NO02G04230.1, NO02G04230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04230.1
Unique NameNO02G04230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1815
Alignment locationchr2:1151334..1153148 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1151334..1153148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04230.1 vs.
Match: EKD11004.1 (Na-Ca exchanger/integrin-beta4 [Arthrospira platensis C1])

HSP 1 Score: 176.8 bits (447), Expect = 1.700e-40
Identity = 208/352 (59.09%), Postives = 218/352 (61.93%), Query Frame = 0 
Query:  109 TDAGGEPIA-PLVQPEPEPE-EVTPSVEPEPEQEPQPVPVTPPVVPKPEPEPV---TPAVEPEPEPEPVPVM-PTVEPEPEPEPMTPTVEPEPEPEPEPEPEPVAPPVEQEPEPVPVTPSVEVEPEPEPVTPTIEPEPEPEPEPMTPTVESEPEPMAVTPSVEPEPEPEPEPVAVMPSVEPEPEPEPESVAVTPSVEPEPEPEPEPMAVTPSVEPEPEPELEPVAVTSTVEPEPEPEPEPVAVTPSVEPEPEPEPEPVAVTPSVEPEPEPEPEPVAVTPSVEPEPEPEPEPVAVTPSVEPEPEPEPEPVA-VTPSVEPEPEPEPEPVAVTSTVEPDPVAVTPTVEPEPEPAP 454
            TD+  EPI+ P   PEPEPE E  P  EPEPE EP P P TP   P+PEPEP    TP  EP PEPEP P   PT EPEPEPEP  PT EP PEPEP PEPEP       EPEP P       EP PEP  PT EPEPEPEPEP  PT E EPEP       EPEPEPEP+P    P+ EPEPEPEPE     P+ EPEP PEPEP       EPEP PE +P     T EP PEPEPEP   TP  EPEP+P PEP   TP  EPEP+P PEP   TP  EPEPEPEPEP   TP  EPEPEPEPEP    TP   PEPEPEPEP     T EP+P   TP  EPEPEP P
Sbjct:    6 TDSRTEPISEPEPTPEPEPEPEPEPLPEPEPEPEPLPEP-TPEPEPEPEPEPEPEPTPEPEPTPEPEPEPEPEPTPEPEPEPEP-EPTPEPTPEPEPTPEPEP-------EPEPTP-------EPTPEP-EPTPEPEPEPEPEP-EPTPEPEPEP-------EPEPEPEPDPTP-EPTPEPEPEPEPE-----PTPEPEPTPEPEP-------EPEPTPEPDP-----TPEPTPEPEPEP---TPEPEPEPDPTPEP---TPEPEPEPDPTPEP---TPEPEPEPEPEPEP---TPEPEPEPEPEPEPEPDPTPEPTPEPEPEPEP---EPTPEPEP---TPEPEPEPEPEP 296
The following BLAST results are available for this feature:
BLAST of NO02G04230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EKD11004.11.700e-4059.09Na-Ca exchanger/integrin-beta4 [Arthrospira platen... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04230NO02G04230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04230.1NO02G04230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04230.1.cds1NO02G04230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04230.1 ID=NO02G04230.1|Name=NO02G04230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp
ATGGTGGAGGCGACGAAGAAAGTGGGCGCGAATACGGTGGTTGAGCTCAA
GAGGCAAACGGATCAGATTGCCGATATCACTGACACGGTGGATGCGATGG
AGAATGGGCTGACCCGTGCTGACAAGTTAATTCGGGCGTTCGGGCGGAGG
ATTGCCACGGATAAATTCATTCAATTCTTTTTTGTTCTGAATTGTATGTT
GCTTATTGGGATAGTGACCTGGTATGCGGTAAAGAAGGGGAAAATTAAGC
CACCTCATCTTAACACTCCTCCTCTCCCCACTTTTGATGAGGTTTTTGGG
AGTGGCGGAAGCAGTGACAGCGGCACTGATGCTGGGGGTGAGCCAATCGC
GCCCTTGGTACAGCCGGAGCCAGAGCCAGAGGAAGTGACACCCTCAGTGG
AACCGGAGCCAGAGCAAGAGCCACAGCCGGTACCGGTGACACCTCCTGTG
GTGCCGAAGCCAGAGCCAGAGCCGGTGACGCCTGCGGTAGAACCAGAGCC
AGAGCCAGAGCCGGTGCCGGTGATGCCTACGGTAGAACCAGAGCCAGAGC
CAGAGCCGATGACGCCTACGGTAGAACCAGAGCCGGAGCCAGAGCCAGAG
CCGGAGCCAGAGCCTGTGGCACCCCCGGTCGAGCAAGAGCCAGAGCCGGT
ACCAGTGACGCCCTCAGTAGAGGTGGAGCCAGAGCCAGAGCCGGTGACGC
CTACGATAGAACCAGAGCCAGAGCCGGAGCCAGAGCCGATGACGCCTACG
GTAGAGTCAGAGCCAGAGCCGATGGCAGTGACGCCCTCGGTCGAGCCGGA
GCCGGAACCAGAGCCAGAGCCGGTGGCAGTGATGCCCTCGGTCGAGCCGG
AGCCGGAACCAGAGCCAGAGTCGGTGGCAGTGACGCCCTCGGTCGAGCCG
GAGCCGGAACCAGAGCCAGAGCCGATGGCAGTGACGCCCTCGGTCGAGCC
GGAGCCGGAACCAGAGCTAGAGCCGGTGGCAGTGACGTCTACGGTCGAGC
CGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTCGAG
CCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTCGA
GCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTCG
AGCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTC
GAGCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGT
CGAGCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGTCTACGG
TAGAGCCAGATCCGGTGGCAGTGACGCCTACGGTAGAACCAGAGCCAGAG
CCAGCGCCGGCAGTGGTATCGCCATCAGTAAAGCTGGAGCTGGAGTTGGT
CACGCCTTCAGTGGACTCGGACACATCTCCTGCAAAGGAGGGGGGAGAGG
GGATACCAGAAAAGATTAGGGCGCGGAATTTAAGGGGGATTGTGGATGTG
GTGGCGCGGCTTCGGCGTTAAGGGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGAAGCTGCAAGGGATGGTCTGCTGATGCACCAATCGAGCGCGGTGCGT
TCCATTTTTGCATATCTATTAGGAGACCCAGGGAAGAAGGCACGGAGGAA
AGAAGGTGGAGATATGACTTTCGTCGTTGTACATGTACTGAGAAAAGAGG
AGGATTGTTCATGGACAATCTGGAGATTTATGAGTGTACGAGAAGGAGAA
AACGAAGAGAAAGAAAAAAAGATGGCCCCCCAAAAAAGAGAGAGAGAGAG
AAGAGAGAGAGAGAG
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protein sequence of NO02G04230.1

>NO02G04230.1-protein ID=NO02G04230.1-protein|Name=NO02G04230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MVEATKKVGANTVVELKRQTDQIADITDTVDAMENGLTRADKLIRAFGRR
IATDKFIQFFFVLNCMLLIGIVTWYAVKKGKIKPPHLNTPPLPTFDEVFG
SGGSSDSGTDAGGEPIAPLVQPEPEPEEVTPSVEPEPEQEPQPVPVTPPV
VPKPEPEPVTPAVEPEPEPEPVPVMPTVEPEPEPEPMTPTVEPEPEPEPE
PEPEPVAPPVEQEPEPVPVTPSVEVEPEPEPVTPTIEPEPEPEPEPMTPT
VESEPEPMAVTPSVEPEPEPEPEPVAVMPSVEPEPEPEPESVAVTPSVEP
EPEPEPEPMAVTPSVEPEPEPELEPVAVTSTVEPEPEPEPEPVAVTPSVE
PEPEPEPEPVAVTPSVEPEPEPEPEPVAVTPSVEPEPEPEPEPVAVTPSV
EPEPEPEPEPVAVTPSVEPEPEPEPEPVAVTSTVEPDPVAVTPTVEPEPE
PAPAVVSPSVKLELELVTPSVDSDTSPAKEGGEGIPEKIRARNLRGIVDV
VARLRR*
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mRNA from alignment at chr2:1151334..1153148+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04230.1 ID=NO02G04230.1|Name=NO02G04230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp|location=Sequence derived from alignment at chr2:1151334..1153148+ (Nannochloropsis oceanica)
ATGGTGGAGGCGACGAAGAAAGTGGGCGCGAATACGGTGGTTGAGCTCAA
GAGGCAAACGGATCAGATTGCCGATATCACTGACACGGTGGATGCGATGG
AGAATGGGCTGACCCGTGCTGACAAGTTAATTCGGGCGTTCGGGCGGAGG
ATTGCCACGGATAAATTCATTCAATTCTTTTTTGTTCTGAATTGTATGTT
GCTTATTGGGATAGTGACCTGGTATGCGGTAAAGAAGGGGAAAATTAAGC
CACCTCATCTTAACACTCCTCCTCTCCCCACTTTTGATGAGGTTTTTGGG
AGTGGCGGAAGCAGTGACAGCGGCACTGATGCTGGGGGTGAGCCAATCGC
GCCCTTGGTACAGCCGGAGCCAGAGCCAGAGGAAGTGACACCCTCAGTGG
AACCGGAGCCAGAGCAAGAGCCACAGCCGGTACCGGTGACACCTCCTGTG
GTGCCGAAGCCAGAGCCAGAGCCGGTGACGCCTGCGGTAGAACCAGAGCC
AGAGCCAGAGCCGGTGCCGGTGATGCCTACGGTAGAACCAGAGCCAGAGC
CAGAGCCGATGACGCCTACGGTAGAACCAGAGCCGGAGCCAGAGCCAGAG
CCGGAGCCAGAGCCTGTGGCACCCCCGGTCGAGCAAGAGCCAGAGCCGGT
ACCAGTGACGCCCTCAGTAGAGGTGGAGCCAGAGCCAGAGCCGGTGACGC
CTACGATAGAACCAGAGCCAGAGCCGGAGCCAGAGCCGATGACGCCTACG
GTAGAGTCAGAGCCAGAGCCGATGGCAGTGACGCCCTCGGTCGAGCCGGA
GCCGGAACCAGAGCCAGAGCCGGTGGCAGTGATGCCCTCGGTCGAGCCGG
AGCCGGAACCAGAGCCAGAGTCGGTGGCAGTGACGCCCTCGGTCGAGCCG
GAGCCGGAACCAGAGCCAGAGCCGATGGCAGTGACGCCCTCGGTCGAGCC
GGAGCCGGAACCAGAGCTAGAGCCGGTGGCAGTGACGTCTACGGTCGAGC
CGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTCGAG
CCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTCGA
GCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTCG
AGCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTC
GAGCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGT
CGAGCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGTCTACGG
TAGAGCCAGATCCGGTGGCAGTGACGCCTACGGTAGAACCAGAGCCAGAG
CCAGCGCCGGCAGTGGTATCGCCATCAGTAAAGCTGGAGCTGGAGTTGGT
CACGCCTTCAGTGGACTCGGACACATCTCCTGCAAAGGAGGGGGGAGAGG
GGATACCAGAAAAGATTAGGGCGCGGAATTTAAGGGGGATTGTGGATGTG
GTGGCGCGGCTTCGGCGTTAAGGGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGAAGCTGCAAGGGATGGTCTGCTGATGCACCAATCGAGCGCGGTGCGT
TCCATTTTTGCATATCTATTAGGAGACCCAGGGAAGAAGGCACGGAGGAA
AGAAGGTGGAGATATGACTTTCGTCGTTGTACATGTACTGAGAAAAGAGG
AGGATTGTTCATGGACAATCTGGAGATTTATGAGTGTACGAGAAGGAGAA
AACGAAGAGAAAGAAAAAAAGATGGCCCCCCAAAAAAGAGAGAGAGAGAG
AAGAGAGAGAGAGAG
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Coding sequence (CDS) from alignment at chr2:1151334..1153148+

>NO02G04230.1 ID=NO02G04230.1|Name=NO02G04230.1|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at chr2:1151334..1153148+ (Nannochloropsis oceanica)
ATGGTGGAGGCGACGAAGAAAGTGGGCGCGAATACGGTGGTTGAGCTCAA
GAGGCAAACGGATCAGATTGCCGATATCACTGACACGGTGGATGCGATGG
AGAATGGGCTGACCCGTGCTGACAAGTTAATTCGGGCGTTCGGGCGGAGG
ATTGCCACGGATAAATTCATTCAATTCTTTTTTGTTCTGAATTGTATGTT
GCTTATTGGGATAGTGACCTGGTATGCGGTAAAGAAGGGGAAAATTAAGC
CACCTCATCTTAACACTCCTCCTCTCCCCACTTTTGATGAGGTTTTTGGG
AGTGGCGGAAGCAGTGACAGCGGCACTGATGCTGGGGGTGAGCCAATCGC
GCCCTTGGTACAGCCGGAGCCAGAGCCAGAGGAAGTGACACCCTCAGTGG
AACCGGAGCCAGAGCAAGAGCCACAGCCGGTACCGGTGACACCTCCTGTG
GTGCCGAAGCCAGAGCCAGAGCCGGTGACGCCTGCGGTAGAACCAGAGCC
AGAGCCAGAGCCGGTGCCGGTGATGCCTACGGTAGAACCAGAGCCAGAGC
CAGAGCCGATGACGCCTACGGTAGAACCAGAGCCGGAGCCAGAGCCAGAG
CCGGAGCCAGAGCCTGTGGCACCCCCGGTCGAGCAAGAGCCAGAGCCGGT
ACCAGTGACGCCCTCAGTAGAGGTGGAGCCAGAGCCAGAGCCGGTGACGC
CTACGATAGAACCAGAGCCAGAGCCGGAGCCAGAGCCGATGACGCCTACG
GTAGAGTCAGAGCCAGAGCCGATGGCAGTGACGCCCTCGGTCGAGCCGGA
GCCGGAACCAGAGCCAGAGCCGGTGGCAGTGATGCCCTCGGTCGAGCCGG
AGCCGGAACCAGAGCCAGAGTCGGTGGCAGTGACGCCCTCGGTCGAGCCG
GAGCCGGAACCAGAGCCAGAGCCGATGGCAGTGACGCCCTCGGTCGAGCC
GGAGCCGGAACCAGAGCTAGAGCCGGTGGCAGTGACGTCTACGGTCGAGC
CGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTCGAG
CCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTCGA
GCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTCG
AGCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGTC
GAGCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGCCCTCGGT
CGAGCCGGAGCCGGAACCAGAGCCAGAGCCGGTGGCAGTGACGTCTACGG
TAGAGCCAGATCCGGTGGCAGTGACGCCTACGGTAGAACCAGAGCCAGAG
CCAGCGCCGGCAGTGGTATCGCCATCAGTAAAGCTGGAGCTGGAGTTGGT
CACGCCTTCAGTGGACTCGGACACATCTCCTGCAAAGGAGGGGGGAGAGG
GGATACCAGAAAAGATTAGGGCGCGGAATTTAAGGGGGATTGTGGATGTG
GTGGCGCGGCTTCGGCGTTAA
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Synonyms
Publications