NO02G04230, NO02G04230 (gene) Nannochloropsis oceanica

Overview
NameNO02G04230
Unique NameNO02G04230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1815
Alignment locationchr2:1151334..1153148 +

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Properties
Property NameValue
DescriptionProtein TsetseEP
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1151334..1153148 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO02G04230 vs. NCBI_GenBank
Match: EWM30357.1 (soluble nsf attachment protein receptor [Nannochloropsis gaditana])

HSP 1 Score: 169.1 bits (427), Expect = 3.600e-38
Identity = 81/109 (74.31%), Postives = 97/109 (88.99%), Query Frame = 0
Query:    1 MVEATKKVGANTVVELKRQTDQIADITDTVDAMENGLTRADKLIRAFGRRIATDKFIQFFFVLNCMLLIGIVTWYAVKKGKIKPPHLNTPPLPTFDEVFGSGGSSDSGT 110
            MVEA+K+VGANTV E+ RQ +QIA+ITDTV+AME+GLTRADKLIRAFGRRIATDKFIQFFFVLN  LL+GI+ WYAVKKGK++ P ++ PP+PTFDEVFGSGG  ++ T
Sbjct:  144 MVEASKQVGANTVDEVNRQKEQIAEITDTVEAMEDGLTRADKLIRAFGRRIATDKFIQFFFVLNFGLLVGIIVWYAVKKGKVRAPEIHAPPMPTFDEVFGSGGGDNTST 252          
BLAST of NO02G04230 vs. NCBI_GenBank
Match: XP_002289353.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92890.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 79.0 bits (193), Expect = 4.800e-11
Identity = 39/82 (47.56%), Postives = 59/82 (71.95%), Query Frame = 0
Query:    1 MVEATKKVGANTVVELKRQTDQIADITDTVDAMENGLTRADKLIRAFGRRIATDKFIQFFFVLNCMLLIGIVTWYAVKKGKI 83
            MV A+K+VG  T+ EL RQ +QI ++ +    +E+ L RADKLI+ FG+R+ATD+FIQ F  +N +LL+G+V +  +KKG +
Sbjct:  118 MVAASKEVGEATMEELLRQREQIRNVDNEAMRIEDNLQRADKLIKTFGKRMATDRFIQCFACINILLLVGVVIYTILKKGSL 199          
BLAST of NO02G04230 vs. NCBI_GenBank
Match: OEU13643.1 (hypothetical protein FRACYDRAFT_171119 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 76.3 bits (186), Expect = 3.100e-10
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 0
Query:    1 MVEATKKVGANTVVELKRQTDQIADITDTVDAMENGLTRADKLIRAFGRRIATDKFIQFFFVLNCMLLIGIVTWYAVKKGKIKPPHLNTPPLP 94
            M+  TK+VG  T+ EL+RQ D + +I    D M + L RA+ L++ FG+R+A+DKFIQ F VLN +L +G+V W A+ KG+    + + P  P
Sbjct:  144 MIAQTKEVGVATLEELQRQRDVLQNIDKEADRMGDNLARAEALVKQFGKRMASDKFIQCFAVLNVLLFVGVVVW-AIFKGRGGEGNADAPADP 235          
BLAST of NO02G04230 vs. NCBI_GenBank
Match: XP_002182485.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45772.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 74.3 bits (181), Expect = 1.200e-9
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 0
Query:    2 VEATKKVGANTVVELKRQTDQIADITDTVDAMENGLTRADKLIRAFGRRIATDKFIQFFFVLNCMLLIGIVTWYAVKKGKIKPPHLNTPPLPTFDEVFGSGGSSDSGT 110
            +  +K+VG +T+ EL+RQ D I  I    D +++ L RA+ L++ FG+R+A+D FIQ F ++NC+LL+G+V +  +K G +   +  TP  P            DSGT
Sbjct:  151 ITESKEVGISTLEELERQRDVINSIEKETDRIDDNLARAEVLLKQFGKRMASDHFIQCFALINCLLLLGVVLYAVIKGGGLGLGNSGTPASPV---------DGDSGT 249          
BLAST of NO02G04230 vs. NCBI_GenBank
Match: GAX29156.1 (hypothetical protein FisN_7Hh244 [Fistulifera solaris])

HSP 1 Score: 73.6 bits (179), Expect = 2.000e-9
Identity = 37/93 (39.78%), Postives = 60/93 (64.52%), Query Frame = 0
Query:    1 MVEATKKVGANTVVELKRQTDQIADITDTVDAMENGLTRADKLIRAFGRRIATDKFIQFFFVLNCMLLIGIVTWYAVKKGKIKPPHLNTPPLP 94
            M+ A+K+VG  T+ EL+RQ + I +I    D +++ L RA+ LI+ F +R+A+D FIQ F ++NC+LL+ +V +  VKKG +     + P  P
Sbjct:  144 MIAASKEVGVATLEELERQRNVIQNIEKETDRLDDNLARAEALIKQFSKRMASDHFIQCFAMINCILLVVVVVYAIVKKGSLTGNDDSAPVAP 236          
BLAST of NO02G04230 vs. NCBI_GenBank
Match: GAX16521.1 (hypothetical protein FisN_7Lh244 [Fistulifera solaris])

HSP 1 Score: 71.6 bits (174), Expect = 7.700e-9
Identity = 35/93 (37.63%), Postives = 60/93 (64.52%), Query Frame = 0
Query:    1 MVEATKKVGANTVVELKRQTDQIADITDTVDAMENGLTRADKLIRAFGRRIATDKFIQFFFVLNCMLLIGIVTWYAVKKGKIKPPHLNTPPLP 94
            M+ ++K+VG  T+ EL+RQ + I +I    D +++ L RA+ LI+ F +R+A+D FIQ F ++NC+LL+ +V +  +KKG +     + P  P
Sbjct:  144 MIASSKEVGVATLEELERQRNVIQNIEKETDRLDDNLARAEALIKQFSKRMASDHFIQCFAMINCILLVVVVLYAIIKKGSLTGNDDSAPVAP 236          
BLAST of NO02G04230 vs. NCBI_GenBank
Match: XP_024574114.1 (Sec20 [Plasmopara halstedii] >CEG37745.1 Sec20 [Plasmopara halstedii])

HSP 1 Score: 68.9 bits (167), Expect = 5.000e-8
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 0
Query:    1 MVEATKKVGANTVVELKRQTDQIADITDTVDAMENGLTRADKLIRAFGRRIATDKFIQFFFVLNCMLLIGIVTWYAV--KKGKIKPPHLNTPPLPT 95
            MVE +K+V A T   L+ Q + I +ITD V  +E+ L RADKLIR+F RR+ATD+ I  F  L  + + GIV + AV  K      P   TPP PT
Sbjct:  143 MVEQSKEVAAATAEALRSQREHIVEITDAVMGIEDSLQRADKLIRSFARRMATDRVILLFTFLVIVGIAGIVGYKAVNPKDTTFYVPDEVTPPDPT 238          
BLAST of NO02G04230 vs. NCBI_GenBank
Match: CCI48608.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 68.6 bits (166), Expect = 6.500e-8
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 0
Query:    1 MVEATKKVGANTVVELKRQTDQIADITDTVDAMENGLTRADKLIRAFGRRIATDKFIQFFFVLNCMLLIGIVTWYAV--KKGKIKPPHLNTPPLPTFDEVFGSGGSSDSGT 110
            MVEA+K+V   T  +L+ Q  QI  ITD V  ME+ LTRADKLIR F RR+ATD+ I  F +L+ + +  IV + ++  K      P    PP P  D ++ +  S+ + T
Sbjct:  140 MVEASKEVAIATGEQLREQRQQIVQITDEVMRMEDSLTRADKLIRTFARRMATDRVILLFALLSFLGIAAIVVYKSMYPKDKTFAVPDEILPPSP--DTIYNAAISAANNT 248          
BLAST of NO02G04230 vs. NCBI_GenBank
Match: XP_009040643.1 (hypothetical protein AURANDRAFT_72457 [Aureococcus anophagefferens] >EGB04729.1 hypothetical protein AURANDRAFT_72457 [Aureococcus anophagefferens])

HSP 1 Score: 65.5 bits (158), Expect = 5.500e-7
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 0
Query:    1 MVEATKKVGANTVVELKRQTDQIADITDTVDAMENGLTRADKLIRAFGRRIATDKFIQFFFVLNCMLLIGIVTWYAV 78
            +VEA+ +VG + + EL+RQ +Q  DIT  V  +E+ LTRADKLIR F +R+ TDK I  F  +N   LIGIV +  V
Sbjct:  179 LVEASSEVGHSALNELERQQEQARDITTDVMIIEDNLTRADKLIRNFTKRMMTDKLIVCFAFVNMCGLIGIVVYCVV 255          
BLAST of NO02G04230 vs. NCBI_GenBank
Match: XP_009531261.1 (hypothetical protein PHYSODRAFT_249448 [Phytophthora sojae] >EGZ13832.1 hypothetical protein PHYSODRAFT_249448 [Phytophthora sojae])

HSP 1 Score: 65.1 bits (157), Expect = 7.200e-7
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 0
Query:    1 MVEATKKVGANTVVELKRQTDQIADITDTVDAMENGLTRADKLIRAFGRRIATDKFIQFFFVLNCMLLIGIVTWYAVKKG--KIKPPHLNTPPLPT 95
            MVE +K+V A T   L+ Q + I +ITD V  +E+ L RADKLIR+F RR+ATD+ I  F  L  + + GIV + +V         P   TPP PT
Sbjct:  142 MVEQSKEVAAATAEVLRGQREHIVEITDAVMGIEDSLQRADKLIRSFARRMATDRVILLFTFLVIVGIAGIVGYKSVHPDDTTFYVPDEVTPPDPT 237          
The following BLAST results are available for this feature:
BLAST of NO02G04230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
EWM30357.13.600e-3874.31soluble nsf attachment protein receptor [Nannochlo... [more]
XP_002289353.14.800e-1147.56predicted protein [Thalassiosira pseudonana CCMP13... [more]
OEU13643.13.100e-1043.01hypothetical protein FRACYDRAFT_171119 [Fragilario... [more]
XP_002182485.11.200e-937.04predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX29156.12.000e-939.78hypothetical protein FisN_7Hh244 [Fistulifera sola... [more]
GAX16521.17.700e-937.63hypothetical protein FisN_7Lh244 [Fistulifera sola... [more]
XP_024574114.15.000e-845.83Sec20 [Plasmopara halstedii] >CEG37745.1 Sec20 [Pl... [more]
CCI48608.16.500e-840.54unnamed protein product [Albugo candida][more]
XP_009040643.15.500e-749.35hypothetical protein AURANDRAFT_72457 [Aureococcus... [more]
XP_009531261.17.200e-743.75hypothetical protein PHYSODRAFT_249448 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04230.1NO02G04230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04230.1NO02G04230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04230 ID=NO02G04230|Name=NO02G04230|organism=Nannochloropsis oceanica|type=gene|length=1815bp
ATGGTGGAGGCGACGAAGAAAGTGGGCGCGAATACGGTGGTTGAGCTCAA
GAGGCAAACGGATCAGATTGCCGATATCACTGACACGGTGGATGCGATGG
AGAATGGGCTGACCCGTGCTGACAAGTTAATTCGGGCGTTCGGGCGGAGG
ATTGCCACGGATAAATTCATTCAATTCTTTTTTGTTCTGAATTGTATGTT
GCTTATTGGGATAGTGACCTGGTATGCGGTAAAGAAGGGGAAAATTAAGC
CACCTCATCTTAACACTCCTCCTCTCCCCACTTTTGATGAGGTTTTTGGG
AGTGGCGGAAGCAGTGACAGCGGCACTGATGCTGGGGGTGAGCCAATCGC
GCCCTTGGTACAGCCGGAGCCAGAGCCAGAGGAAGTGACACCCTCAGTGG
AACCGGAGCCAGAGCAAGAGCCACAGCCGGTACCGGTGACACCTCCTGTG
GTGCCGAAGCCAGAGCCAGAGCCGGTGACGCCTGCGGTAGAACCAGAGCC
AGAGCCAGAGCCGGTGCCGGTGATGCCTACGGTAGAACCAGAGCCAGAGC
CAGAGCCGATGACGCCTACGGTAGAACCAGAGCCGGAGCCAGAGCCAGAG
CCGGAGCCAGAGCCTGTGGCACCCCCGGTCGAGCAAGAGCCAGAGCCGGT
ACCAGTGACGCCCTCAGTAGAGGTGGAGCCAGAGCCAGAGCCGGTGACGC
CTACGATAGAACCAGAGCCAGAGCCGGAGCCAGAGCCGATGACGCCTACG
GTAGAGTCAGAGCCAGAGCCGATGGCAGTGACGCCCTCGGTCGAGCCGGA
GCCGGAACCAGAGCCAGAGCCGGTGGCAGTGATGCCCTCGGTCGAGCCGG
AGCCGGAACCAGAGCCAGAGTCGGTGGCAGTGACGCCCTCGGTCGAGCCG
GAGCCGGAACCAGAGCCAGAGCCGATGGCAGTGACGCCCTCGGTCGAGCC
GGAGCCGGAACCAGAGCTAGAGCCGGTGGCAGTGACGTCTACGGTCGAGC
CGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTCGAG
CCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTCGA
GCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTCG
AGCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTC
GAGCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGT
CGAGCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGTCTACGG
TAGAGCCAGATCCGGTGGCAGTGACGCCTACGGTAGAACCAGAGCCAGAG
CCAGCGCCGGCAGTGGTATCGCCATCAGTAAAGCTGGAGCTGGAGTTGGT
CACGCCTTCAGTGGACTCGGACACATCTCCTGCAAAGGAGGGGGGAGAGG
GGATACCAGAAAAGATTAGGGCGCGGAATTTAAGGGGGATTGTGGATGTG
GTGGCGCGGCTTCGGCGTTAAGGGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGAAGCTGCAAGGGATGGTCTGCTGATGCACCAATCGAGCGCGGTGCGT
TCCATTTTTGCATATCTATTAGGAGACCCAGGGAAGAAGGCACGGAGGAA
AGAAGGTGGAGATATGACTTTCGTCGTTGTACATGTACTGAGAAAAGAGG
AGGATTGTTCATGGACAATCTGGAGATTTATGAGTGTACGAGAAGGAGAA
AACGAAGAGAAAGAAAAAAAGATGGCCCCCCAAAAAAGAGAGAGAGAGAG
AAGAGAGAGAGAGAG
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protein sequence of NO02G04230.1

>NO02G04230.1-protein ID=NO02G04230.1-protein|Name=NO02G04230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MVEATKKVGANTVVELKRQTDQIADITDTVDAMENGLTRADKLIRAFGRR
IATDKFIQFFFVLNCMLLIGIVTWYAVKKGKIKPPHLNTPPLPTFDEVFG
SGGSSDSGTDAGGEPIAPLVQPEPEPEEVTPSVEPEPEQEPQPVPVTPPV
VPKPEPEPVTPAVEPEPEPEPVPVMPTVEPEPEPEPMTPTVEPEPEPEPE
PEPEPVAPPVEQEPEPVPVTPSVEVEPEPEPVTPTIEPEPEPEPEPMTPT
VESEPEPMAVTPSVEPEPEPEPEPVAVMPSVEPEPEPEPESVAVTPSVEP
EPEPEPEPMAVTPSVEPEPEPELEPVAVTSTVEPEPEPEPEPVAVTPSVE
PEPEPEPEPVAVTPSVEPEPEPEPEPVAVTPSVEPEPEPEPEPVAVTPSV
EPEPEPEPEPVAVTPSVEPEPEPEPEPVAVTSTVEPDPVAVTPTVEPEPE
PAPAVVSPSVKLELELVTPSVDSDTSPAKEGGEGIPEKIRARNLRGIVDV
VARLRR*
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Synonyms
Publications