NO02G04330.1, NO02G04330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04330.1
Unique NameNO02G04330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1255
Alignment locationchr2:1170749..1172003 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1170749..1172003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04330.1 vs.
Match: EWM30204.1 (hypothetical protein Naga_100003g44 [Nannochloropsis gaditana])

HSP 1 Score: 338.2 bits (866), Expect = 2.300e-89
Identity = 170/265 (64.15%), Postives = 204/265 (76.98%), Query Frame = 0 
Query:    1 MVLVASLLYLARARIALSTIFALTYLLFPRFASWQIDSLRYASMSISPLDWAISLEMDVGVSVFNPNHVPARLHNATLDIYRVRPTYISGMHQAPTYGRKFGVATASAHDIPRRDSFPLDSHISIVRLPFSVACSFLREMATNEGLIKVRGVGQALVSAAAQDVTVFVDCLQHVKPFPHPGRIVHTACTYTIANGGGANGALLDLLQLQLGPGWGKTRRGTRHEGQDQQHVLGSGSNSSSGKGGGIEGEMMLKAVVAAAQASEGL 266
            MVL  SLLYL+RA   LST+ ALTYL FPRF  WQIDSLRY+SM+ISP D AISLEMDVGVS+FNPNH+ +RLHNATLDIYRV+PT+ISG HQAPTYG  FGVA    H++PRRD+F LDSH+SIVRLPF+V CSF+RE+  N+G++K+RGVGQA +SAAAQDVTV VDC QHV+PFPHPGRIVHTAC + +ANGGG NG+LLDLLQLQLG  WG+ R   + +G   +  + +           I    M++ V+A  QA EGL
Sbjct:    1 MVLAPSLLYLSRAPFTLSTLVALTYLFFPRFGMWQIDSLRYSSMTISPWDLAISLEMDVGVSMFNPNHINSRLHNATLDIYRVQPTHISGAHQAPTYGTSFGVARTHFHEVPRRDTFYLDSHVSIVRLPFAVLCSFMRELLLNKGVVKMRGVGQAWISAAAQDVTVLVDCFQHVQPFPHPGRIVHTACNFKLANGGGMNGSLLDLLQLQLGTEWGEIRGRKKQQGHKARKSVRAKEE--------ICDATMIRGVIAEVQACEGL 257
The following BLAST results are available for this feature:
BLAST of NO02G04330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30204.12.300e-8964.15hypothetical protein Naga_100003g44 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04330NO02G04330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04330.1NO02G04330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04330.1.cds1NO02G04330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04330.1 ID=NO02G04330.1|Name=NO02G04330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1255bp
CATCAGAGGCATATTCTGCTTGCCGTGGACAGCCGTCCCCTTCTCAGCTG
TAGCGGGCAACACAAGGCGTCGACGCAAATATGGGCAGGATCGGTGTGCC
TGCTTTGCACTAGCAAGTCCCTTTGGAAGCCCGAGGCGCAAGCATTGCTG
CCGGCCACACGTCTGTGCTGCGTCAATACGTCGTGGACCAGGTCTCCCAA
AACCACACGCGGGCCAACTGATCCCGACTCACAAGCCCGCGGGACACGCT
GCCCTCGACCCCAAGTCCTCGTTTGAATCTCTCCTGATTCCCAACTTTCC
CTACGGTGTTCCCAAAAGATGGTCCTGGTCGCCTCTCTCCTCTACCTCGC
CCGTGCGCGCATTGCCCTCTCTACAATCTTCGCCTTGACGTACCTGCTCT
TCCCCCGCTTCGCTTCCTGGCAGATCGATTCCTTGCGCTACGCAAGCATG
AGCATTTCGCCCTTGGACTGGGCTATATCTCTAGAAATGGACGTGGGGGT
CTCTGTGTTCAATCCTAACCATGTTCCCGCCCGGTTGCACAATGCTACCC
TGGATATATATCGCGTTCGGCCCACTTACATCAGTGGCATGCACCAAGCC
CCCACGTACGGCAGAAAATTTGGCGTGGCCACCGCTTCGGCACATGATAT
CCCGCGACGAGATTCCTTTCCATTGGACAGTCATATCTCCATTGTGCGCC
TTCCTTTTTCAGTAGCCTGCTCTTTTCTCCGGGAGATGGCCACGAATGAA
GGATTAATCAAAGTGAGGGGTGTAGGACAGGCATTGGTCTCAGCAGCAGC
GCAAGATGTGACAGTGTTTGTCGACTGCTTGCAGCATGTTAAACCCTTTC
CACACCCGGGCAGAATAGTGCACACGGCGTGTACTTACACTATTGCGAAT
GGTGGGGGTGCGAATGGCGCGCTGTTGGATTTGCTTCAGTTGCAGTTGGG
ACCAGGGTGGGGGAAGACGAGGAGGGGGACGAGACATGAGGGGCAGGACC
AGCAGCACGTTTTGGGTAGTGGGAGCAACAGTAGTAGTGGGAAAGGAGGG
GGGATAGAAGGAGAGATGATGCTCAAGGCGGTGGTGGCCGCGGCACAAGC
AAGCGAAGGGCTTTGAGTCAATCATAGAAGTTGTGAATAGCTTTACATTT
TGAAACACAGCGAACAACAACTGGGGTTAAGAGGAAGGTGAAAGAGTAGC
TGGTGGATATTGGGCACTTTCTGTACAGCGGCAAAACATTTATAGTAGGC
TTGCA
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protein sequence of NO02G04330.1

>NO02G04330.1-protein ID=NO02G04330.1-protein|Name=NO02G04330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MVLVASLLYLARARIALSTIFALTYLLFPRFASWQIDSLRYASMSISPLD
WAISLEMDVGVSVFNPNHVPARLHNATLDIYRVRPTYISGMHQAPTYGRK
FGVATASAHDIPRRDSFPLDSHISIVRLPFSVACSFLREMATNEGLIKVR
GVGQALVSAAAQDVTVFVDCLQHVKPFPHPGRIVHTACTYTIANGGGANG
ALLDLLQLQLGPGWGKTRRGTRHEGQDQQHVLGSGSNSSSGKGGGIEGEM
MLKAVVAAAQASEGL*
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mRNA from alignment at chr2:1170749..1172003+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04330.1 ID=NO02G04330.1|Name=NO02G04330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1255bp|location=Sequence derived from alignment at chr2:1170749..1172003+ (Nannochloropsis oceanica)
CATCAGAGGCATATTCTGCTTGCCGTGGACAGCCGTCCCCTTCTCAGCTG
TAGCGGGCAACACAAGGCGTCGACGCAAATATGGGCAGGATCGGTGTGCC
TGCTTTGCACTAGCAAGTCCCTTTGGAAGCCCGAGGCGCAAGCATTGCTG
CCGGCCACACGTCTGTGCTGCGTCAATACGTCGTGGACCAGGTCTCCCAA
AACCACACGCGGGCCAACTGATCCCGACTCACAAGCCCGCGGGACACGCT
GCCCTCGACCCCAAGTCCTCGTTTGAATCTCTCCTGATTCCCAACTTTCC
CTACGGTGTTCCCAAAAGATGGTCCTGGTCGCCTCTCTCCTCTACCTCGC
CCGTGCGCGCATTGCCCTCTCTACAATCTTCGCCTTGACGTACCTGCTCT
TCCCCCGCTTCGCTTCCTGGCAGATCGATTCCTTGCGCTACGCAAGCATG
AGCATTTCGCCCTTGGACTGGGCTATATCTCTAGAAATGGACGTGGGGGT
CTCTGTGTTCAATCCTAACCATGTTCCCGCCCGGTTGCACAATGCTACCC
TGGATATATATCGCGTTCGGCCCACTTACATCAGTGGCATGCACCAAGCC
CCCACGTACGGCAGAAAATTTGGCGTGGCCACCGCTTCGGCACATGATAT
CCCGCGACGAGATTCCTTTCCATTGGACAGTCATATCTCCATTGTGCGCC
TTCCTTTTTCAGTAGCCTGCTCTTTTCTCCGGGAGATGGCCACGAATGAA
GGATTAATCAAAGTGAGGGGTGTAGGACAGGCATTGGTCTCAGCAGCAGC
GCAAGATGTGACAGTGTTTGTCGACTGCTTGCAGCATGTTAAACCCTTTC
CACACCCGGGCAGAATAGTGCACACGGCGTGTACTTACACTATTGCGAAT
GGTGGGGGTGCGAATGGCGCGCTGTTGGATTTGCTTCAGTTGCAGTTGGG
ACCAGGGTGGGGGAAGACGAGGAGGGGGACGAGACATGAGGGGCAGGACC
AGCAGCACGTTTTGGGTAGTGGGAGCAACAGTAGTAGTGGGAAAGGAGGG
GGGATAGAAGGAGAGATGATGCTCAAGGCGGTGGTGGCCGCGGCACAAGC
AAGCGAAGGGCTTTGAGTCAATCATAGAAGTTGTGAATAGCTTTACATTT
TGAAACACAGCGAACAACAACTGGGGTTAAGAGGAAGGTGAAAGAGTAGC
TGGTGGATATTGGGCACTTTCTGTACAGCGGCAAAACATTTATAGTAGGC
TTGCA
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Coding sequence (CDS) from alignment at chr2:1170749..1172003+

>NO02G04330.1 ID=NO02G04330.1|Name=NO02G04330.1|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at chr2:1170749..1172003+ (Nannochloropsis oceanica)
ATGGTCCTGGTCGCCTCTCTCCTCTACCTCGCCCGTGCGCGCATTGCCCT
CTCTACAATCTTCGCCTTGACGTACCTGCTCTTCCCCCGCTTCGCTTCCT
GGCAGATCGATTCCTTGCGCTACGCAAGCATGAGCATTTCGCCCTTGGAC
TGGGCTATATCTCTAGAAATGGACGTGGGGGTCTCTGTGTTCAATCCTAA
CCATGTTCCCGCCCGGTTGCACAATGCTACCCTGGATATATATCGCGTTC
GGCCCACTTACATCAGTGGCATGCACCAAGCCCCCACGTACGGCAGAAAA
TTTGGCGTGGCCACCGCTTCGGCACATGATATCCCGCGACGAGATTCCTT
TCCATTGGACAGTCATATCTCCATTGTGCGCCTTCCTTTTTCAGTAGCCT
GCTCTTTTCTCCGGGAGATGGCCACGAATGAAGGATTAATCAAAGTGAGG
GGTGTAGGACAGGCATTGGTCTCAGCAGCAGCGCAAGATGTGACAGTGTT
TGTCGACTGCTTGCAGCATGTTAAACCCTTTCCACACCCGGGCAGAATAG
TGCACACGGCGTGTACTTACACTATTGCGAATGGTGGGGGTGCGAATGGC
GCGCTGTTGGATTTGCTTCAGTTGCAGTTGGGACCAGGGTGGGGGAAGAC
GAGGAGGGGGACGAGACATGAGGGGCAGGACCAGCAGCACGTTTTGGGTA
GTGGGAGCAACAGTAGTAGTGGGAAAGGAGGGGGGATAGAAGGAGAGATG
ATGCTCAAGGCGGTGGTGGCCGCGGCACAAGCAAGCGAAGGGCTTTGA
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Synonyms
Publications