003g44 [Nannochlorops... [more]
CBJ29674.15.100e-1229.07expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007095NSK007095Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04330.1NO02G04330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667979gene_1022Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g44gene422Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04330.1NO02G04330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04330 ID=NO02G04330|Name=NO02G04330|organism=Nannochloropsis oceanica|type=gene|length=1255bp
CATCAGAGGCATATTCTGCTTGCCGTGGACAGCCGTCCCCTTCTCAGCTG
TAGCGGGCAACACAAGGCGTCGACGCAAATATGGGCAGGATCGGTGTGCC
TGCTTTGCACTAGCAAGTCCCTTTGGAAGCCCGAGGCGCAAGCATTGCTG
CCGGCCACACGTCTGTGCTGCGTCAATACGTCGTGGACCAGGTCTCCCAA
AACCACACGCGGGCCAACTGATCCCGACTCACAAGCCCGCGGGACACGCT
GCCCTCGACCCCAAGTCCTCGTTTGAATCTCTCCTGATTCCCAACTTTCC
CTACGGTGTTCCCAAAAGATGGTCCTGGTCGCCTCTCTCCTCTACCTCGC
CCGTGCGCGCATTGCCCTCTCTACAATCTTCGCCTTGACGTACCTGCTCT
TCCCCCGCTTCGCTTCCTGGCAGATCGATTCCTTGCGCTACGCAAGCATG
AGCATTTCGCCCTTGGACTGGGCTATATCTCTAGAAATGGACGTGGGGGT
CTCTGTGTTCAATCCTAACCATGTTCCCGCCCGGTTGCACAATGCTACCC
TGGATATATATCGCGTTCGGCCCACTTACATCAGTGGCATGCACCAAGCC
CCCACGTACGGCAGAAAATTTGGCGTGGCCACCGCTTCGGCACATGATAT
CCCGCGACGAGATTCCTTTCCATTGGACAGTCATATCTCCATTGTGCGCC
TTCCTTTTTCAGTAGCCTGCTCTTTTCTCCGGGAGATGGCCACGAATGAA
GGATTAATCAAAGTGAGGGGTGTAGGACAGGCATTGGTCTCAGCAGCAGC
GCAAGATGTGACAGTGTTTGTCGACTGCTTGCAGCATGTTAAACCCTTTC
CACACCCGGGCAGAATAGTGCACACGGCGTGTACTTACACTATTGCGAAT
GGTGGGGGTGCGAATGGCGCGCTGTTGGATTTGCTTCAGTTGCAGTTGGG
ACCAGGGTGGGGGAAGACGAGGAGGGGGACGAGACATGAGGGGCAGGACC
AGCAGCACGTTTTGGGTAGTGGGAGCAACAGTAGTAGTGGGAAAGGAGGG
GGGATAGAAGGAGAGATGATGCTCAAGGCGGTGGTGGCCGCGGCACAAGC
AAGCGAAGGGCTTTGAGTCAATCATAGAAGTTGTGAATAGCTTTACATTT
TGAAACACAGCGAACAACAACTGGGGTTAAGAGGAAGGTGAAAGAGTAGC
TGGTGGATATTGGGCACTTTCTGTACAGCGGCAAAACATTTATAGTAGGC
TTGCA
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protein sequence of NO02G04330.1

>NO02G04330.1-protein ID=NO02G04330.1-protein|Name=NO02G04330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MVLVASLLYLARARIALSTIFALTYLLFPRFASWQIDSLRYASMSISPLD
WAISLEMDVGVSVFNPNHVPARLHNATLDIYRVRPTYISGMHQAPTYGRK
FGVATASAHDIPRRDSFPLDSHISIVRLPFSVACSFLREMATNEGLIKVR
GVGQALVSAAAQDVTVFVDCLQHVKPFPHPGRIVHTACTYTIANGGGANG
ALLDLLQLQLGPGWGKTRRGTRHEGQDQQHVLGSGSNSSSGKGGGIEGEM
MLKAVVAAAQASEGL*
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Synonyms
Publications